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JAL-1705 javadoc added only
[jalview.git] / src / jalview / gui /
2016-03-11 gmungocJAL-1705 refactoring etc for fetching Ensembl --> Uniprot tree | commitdiff
2016-03-07 gmungocJAL-2023 CDS sequences added to / share alignment dataset tree | commitdiff
2016-03-01 gmungocJAL-1705 align CDS and peptide products to transcripts tree | commitdiff
2016-02-25 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... tree | commitdiff
2016-02-23 tcofoegbuJAL-1720 renamed Structure Chooser filters according... tree | commitdiff
2016-02-22 tcofoegbuJAL-1720 JAL-2002 improvement for 'uniprot coverage... tree | commitdiff
2016-02-22 gmungocJAL-1705 first pass at applying preset feature colourin... tree | commitdiff
2016-02-19 gmungocJAL-1705 refactor show products, set initial split... tree | commitdiff
2016-02-19 gmungocJAL-1705 more lenient test for 'sequence retrieved' tree | commitdiff
2016-02-12 gmungocJAL-1705 various refactoring towards Uniprot-to-Ensembl... tree | commitdiff
2016-02-12 gmungocJAL-282 wrap very long id in tooltip tree | commitdiff
2016-02-12 gmungocJAL-2010 simple prototype of 'Highlight Selection'... tree | commitdiff
2016-02-12 gmungocJAL-2008 avoid unnecessary repaints; signatures changed... tree | commitdiff
2016-02-12 gmungocMerge branch 'develop' into tree | commitdiff
2016-02-09 tcofoegbuJAL-1976 Added progress indicators for HTML_SVG and... tree | commitdiff
2016-02-09 tcofoegbuJAL-1975 updated image export pipeline to produce more... tree | commitdiff
2016-02-05 gmungocJAL-2006 scale even very small score ranges to a usable... tree | commitdiff
2016-02-04 gmungocJAL-2003 export features on alignment, not alignment... tree | commitdiff
2016-01-29 gmungocJAL-1705 copy feature settings when opening a split... tree | commitdiff
2016-01-28 gmungocMerge branch 'develop' into JAL-1705_trialMerge tree | commitdiff
2016-01-25 gmungocJAL-1997 database browser support tooltip if available tree | commitdiff
2016-01-23 gmungocJAL-1355 get dialog title from message bundle tree | commitdiff
2016-01-23 gmungocJAL-1705 copy 'show sequence features' setting in ... tree | commitdiff
2016-01-21 gmungocJAL-1705 AlignmentUtils method renamed tree | commitdiff
2016-01-11 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-01-11 gmungocJAL-1989 additional ways to 'mirror' show/hide columns... tree | commitdiff
2016-01-11 tcofoegbuJAL-1990 added a progress indicator for Structure Choos... tree | commitdiff
2016-01-11 gmungocJAL-1989 more unit tests and encapsulation for ColumnSe... tree | commitdiff
2016-01-08 gmungocJAL-1705 DbSourceProxy properties converted to methods... tree | commitdiff
2016-01-05 gmungocMerge remote-tracking branch 'origin/features/JAL-1705_... tree | commitdiff
2015-12-22 gmungocJAL-653 realise virtual mappings and align when adding... tree | commitdiff
2015-12-22 gmungocJAL-391 new Calculate options to Reverse, Reverse Compl... tree | commitdiff
2015-12-22 gmungocJAL-653 AlignedCodonFrame collections changed from... tree | commitdiff
2015-12-22 gmungocJAL-653 set showSequenceFeatures=true on loading a... tree | commitdiff
2015-12-22 gmungocJAL-653 hold AlignedCodonFrame collections as list... tree | commitdiff
2015-12-03 gmungocJAL-653 code tidy / tests for 'realise gff mappings' tree | commitdiff
2015-11-30 gmungocJAL-653 (experimental) 'realise' dummy sequences in... tree | commitdiff
2015-11-30 gmungocJAL-1980 check for null alignment; JAL-1551 @Override... tree | commitdiff
2015-11-25 tcofoegbuJAL-1479 refactored DBRef fetching code to StructureCho... tree | commitdiff
2015-11-25 tcofoegbuJAL-1479 applet build debug tree | commitdiff
2015-11-25 tcofoegbuJAL-1479 bugfix after decoupling SIFTS preference settings tree | commitdiff
2015-11-21 gmungocJAL-653 JAL-1968 FeaturesFile now handles Jalview or... tree | commitdiff
2015-11-17 tcofoegbuJAL-1479 Refactored Sifts configuration preference... tree | commitdiff
2015-11-11 tcofoegbumerge tree | commitdiff
2015-11-10 tcofoegbuJAL 1960 added code to restrict structure chooser to... tree | commitdiff
2015-10-23 gmungocJAL-1943 don't try to unmarshal non-xml files in V1... tree | commitdiff
2015-10-22 tcofoegbuJAL-1479 implemented preferences for SIFTs / Needleman... tree | commitdiff
2015-10-22 tcofoegbuJAL-1942 JAL-1479 DBRefFetcher refactor tree | commitdiff
2015-10-22 gmungocJAL-1932 TrimRegionCommand bug fix, tests and purge... tree | commitdiff
2015-10-15 Jim ProcterMerge branch 'develop' into features/JAL-1705_ensembl tree | commitdiff
2015-10-15 tcofoegbuJAL-1479 refactored SequenceI interface - changed getDB... tree | commitdiff
2015-10-15 Jim ProcterJAL-1923 formatting tree | commitdiff
2015-10-15 Jim ProcterJAL-1923 add groups to codon-complement and notify... tree | commitdiff
2015-10-15 Jim ProcterJAL-1923 fix: don’t add group twice tree | commitdiff
2015-10-08 tcofoegbumerge tree | commitdiff
2015-10-07 Jim ProcterJAL-1894 source formatting tree | commitdiff
2015-10-05 gmungocJAL-1812 set/return currentAlFrame for Groovy in headle... tree | commitdiff
2015-10-05 Jim ProcterMerge branch 'develop' into features/JAL-1912_biojson... tree | commitdiff
2015-10-02 gmungocJAL-1815 restore split frame geometry including horizon... tree | commitdiff
2015-10-02 Jim ProcterJAL-1900 JAL-1625 disable iconify button for internal... tree | commitdiff
2015-09-30 tcofoegbuJAL-1912 added support of tcoffee annotation and other... tree | commitdiff
2015-09-29 tcofoegbuJAL-1896 fixed NPE for RNA Helice without equivalent... tree | commitdiff
2015-09-28 tcofoegbumerge tree | commitdiff
2015-09-28 tcofoegbuJAL-1896 revised implementation to construct a ColourSc... tree | commitdiff
2015-09-25 gmungocJAL-1859 try hoverDelay of 0.1s in Jmol for more respon... tree | commitdiff
2015-09-25 gmungocJAL-1815 restore split frame geometry correctly includi... tree | commitdiff
2015-09-24 tcofoegbuJAL-1860 keyboard operation of pdb sequence fetcher... tree | commitdiff
2015-09-21 gmungocJAL-1799 update height of annotation labels to match... tree | commitdiff
2015-09-18 tcofoegbuJAL-1774 JAL-1506 revised implementaion for clear highl... tree | commitdiff
2015-09-18 tcofoegbuJAL-1506 revised implementation to clear only selected... tree | commitdiff
2015-09-17 tcofoegbuJAL-1774 bugfix for misleading message after trying... tree | commitdiff
2015-09-16 tcofoegbumerge tree | commitdiff
2015-09-16 tcofoegbuJAL-1486 off-by-one error bugfix tree | commitdiff
2015-09-16 gmungocJAL-1885 small fix to isVersionStringLaterThan plus... tree | commitdiff
2015-09-14 gmungocJAL-1865 fixed so initial state of annotation sort... tree | commitdiff
2015-09-14 gmungocJAL-1880 handle sequence offsets properly when mapping... tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 licencing for new files in src tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports tree | commitdiff
2015-09-10 Jim ProcterJAL-1370 correct i18n message for reference sequence... tree | commitdiff
2015-09-10 Jim ProcterJAL-1370 detect any type of gap character in reference... tree | commitdiff
2015-09-07 gmungocJAL-1636 translate stop codon as '*', mouseover * as... tree | commitdiff
2015-09-06 Jim ProcterJAL-1655 transfer setting option only displayed in... tree | commitdiff
2015-09-06 Jim ProcterJAL-1645 JAL-1355 UI/i18n: added missing messages,... tree | commitdiff
2015-09-05 Jim ProcterJAL-1871 JAL-1553 don’t modify selection/view colour... tree | commitdiff
2015-09-04 Jim ProcterJAL-1847 added AUTOSUPERIMPOSE property which can be... tree | commitdiff
2015-09-03 Jim ProcterJAL-961 efficiency TODO: decouple overview updates... tree | commitdiff
2015-09-03 Jim ProcterJAL-1680 JAL-1576 JAL-1233 all conservation and consens... tree | commitdiff
2015-09-03 tcofoegbuhouse keeping tree | commitdiff
2015-09-03 tcofoegbumerge tree | commitdiff
2015-09-03 tcofoegbuJAL-1861 disable the action buttons for 1500 millisec... tree | commitdiff
2015-09-03 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-09-03 gmungocJAL-1690 scaleProteinAsCdna new optional attribute... tree | commitdiff
2015-09-03 tcofoegbuJAL-793 use default custom export settings for html... tree | commitdiff
2015-09-02 gmungocJAL-1768 set initial 'enabled' state for id width label... tree | commitdiff
2015-09-02 gmungocJAL-1768 enable fixed width output when auto-width... tree | commitdiff
2015-09-02 gmungocJAL-1843 fixed input/add from textbox; added @Override... tree | commitdiff
2015-09-02 Jim ProcterJAL-535 todo: refactor logic to desktop controller... tree | commitdiff
2015-09-01 tcofoegbuJAL-1668 house keeping tree | commitdiff
2015-08-31 tcofoegbumerge tree | commitdiff
2015-08-31 tcofoegbuJAL-1700 updated error handling with suggested improvem... tree | commitdiff
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