Merge branch 'features/JAL-3375vcfValidation' into
[jalview.git] / src / jalview / gui / PopupMenu.java
2012-07-05 Anne MenardAdd support RNAML format
2012-05-30 jprocterJAL-1114 - refactor methods handling Vectors and Hashta...
2012-03-05 jprocter(JAL-942) clearer view structure menu entry
2012-03-05 jprocterJAL-942 - make sure rna structures get a sensible name
2012-03-01 jprocter(JAL-842) ensure deletions are accounted for when highl...
2011-10-27 jprocter(JAL-969) removed TODOs
2011-10-27 jprocter(JAL-969) refactored alignmentViewport base class to...
2011-10-21 jprocterRefactored alignment viewport to use common base, exten...
2011-10-10 jprocterupdate author list in license for (JAL-826)
2011-10-07 jproctermerge Jan and Lauren's RNA GUI changes into develop...
2011-09-27 jproctersame overzeaolous logic (JAL-915)
2011-09-27 jprocterapply version 2.7 copyright
2011-09-15 jprocterJAL-860 fixed grammar for one structure vs many structu...
2011-08-30 jprocterJAL-915 - ensured that exceptions are not raised in...
2011-08-15 janengelhardtJAL-878; Structures associated to a sequence are availa...
2011-07-25 janengelhardtsome print statements to test things
2011-07-25 janengelhardtJAL-842; Implement transmitting of Jalview Sequence...
2011-07-25 janengelhardtJAL-842; Give Varna frames name for window organizer...
2011-07-25 janengelhardtVarna external frame bug solved
2011-07-25 janengelhardtReorganize the class structure, unfortunately breaks...
2011-07-25 janengelhardtFurther structure accessing feature
2011-07-25 janengelhardtChanged location of VARNAv3-8b.jar; small changes
2011-07-25 janengelhardtjal-842; sequence transmitting to Varna included
2011-07-25 janengelhardtJAL-842, AppVarnaBinding was filled with a minimalistic...
2011-07-25 janengelhardtStart merging of Laurens Code
2011-07-09 jprocterdocumentation for menu item JAL-860
2011-07-09 jproctermenu item and constructor to open a bunch of structures...
2011-05-17 jprocterrefactor to allow distinct StructureSelectionManager...
2011-02-25 jprocterfirst approximation for JAL-782 - hint that opaque...
2011-01-07 jprocterrefactored guts of pdb file association code
2010-09-23 jprocterapply jalview code style
2010-09-23 jprocterJalview 2.6 source licence
2010-09-10 jprocterearly bail out for long urls, and threaded off group...
2010-06-06 jprocterpatch for JAL-542
2010-06-04 jprocterfocus is explicitly handed back to caller (JAL-566)
2010-06-03 jprocterpatch ensuring annotation is output correctly re *...
2010-04-30 jprocterjalview 2.5 release banner
2010-03-26 jproctermore efficient group URL generation.
2010-02-09 jproctergroupURL link prototype
2009-08-03 jprocterfix feature creation for selected region beyond end...
2009-07-24 jprocterupdate annotation when group state is changed
2009-06-08 jprocterapply gpl development license
2009-02-24 jprocteronly display unique url links (both in label and in...
2009-02-06 jproctershowUnconserved view and group setting
2009-01-07 jprocterrefactor
2008-11-12 jprocterselection sending
2008-09-09 jproctermake URL links from description string when link is...
2008-09-08 jprocterintroduced and commented out code for generating URLs...
2008-09-04 jproctermerge from 2_4_Release branch
2008-08-26 jprocternew thread for initting of DBRefFetcher with latest...
2008-08-15 jproctercatch invalid URL link exception properly
2008-08-11 jprocterregular expression based URL link generation
2008-08-06 jproctergeneration of additional URLs for DBRefs on a sequence...
2007-10-04 jprocterselected region output also supports generation of...
2007-07-13 jprocterpickmanager on sequence and alignment position, vamsas...
2007-05-07 amwaterhousePDBViewer available if necessary
2007-05-04 amwaterhouseRename AppJMol to AppJmol - also AppJmol works with...
2007-05-03 amwaterhousepdb id toUpperCase
2007-05-02 amwaterhouseconvert space to gapchar
2007-05-01 amwaterhouseCan specify PDB chain to map sequence to - only used...
2007-04-27 amwaterhouseCheck pdbid size >0
2007-04-27 amwaterhousehide annotation colouring options
2007-04-26 amwaterhouseEdit seqs
2007-04-23 amwaterhouseTest out new arrangement
2007-04-13 amwaterhouseFeatureRenderer takes alignmentPanel
2007-02-27 amwaterhouseUse paintAlignment
2007-02-07 amwaterhouseFormatting
2007-02-01 amwaterhouseset description for groups
2007-02-01 amwaterhouseOne class for edit name/description
2007-01-23 amwaterhouseHidden representatives moved from sequence to viewport
2006-11-21 amwaterhouseremove unnesccessary lines
2006-11-21 amwaterhouseUse textColourChooser
2006-11-13 amwaterhouseGroup Menu level changed
2006-11-09 amwaterhousecut and paste input output
2006-11-08 amwaterhouseDont set the dataset name and description
2006-11-06 amwaterhouseOnly recalc consensus for start to end of group
2006-11-06 amwaterhousedont limit menu size
2006-11-03 amwaterhouseRemove unnecessary refresh
2006-11-02 amwaterhouseFire align change for case change
2006-10-26 amwaterhousevoid changeCase(ActionEvent e
2006-10-24 amwaterhouseChange Case is undoable
2006-10-18 amwaterhousenew feature args
2006-10-12 amwaterhouseAdd features from Popupmenu
2006-10-12 amwaterhouseUse i, not index if not representedSeqs
2006-10-12 amwaterhouseRepresentGroup count items
2006-10-05 amwaterhouseMultiple Views
2006-09-12 amwaterhousehideSequence hide all before recalc consensus
2006-08-22 amwaterhouseTo uppercase only visible
2006-08-21 amwaterhouseheader updated
2006-08-16 amwaterhouseFire alignment changed if seqs hidden / revealed
2006-08-15 amwaterhouseWRITEABLE_FORMATS and READABLE_FORMATS string []
2006-08-14 amwaterhouseStockholm parser added
2006-08-14 amwaterhouseNo need to check selection group size
2006-08-09 amwaterhouseMake sure link menu is displayed
2006-07-25 amwaterhouseOutput menus added
2006-07-25 amwaterhouseReorder popupmenu
2006-07-25 amwaterhouseAssociate pdb files
2006-07-21 amwaterhousegetViewAsString can ignore sequenceGroup
2006-07-19 amwaterhouseOutput to text window added
2006-07-12 amwaterhousesequences are private in SequenceGroup
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