Merge branch 'JAL-3878_ws-overhaul-3' into with_ws_overhaul-3
[jalview.git] / src / jalview / gui / ChimeraViewFrame.java
2022-12-14 Jim ProcterMerge branch 'develop' into update_212_Dec_merge_with_2...
2022-11-21 Jim ProcterMerge commit 'alpha/update_2_12_for_2_11_2_series_merge...
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0
2022-03-02 Jim ProcterJAL-3619 fix up error messages and try to bail quietly...
2022-03-02 Jim ProcterJAL-3619 fix up warning message and minimal patch to...
2022-02-11 Jim ProcterJAL-3949 - refactor logging from jalview.bin.Cache...
2022-02-11 Ben SoaresJAL-3949 Complete new abstracted logging framework...
2021-12-08 Jim ProcterJAL-3616 update messages/tooltips/menu items to use...
2021-10-18 Jim ProcterJAL-3904 override buildActionMenu to add in additional...
2021-09-02 gmungocJAL-3509 coerce RESNUM to hidden (really) after fetchin...
2020-06-29 gmungocJAL-3518 corrected pulled up focusView() command
2020-06-25 gmungocJAL-3518 pull up [get|list]ResidueAttributes to Structu...
2020-06-03 BobHansonJAL-3446 from JAL-3253 ApplicationSingletonProvider...
2020-05-26 gmungocJAL-1761 pattern for structure viewer construction...
2020-05-21 gmungocJAL-3551 copy Jalview features to Pymol 'p' (with pull...
2020-05-19 gmungocMerge branch 'develop' into feature/JAL-3551Pymol
2020-05-15 gmungocJAL-3551 pull up Close Viewer dialog to base class
2020-05-11 gmungocJAL-2422 JAL-3551 viewer text/variables generalised...
2020-04-30 gmungocJAL-3551 save structure viewer session refactorings...
2020-03-13 gmungocJAL-3551 working proof of concept of Jalview driving...
2020-02-28 gmungocJAL-3518 basic refactoring / pull up of superposeStruct...
2020-02-21 gmungocJAL-3518 more extraction of ChimeraX commands as overrides
2020-02-21 gmungocJAL-2422 tidy of methods and parameters
2020-02-20 gmungocJAL-2422 pull-up refactoring of structure commands...
2020-02-06 gmungocJAL-3509 coerce RESNUM to hidden (really) after fetchin...
2020-02-04 gmungocJAL-2422 pull up refactoring in preparation for Chimera...
2020-01-31 gmungocJAL-2422 temporary hacks removed; use hex colours for...
2020-01-30 gmungocJAL-2422 save/restore ChimeraX session
2020-01-14 gmungocJAL-2422 proof of concept adaptations for ChimeraX...
2019-07-16 gmungocJAL-3210 Merge branch 'develop' into trialMerge
2019-05-02 gmungocJAL-3244 renamed Platform method for clarity bug/JAL-3244jmolWindows
2018-07-23 gmungocJAL-3048 all image export (alignment, tree, PCA, Jmol...
2018-05-04 Jim ProcterJAL-2948 transfer features/annotation is now available...
2018-04-12 gmungocJAL-2944 tidies for review comments
2018-04-09 Jim ProcterJAL-1847 JAL-2944 make superposition step a configurabl...
2018-04-05 Jim ProcterJAL-2944 remove modal prompt logic and expose methods...
2018-04-05 Jim ProcterJAL-2944 pull up structure viewer discovery routine...
2017-10-27 gmungocJAL-1793 spike branch updated to latest
2017-10-10 Jim ProcterMerge branch 'codereviews/JAL-1990_IProgressIndicator_j...
2017-10-03 gmungocJAL-2738 copy to spikes/mungo
2017-08-16 Jim ProcterJAL-2418 source formatting
2017-06-09 gmungocJAL-2446 merged to spike branch
2017-05-29 Jim ProcterMerge branch 'features/JAL-2465_No-mapping_Jmol-structu...
2017-05-02 gmungocJAL-2447 EXPERIMENTAL preference (option in Tools menu) features/JAL-2447experimentalFlag
2017-05-01 tcofoegbuJAL-2465 missed commit for refactore renaming of getPdb...
2017-03-21 gmungocJAL-2243 update discovered features on opening structur...
2017-03-07 gmungocJAL-2295 status messages for Chimera attributes set...
2017-03-02 gmungocJAL-2295 make 'Jmol' menu appear; enable/disable Superp...
2017-03-01 gmungocMerge branch 'features/JAL-2295setChimeraAttributes...
2016-12-22 gmungocJAL-2360 structure viewers now using ColourMenuHelper...
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum,
2016-12-12 gmungocJAL-1544 backgroud -> background
2016-12-08 gmungocMerge branch 'bug/JAL-2358phantomChimera' into spikes...
2016-12-08 gmungocJAL-2358 ensure mappings removed on close Chimera;... bug/JAL-2358phantomChimera
2016-11-29 gmungocMerge branch 'develop' into features/JAL-2295setChimera...
2016-11-28 gmungocMerge branch 'develop' into trialMerge
2016-11-25 gmungocMerge branch 'develop' into trialMerge
2016-11-24 tcofoegbuJAL-2326 updated references of JOptionPane to JvOptionPane
2016-11-16 gmungocMerge branch 'develop' into features/JAL-2295setChimera...
2016-11-14 gmungocJAL-2295 JAL-2296 skeleton 'attributes to features...
2016-11-11 gmungocJAL-2295 improved integrity of 'isFinishedInit' flag
2016-11-11 gmungocJAL-2295 set finishedInit to false before checking...
2016-11-10 tcofoegbuBugfix to enable accurate chain extraction/association...
2016-11-07 gmungocJAL-2295 (unoptimised) write Jalview features as Chimer...
2016-11-03 gmungocJAL-2295 step 1 new menu item to transfer Jalview attri...
2016-10-27 gmungocJAL-2287 treat Escape like Cancel in dialog box
2016-10-26 gmungocJAL-2287 Cancel option on Close Chimera? dialog
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-24 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch'
2016-10-13 gmungocJAL-2044 include model name in progress bar message...
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-09-07 Jim ProcterJAL-2191 comments re chimera view code redundancy and...
2016-07-11 gmungocfile format enum wip changes
2016-03-24 gmungocJAL-1705 removed experimental 'highlight selection...
2016-02-12 gmungocJAL-2010 simple prototype of 'Highlight Selection'...
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-09-04 Jim ProcterJAL-1847 added AUTOSUPERIMPOSE property which can be...
2015-08-19 gmungocJAL-1742 suppress 'add chain' option for Jmol, pull...
2015-08-07 tcofoegbuJAL-1824 updated caching procedure for pdb entries...
2015-06-18 gmungocJAL-1544 typos in comments
2015-06-10 gmungocJAL-1764 save Chimera/Jmol state as separate entries...
2015-06-05 gmungocJAL-1588 error dialog if Chimera project opened on...
2015-06-05 gmungocJAL-1622 fix bug computing superposition + associated...
2015-06-05 gmungocJAL-1746 return empty string rather than null in getSta...
2015-06-04 gmungocJAL-1750 View Mapping scoped to that viewer's mappings...
2015-06-04 gmungocJAL-1743 new Chimera menu option to 'fit to window'
2015-06-04 gmungocJAL-1743 View Chain sub-menu now being populated
2015-06-04 gmungocJAL-1753 ChimeraViewFrame hosts its own ProgressBar
2015-06-04 gmungocJAL-1742 don't offer to align another chain to the...
2015-05-05 gmungocJAL-1725 first version of Jetty server / chimera select...
2015-03-30 gmungocJAL-1596 refactoring to allow unit tests to start and...
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
2015-01-26 gmungocMerge branch 'features/JAL-1588saveChimeraSession'...
2015-01-26 gmungocJAL-1588 restoring saved Chimera session(s)
2015-01-08 gmungocJAL-1588 part work save/restore of Chimera session
2015-01-07 gmungocJAL-1588 refactoring to StructureViewerBase and related
next