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[jalview.git] / src / jalview / gui / Desktop.java

2017-11-07	gmungoc	JAL-2069 update spike branch with latest	blob \| commitdiff
2017-10-31	kiramt	JAL-2756 update for new EBI https link	blob \| commitdiff
2017-10-27	gmungoc	JAL-1793 spike branch updated to latest	blob \| commitdiff \| diff to current
2017-10-25	Jim Procter	JAL-2779 remove empty block and if statement	blob \| commitdiff \| diff to current
2017-10-20	Jim Procter	JAL-2779 keep a reference to original Aqua manager...	blob \| commitdiff \| diff to current
2017-10-18	Jim Procter	JAL-2779 switch order for updating the current alignmen...	blob \| commitdiff \| diff to current
2017-10-18	Jim Procter	JAL-2779 remove dead code	blob \| commitdiff \| diff to current
2017-10-18	Jim Procter	JAL-2779 hook in our own AquaInternalFrameManager when...	blob \| commitdiff \| diff to current
2017-10-03	gmungoc	JAL-2738 copy to spikes/mungo	blob \| commitdiff \| diff to current
2017-09-15	Jim Procter	JAL-1625 ensure we don’t regress on JAL-20 - we always... patch/JAL-2732	blob \| commitdiff \| diff to current
2017-09-15	Jim Procter	JAL-2733 redraw after changing the memory status displa...	blob \| commitdiff \| diff to current
2017-09-15	Jim Procter	JAL-1625 JAL-1900 preserve the original DesktopManager...	blob \| commitdiff \| diff to current
2017-09-15	Jim Procter	JAL-1900 JAL-1625 back out OSX specific double buffer...	blob \| commitdiff \| diff to current
2017-09-15	Jim Procter	JAL-1551 standard code formatting	blob \| commitdiff \| diff to current
2017-09-15	Jim Procter	JAL-2732 force a redraw after resize/drag to clear...	blob \| commitdiff \| diff to current
2017-08-16	Jim Procter	JAL-2418 source formatting	blob \| commitdiff \| diff to current
2017-06-09	gmungoc	JAL-2446 merged to spike branch	blob \| commitdiff \| diff to current
2017-06-02	tcofoegbu	JAL-2473 revised default minimum dimension for Alignmen...	blob \| commitdiff \| diff to current
2017-05-29	Jim Procter	Merge branch 'bug/JAL-2536' into develop	blob \| commitdiff \| diff to current
2017-05-29	Jim Procter	JAL-2536 tweak javadoc wording	blob \| commitdiff \| diff to current
2017-05-17	Jim Procter	Merge branch 'features/JAL-2447experimentalFlag' into...	blob \| commitdiff \| diff to current
2017-05-16	kiramt	JAL-2536 Overview window sizing not subject to min... bug/JAL-2536	blob \| commitdiff \| diff to current
2017-05-02	gmungoc	JAL-2447 EXPERIMENTAL preference (option in Tools menu) features/JAL-2447experimentalFlag	blob \| commitdiff \| diff to current
2017-04-10	tcofoegbu	JAL-2473 added improvement to apply default / custom...	blob \| commitdiff \| diff to current
2017-03-24	kiramt	JAL-2314 Tidy up	blob \| commitdiff \| diff to current
2017-03-23	kiramt	JAL-2314 Tweaks to stop thread sync issues	blob \| commitdiff \| diff to current
2017-03-23	kiramt	JAL-2314 Tidies	blob \| commitdiff \| diff to current
2017-01-26	kiramt	Merge remote-tracking branch 'origin/develop' into...	blob \| commitdiff \| diff to current
2017-01-25	gmungoc	JAL-2344 push Cache.getProperty("LAST_DIRECTORY") insid...	blob \| commitdiff \| diff to current
2017-01-12	gmungoc	JAL-2344 now flagging formats as 'identifiable' instead...	blob \| commitdiff \| diff to current
2017-01-11	gmungoc	JAL-2344 FileFormats singleton for formats, FileFormatI...	blob \| commitdiff \| diff to current
2016-12-15	kiramt	JAL-2316 Changes following review.	blob \| commitdiff \| diff to current
2016-12-13	kiramt	Merge branch 'develop' into features/JAL-2316	blob \| commitdiff \| diff to current
2016-12-08	gmungoc	JAL-2359 add Window menu entry only after all danger...	blob \| commitdiff \| diff to current
2016-12-07	gmungoc	JAL-2344 handle null format, simplify JalviewFileChoose...	blob \| commitdiff \| diff to current
2016-12-07	kiramt	JAL-2316 Restructure identifiers.org download	blob \| commitdiff \| diff to current
2016-12-05	kiramt	JAL-2316 Adjusted unit tests. Tidied UrlLinkProviderI...	blob \| commitdiff \| diff to current
2016-11-28	gmungoc	Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2016-11-25	gmungoc	Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2016-11-25	gmungoc	JAL-2344 use .equals() to compare FileFormatI objects	blob \| commitdiff \| diff to current
2016-11-24	tcofoegbu	JAL-2326 updated references of JOptionPane to JvOptionPane	blob \| commitdiff \| diff to current
2016-11-15	kiramt	JAL-2316 Moved url providers into own package	blob \| commitdiff \| diff to current
2016-11-15	kiramt	JAL-2316 Refactoring of functionality to provide urls...	blob \| commitdiff \| diff to current
2016-11-07	gmungoc	JAL-2282 show url links that need checked; remove ...	blob \| commitdiff \| diff to current
2016-11-04	kiramt	JAL-2282 Better check for existing url links	blob \| commitdiff \| diff to current
2016-11-04	kiramt	JAL-2282 Message box stays on top at Jalview open;...	blob \| commitdiff \| diff to current
2016-11-03	kiramt	JAL-2282 If checkbox on warning dialog is unclicked...	blob \| commitdiff \| diff to current
2016-11-01	kiramt	JAL-2282 Changed DB accession id token to $DB_ACCESSION...	blob \| commitdiff \| diff to current
2016-10-25	Jim Procter	JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch	blob \| commitdiff \| diff to current
2016-10-24	Jim Procter	Merge branch 'releases/Release_2_10_0_Branch'	blob \| commitdiff \| diff to current
2016-10-17	kiramt	Re-attempt to fix JAL-1552 by removing extra calls...	blob \| commitdiff \| diff to current
2016-10-11	kiramt	JAL-1552 added acceptDrop call before getTransferable... bug/JAL-1552dragndropurl	blob \| commitdiff \| diff to current
2016-10-06	Jim Procter	JAL-2089 Merge branch releases/Release_2_10_Branch...	blob \| commitdiff \| diff to current
2016-10-05	Jim Procter	JAL-2189 source formatting	blob \| commitdiff \| diff to current
2016-09-22	gmungoc	JAL-2216 null currentAlignFrame on close all windows...	blob \| commitdiff \| diff to current
2016-08-31	gmungoc	JAL-2077 test isPopupTrigger in mouseReleased or mouseC...	blob \| commitdiff \| diff to current
2016-08-30	gmungoc	JAL-2183 defensive check for openFrameCount < 0 (should...	blob \| commitdiff \| diff to current
2016-08-30	gmungoc	Merge branch 'develop' into features/filetypeEnum	blob \| commitdiff \| diff to current
2016-07-29	Jim Procter	JAL-2164 JAL-1772 explodeViews can be static, so make...	blob \| commitdiff \| diff to current
2016-07-12	gmungoc	FileFormat enum wip changes	blob \| commitdiff \| diff to current
2016-07-11	gmungoc	file format enum wip changes	blob \| commitdiff \| diff to current
2016-06-21	gmungoc	JAL-2074 suppress prompt to save closed Groovy script...	blob \| commitdiff \| diff to current
2016-06-21	gmungoc	JAL-2074 reuse Groovy window when reopening; rebind...	blob \| commitdiff \| diff to current
2016-06-20	Jim Procter	Merge branch 'develop' into features/JAL-1812_JAL-2083_... features/JAL-1812_JAL-2083_groovyBinding	blob \| commitdiff \| diff to current
2016-05-30	Jim Procter	JAL-1552 fix JAL-2122 resolve File->string before addin...	blob \| commitdiff \| diff to current
2016-05-26	Jim Procter	JAL-1552 refactor shared dataflavor hander	blob \| commitdiff \| diff to current
2016-05-02	gmungoc	JAL-1812 bind Groovy to Jalview rather than Desktop...	blob \| commitdiff \| diff to current
2016-04-28	gmungoc	JAL-2083 removed use of reflection for Groovy	blob \| commitdiff \| diff to current
2016-04-25	gmungoc	JAL-1812 JAL-2068 only allow one Groovy console open...	blob \| commitdiff \| diff to current
2016-04-24	Jim Procter	JAL-2077 - reinstate popups on osx	blob \| commitdiff \| diff to current
2016-04-24	Jim Procter	JAL-2075 make GroovyConsole a singleton so tests requir...	blob \| commitdiff \| diff to current
2016-04-22	gmungoc	JAL-1812 JAL-2068 add Run Groovy Script to AlignFrame...	blob \| commitdiff \| diff to current
2016-03-23	tcofoegbu	JAL-2009 added programmatic custom feature setting...	blob \| commitdiff \| diff to current
2016-02-12	gmungoc	Merge branch 'develop' into	blob \| commitdiff \| diff to current
2016-02-09	tcofoegbu	JAL-1975 updated image export pipeline to produce more...	blob \| commitdiff \| diff to current
2015-11-21	gmungoc	JAL-653 JAL-1968 FeaturesFile now handles Jalview or...	blob \| commitdiff \| diff to current
2015-10-16	Jim Procter	JAL-1925 update source version in license Release_2_9_0b2	blob \| commitdiff \| diff to current
2015-10-08	Jim Procter	JAL-1894 update year/version in copyright	blob \| commitdiff \| diff to current
2015-10-08	Jim Procter	Merge branch 'develop' into Release_2_9_0b1_Branch	blob \| commitdiff \| diff to current
2015-10-05	gmungoc	JAL-1812 set/return currentAlFrame for Groovy in headle...	blob \| commitdiff \| diff to current
2015-10-05	Jim Procter	Merge branch 'develop' into Release_2_9_0b1_Branch	blob \| commitdiff \| diff to current
2015-10-02	gmungoc	JAL-1815 restore split frame geometry including horizon...	blob \| commitdiff \| diff to current
2015-10-02	Jim Procter	JAL-1900 JAL-1625 disable iconify button for internal...	blob \| commitdiff \| diff to current
2015-09-25	gmungoc	JAL-1815 restore split frame geometry correctly includi...	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 source formatting and organise imports	blob \| commitdiff \| diff to current
2015-09-03	tcofoegbu	house keeping	blob \| commitdiff \| diff to current
2015-09-02	gmungoc	JAL-1843 fixed input/add from textbox; added @Override...	blob \| commitdiff \| diff to current
2015-09-02	Jim Procter	JAL-535 todo: refactor logic to desktop controller...	blob \| commitdiff \| diff to current
2015-08-17	gmungoc	JAL-1829 JAL-1830 refactoring for correct mapping ...	blob \| commitdiff \| diff to current
2015-07-01	gmungoc	Merge branch 'develop' into features/JAL-1759jmolUpdate	blob \| commitdiff \| diff to current
2015-06-30	gmungoc	JAL-1759 deprecated EnfinEnvision2OneWay removed	blob \| commitdiff \| diff to current
2015-06-30	tcofoegbu	JAL-1641 round trip test/refactoring	blob \| commitdiff \| diff to current
2015-06-22	Jim Procter	JAL-1780 JAL-653 Format/AppletFormat import and export...	blob \| commitdiff \| diff to current
2015-06-22	Jim Procter	JAL-653 JAL-1780 reorder imports	blob \| commitdiff \| diff to current
2015-06-10	gmungoc	JAL-1764 save Chimera/Jmol state as separate entries...	blob \| commitdiff \| diff to current
2015-06-04	gmungoc	JAL-1747 close all windows on Quit (+small bug fix)	blob \| commitdiff \| diff to current
2015-05-19	tcofoegbu	JAL-1641 Further refactoring of JSON export option...	blob \| commitdiff \| diff to current
2015-05-11	tcofoegbu	JAL-1641 cherry-picked changes into develop compatible...	blob \| commitdiff \| diff to current
2015-04-22	gmungoc	JAL-845 fix SplitFrame sizing on eXpand Views	blob \| commitdiff \| diff to current
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