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[jalview.git] / src / jalview / gui / ChimeraViewFrame.java

2022-12-14	Jim Procter	Merge branch 'develop' into update_212_Dec_merge_with_2...	blob \| commitdiff
2022-11-21	Jim Procter	Merge commit 'alpha/update_2_12_for_2_11_2_series_merge...	blob \| commitdiff \| diff to current
2022-03-08	Jim Procter	JAL-3438 spotless for 2.11.2.0	blob \| commitdiff \| diff to current
2022-03-02	Jim Procter	JAL-3619 fix up error messages and try to bail quietly...	blob \| commitdiff \| diff to current
2022-03-02	Jim Procter	JAL-3619 fix up warning message and minimal patch to...	blob \| commitdiff \| diff to current
2022-02-11	Jim Procter	JAL-3949 - refactor logging from jalview.bin.Cache...	blob \| commitdiff \| diff to current
2022-02-11	Ben Soares	JAL-3949 Complete new abstracted logging framework...	blob \| commitdiff \| diff to current
2021-12-08	Jim Procter	JAL-3616 update messages/tooltips/menu items to use...	blob \| commitdiff \| diff to current
2021-10-18	Jim Procter	JAL-3904 override buildActionMenu to add in additional...	blob \| commitdiff \| diff to current
2021-09-02	gmungoc	JAL-3509 coerce RESNUM to hidden (really) after fetchin...	blob \| commitdiff \| diff to current
2020-06-29	gmungoc	JAL-3518 corrected pulled up focusView() command	blob \| commitdiff \| diff to current
2020-06-25	gmungoc	JAL-3518 pull up [get\|list]ResidueAttributes to Structu...	blob \| commitdiff \| diff to current
2020-06-03	BobHanson	JAL-3446 from JAL-3253 ApplicationSingletonProvider...	blob \| commitdiff \| diff to current
2020-05-26	gmungoc	JAL-1761 pattern for structure viewer construction...	blob \| commitdiff \| diff to current
2020-05-21	gmungoc	JAL-3551 copy Jalview features to Pymol 'p' (with pull...	blob \| commitdiff \| diff to current
2020-05-19	gmungoc	Merge branch 'develop' into feature/JAL-3551Pymol	blob \| commitdiff \| diff to current
2020-05-15	gmungoc	JAL-3551 pull up Close Viewer dialog to base class	blob \| commitdiff \| diff to current
2020-05-11	gmungoc	JAL-2422 JAL-3551 viewer text/variables generalised...	blob \| commitdiff \| diff to current
2020-04-30	gmungoc	JAL-3551 save structure viewer session refactorings...	blob \| commitdiff \| diff to current
2020-03-13	gmungoc	JAL-3551 working proof of concept of Jalview driving...	blob \| commitdiff \| diff to current
2020-02-28	gmungoc	JAL-3518 basic refactoring / pull up of superposeStruct...	blob \| commitdiff \| diff to current
2020-02-21	gmungoc	JAL-3518 more extraction of ChimeraX commands as overrides	blob \| commitdiff \| diff to current
2020-02-21	gmungoc	JAL-2422 tidy of methods and parameters	blob \| commitdiff \| diff to current
2020-02-20	gmungoc	JAL-2422 pull-up refactoring of structure commands...	blob \| commitdiff \| diff to current
2020-02-06	gmungoc	JAL-3509 coerce RESNUM to hidden (really) after fetchin...	blob \| commitdiff \| diff to current
2020-02-04	gmungoc	JAL-2422 pull up refactoring in preparation for Chimera...	blob \| commitdiff \| diff to current
2020-01-31	gmungoc	JAL-2422 temporary hacks removed; use hex colours for...	blob \| commitdiff \| diff to current
2020-01-30	gmungoc	JAL-2422 save/restore ChimeraX session	blob \| commitdiff \| diff to current
2020-01-14	gmungoc	JAL-2422 proof of concept adaptations for ChimeraX...	blob \| commitdiff \| diff to current
2019-07-16	gmungoc	JAL-3210 Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2019-05-02	gmungoc	JAL-3244 renamed Platform method for clarity bug/JAL-3244jmolWindows	blob \| commitdiff \| diff to current
2018-07-23	gmungoc	JAL-3048 all image export (alignment, tree, PCA, Jmol...	blob \| commitdiff \| diff to current
2018-05-04	Jim Procter	JAL-2948 transfer features/annotation is now available...	blob \| commitdiff \| diff to current
2018-04-12	gmungoc	JAL-2944 tidies for review comments	blob \| commitdiff \| diff to current
2018-04-09	Jim Procter	JAL-1847 JAL-2944 make superposition step a configurabl...	blob \| commitdiff \| diff to current
2018-04-05	Jim Procter	JAL-2944 remove modal prompt logic and expose methods...	blob \| commitdiff \| diff to current
2018-04-05	Jim Procter	JAL-2944 pull up structure viewer discovery routine...	blob \| commitdiff \| diff to current
2017-10-27	gmungoc	JAL-1793 spike branch updated to latest	blob \| commitdiff \| diff to current
2017-10-10	Jim Procter	Merge branch 'codereviews/JAL-1990_IProgressIndicator_j...	blob \| commitdiff \| diff to current
2017-10-03	gmungoc	JAL-2738 copy to spikes/mungo	blob \| commitdiff \| diff to current
2017-08-16	Jim Procter	JAL-2418 source formatting	blob \| commitdiff \| diff to current
2017-06-09	gmungoc	JAL-2446 merged to spike branch	blob \| commitdiff \| diff to current
2017-05-29	Jim Procter	Merge branch 'features/JAL-2465_No-mapping_Jmol-structu...	blob \| commitdiff \| diff to current
2017-05-02	gmungoc	JAL-2447 EXPERIMENTAL preference (option in Tools menu) features/JAL-2447experimentalFlag	blob \| commitdiff \| diff to current
2017-05-01	tcofoegbu	JAL-2465 missed commit for refactore renaming of getPdb...	blob \| commitdiff \| diff to current
2017-03-21	gmungoc	JAL-2243 update discovered features on opening structur...	blob \| commitdiff \| diff to current
2017-03-07	gmungoc	JAL-2295 status messages for Chimera attributes set...	blob \| commitdiff \| diff to current
2017-03-02	gmungoc	JAL-2295 make 'Jmol' menu appear; enable/disable Superp...	blob \| commitdiff \| diff to current
2017-03-01	gmungoc	Merge branch 'features/JAL-2295setChimeraAttributes...	blob \| commitdiff \| diff to current
2016-12-22	gmungoc	JAL-2360 structure viewers now using ColourMenuHelper...	blob \| commitdiff \| diff to current
2016-12-16	gmungoc	JAL-2360 refactoring for JalviewColourScheme enum,	blob \| commitdiff \| diff to current
2016-12-12	gmungoc	JAL-1544 backgroud -> background	blob \| commitdiff \| diff to current
2016-12-08	gmungoc	Merge branch 'bug/JAL-2358phantomChimera' into spikes...	blob \| commitdiff \| diff to current
2016-12-08	gmungoc	JAL-2358 ensure mappings removed on close Chimera;... bug/JAL-2358phantomChimera	blob \| commitdiff \| diff to current
2016-11-29	gmungoc	Merge branch 'develop' into features/JAL-2295setChimera...	blob \| commitdiff \| diff to current
2016-11-28	gmungoc	Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2016-11-25	gmungoc	Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2016-11-24	tcofoegbu	JAL-2326 updated references of JOptionPane to JvOptionPane	blob \| commitdiff \| diff to current
2016-11-16	gmungoc	Merge branch 'develop' into features/JAL-2295setChimera...	blob \| commitdiff \| diff to current
2016-11-14	gmungoc	JAL-2295 JAL-2296 skeleton 'attributes to features...	blob \| commitdiff \| diff to current
2016-11-11	gmungoc	JAL-2295 improved integrity of 'isFinishedInit' flag	blob \| commitdiff \| diff to current
2016-11-11	gmungoc	JAL-2295 set finishedInit to false before checking...	blob \| commitdiff \| diff to current
2016-11-10	tcofoegbu	Bugfix to enable accurate chain extraction/association...	blob \| commitdiff \| diff to current
2016-11-07	gmungoc	JAL-2295 (unoptimised) write Jalview features as Chimer...	blob \| commitdiff \| diff to current
2016-11-03	gmungoc	JAL-2295 step 1 new menu item to transfer Jalview attri...	blob \| commitdiff \| diff to current
2016-10-27	gmungoc	JAL-2287 treat Escape like Cancel in dialog box	blob \| commitdiff \| diff to current
2016-10-26	gmungoc	JAL-2287 Cancel option on Close Chimera? dialog	blob \| commitdiff \| diff to current
2016-10-25	Jim Procter	JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch	blob \| commitdiff \| diff to current
2016-10-24	Jim Procter	Merge branch 'releases/Release_2_10_0_Branch'	blob \| commitdiff \| diff to current
2016-10-13	gmungoc	JAL-2044 include model name in progress bar message...	blob \| commitdiff \| diff to current
2016-10-06	Jim Procter	JAL-2089 Merge branch releases/Release_2_10_Branch...	blob \| commitdiff \| diff to current
2016-09-07	Jim Procter	JAL-2191 comments re chimera view code redundancy and...	blob \| commitdiff \| diff to current
2016-07-11	gmungoc	file format enum wip changes	blob \| commitdiff \| diff to current
2016-03-24	gmungoc	JAL-1705 removed experimental 'highlight selection...	blob \| commitdiff \| diff to current
2016-02-12	gmungoc	JAL-2010 simple prototype of 'Highlight Selection'...	blob \| commitdiff \| diff to current
2015-10-16	Jim Procter	JAL-1925 update source version in license Release_2_9_0b2	blob \| commitdiff \| diff to current
2015-10-08	Jim Procter	JAL-1894 update year/version in copyright	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 source formatting and organise imports	blob \| commitdiff \| diff to current
2015-09-04	Jim Procter	JAL-1847 added AUTOSUPERIMPOSE property which can be...	blob \| commitdiff \| diff to current
2015-08-19	gmungoc	JAL-1742 suppress 'add chain' option for Jmol, pull...	blob \| commitdiff \| diff to current
2015-08-07	tcofoegbu	JAL-1824 updated caching procedure for pdb entries...	blob \| commitdiff \| diff to current
2015-06-18	gmungoc	JAL-1544 typos in comments	blob \| commitdiff \| diff to current
2015-06-10	gmungoc	JAL-1764 save Chimera/Jmol state as separate entries...	blob \| commitdiff \| diff to current
2015-06-05	gmungoc	JAL-1588 error dialog if Chimera project opened on...	blob \| commitdiff \| diff to current
2015-06-05	gmungoc	JAL-1622 fix bug computing superposition + associated...	blob \| commitdiff \| diff to current
2015-06-05	gmungoc	JAL-1746 return empty string rather than null in getSta...	blob \| commitdiff \| diff to current
2015-06-04	gmungoc	JAL-1750 View Mapping scoped to that viewer's mappings...	blob \| commitdiff \| diff to current
2015-06-04	gmungoc	JAL-1743 new Chimera menu option to 'fit to window'	blob \| commitdiff \| diff to current
2015-06-04	gmungoc	JAL-1743 View Chain sub-menu now being populated	blob \| commitdiff \| diff to current
2015-06-04	gmungoc	JAL-1753 ChimeraViewFrame hosts its own ProgressBar	blob \| commitdiff \| diff to current
2015-06-04	gmungoc	JAL-1742 don't offer to align another chain to the...	blob \| commitdiff \| diff to current
2015-05-05	gmungoc	JAL-1725 first version of Jetty server / chimera select...	blob \| commitdiff \| diff to current
2015-03-30	gmungoc	JAL-1596 refactoring to allow unit tests to start and...	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	JAL-1683 replace year/version strings with tokens in...	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...	blob \| commitdiff \| diff to current
2015-01-26	gmungoc	Merge branch 'features/JAL-1588saveChimeraSession'...	blob \| commitdiff \| diff to current
2015-01-26	gmungoc	JAL-1588 restoring saved Chimera session(s)	blob \| commitdiff \| diff to current
2015-01-08	gmungoc	JAL-1588 part work save/restore of Chimera session	blob \| commitdiff \| diff to current
2015-01-07	gmungoc	JAL-1588 refactoring to StructureViewerBase and related	blob \| commitdiff \| diff to current
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