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JAL-2094 first pass with jalview.api.ColorI interface
[jalview.git]
/
src
/
jalview
/
gui
/
2015-12-22
gmungoc
JAL-391 new Calculate options to Reverse, Reverse Compl...
tree
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commitdiff
2015-12-22
gmungoc
JAL-653 AlignedCodonFrame collections changed from...
tree
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commitdiff
2015-12-22
gmungoc
JAL-653 set showSequenceFeatures=true on loading a...
tree
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commitdiff
2015-12-22
gmungoc
JAL-653 hold AlignedCodonFrame collections as list...
tree
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commitdiff
2015-12-03
gmungoc
JAL-653 code tidy / tests for 'realise gff mappings'
tree
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commitdiff
2015-11-30
gmungoc
JAL-653 (experimental) 'realise' dummy sequences in...
tree
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commitdiff
2015-11-30
gmungoc
JAL-1980 check for null alignment; JAL-1551 @Override...
tree
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commitdiff
2015-11-25
tcofoegbu
JAL-1479 refactored DBRef fetching code to StructureCho...
tree
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commitdiff
2015-11-25
tcofoegbu
JAL-1479 applet build debug
tree
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commitdiff
2015-11-25
tcofoegbu
JAL-1479 bugfix after decoupling SIFTS preference settings
tree
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commitdiff
2015-11-21
gmungoc
JAL-653 JAL-1968 FeaturesFile now handles Jalview or...
tree
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commitdiff
2015-11-17
tcofoegbu
JAL-1479 Refactored Sifts configuration preference...
tree
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commitdiff
2015-11-11
tcofoegbu
merge
tree
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commitdiff
2015-11-10
tcofoegbu
JAL 1960 added code to restrict structure chooser to...
tree
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commitdiff
2015-10-23
gmungoc
JAL-1943 don't try to unmarshal non-xml files in V1...
tree
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commitdiff
2015-10-22
tcofoegbu
JAL-1479 implemented preferences for SIFTs / Needleman...
tree
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commitdiff
2015-10-22
tcofoegbu
JAL-1942 JAL-1479 DBRefFetcher refactor
tree
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commitdiff
2015-10-22
gmungoc
JAL-1932 TrimRegionCommand bug fix, tests and purge...
tree
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commitdiff
2015-10-15
Jim Procter
Merge branch 'develop' into features/JAL-1705_ensembl
tree
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commitdiff
2015-10-15
tcofoegbu
JAL-1479 refactored SequenceI interface - changed getDB...
tree
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commitdiff
2015-10-15
Jim Procter
JAL-1923 formatting
tree
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commitdiff
2015-10-15
Jim Procter
JAL-1923 add groups to codon-complement and notify...
tree
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commitdiff
2015-10-15
Jim Procter
JAL-1923 fix: don’t add group twice
tree
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commitdiff
2015-10-08
tcofoegbu
merge
tree
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commitdiff
2015-10-07
Jim Procter
JAL-1894 source formatting
tree
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commitdiff
2015-10-05
gmungoc
JAL-1812 set/return currentAlFrame for Groovy in headle...
tree
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commitdiff
2015-10-05
Jim Procter
Merge branch 'develop' into features/JAL-1912_biojson...
tree
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commitdiff
2015-10-02
gmungoc
JAL-1815 restore split frame geometry including horizon...
tree
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commitdiff
2015-10-02
Jim Procter
JAL-1900 JAL-1625 disable iconify button for internal...
tree
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commitdiff
2015-09-30
tcofoegbu
JAL-1912 added support of tcoffee annotation and other...
tree
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commitdiff
2015-09-29
tcofoegbu
JAL-1896 fixed NPE for RNA Helice without equivalent...
tree
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commitdiff
2015-09-28
tcofoegbu
merge
tree
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commitdiff
2015-09-28
tcofoegbu
JAL-1896 revised implementation to construct a ColourSc...
tree
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commitdiff
2015-09-25
gmungoc
JAL-1859 try hoverDelay of 0.1s in Jmol for more respon...
tree
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commitdiff
2015-09-25
gmungoc
JAL-1815 restore split frame geometry correctly includi...
tree
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commitdiff
2015-09-24
tcofoegbu
JAL-1860 keyboard operation of pdb sequence fetcher...
tree
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commitdiff
2015-09-21
gmungoc
JAL-1799 update height of annotation labels to match...
tree
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commitdiff
2015-09-18
tcofoegbu
JAL-1774 JAL-1506 revised implementaion for clear highl...
tree
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commitdiff
2015-09-18
tcofoegbu
JAL-1506 revised implementation to clear only selected...
tree
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commitdiff
2015-09-17
tcofoegbu
JAL-1774 bugfix for misleading message after trying...
tree
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commitdiff
2015-09-16
tcofoegbu
merge
tree
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commitdiff
2015-09-16
tcofoegbu
JAL-1486 off-by-one error bugfix
tree
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commitdiff
2015-09-16
gmungoc
JAL-1885 small fix to isVersionStringLaterThan plus...
tree
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commitdiff
2015-09-14
gmungoc
JAL-1865 fixed so initial state of annotation sort...
tree
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commitdiff
2015-09-14
gmungoc
JAL-1880 handle sequence offsets properly when mapping...
tree
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commitdiff
2015-09-10
Jim Procter
JAL-1645 licencing for new files in src
tree
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commitdiff
2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
tree
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commitdiff
2015-09-10
Jim Procter
JAL-1370 correct i18n message for reference sequence...
tree
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commitdiff
2015-09-10
Jim Procter
JAL-1370 detect any type of gap character in reference...
tree
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commitdiff
2015-09-07
gmungoc
JAL-1636 translate stop codon as '*', mouseover * as...
tree
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commitdiff
2015-09-06
Jim Procter
JAL-1655 transfer setting option only displayed in...
tree
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commitdiff
2015-09-06
Jim Procter
JAL-1645 JAL-1355 UI/i18n: added missing messages,...
tree
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commitdiff
2015-09-05
Jim Procter
JAL-1871 JAL-1553 don’t modify selection/view colour...
tree
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commitdiff
2015-09-04
Jim Procter
JAL-1847 added AUTOSUPERIMPOSE property which can be...
tree
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commitdiff
2015-09-03
Jim Procter
JAL-961 efficiency TODO: decouple overview updates...
tree
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commitdiff
2015-09-03
Jim Procter
JAL-1680 JAL-1576 JAL-1233 all conservation and consens...
tree
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commitdiff
2015-09-03
tcofoegbu
house keeping
tree
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commitdiff
2015-09-03
tcofoegbu
merge
tree
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commitdiff
2015-09-03
tcofoegbu
JAL-1861 disable the action buttons for 1500 millisec...
tree
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commitdiff
2015-09-03
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2015-09-03
gmungoc
JAL-1690 scaleProteinAsCdna new optional attribute...
tree
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commitdiff
2015-09-03
tcofoegbu
JAL-793 use default custom export settings for html...
tree
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commitdiff
2015-09-02
gmungoc
JAL-1768 set initial 'enabled' state for id width label...
tree
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commitdiff
2015-09-02
gmungoc
JAL-1768 enable fixed width output when auto-width...
tree
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commitdiff
2015-09-02
gmungoc
JAL-1843 fixed input/add from textbox; added @Override...
tree
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commitdiff
2015-09-02
Jim Procter
JAL-535 todo: refactor logic to desktop controller...
tree
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commitdiff
2015-09-01
tcofoegbu
JAL-1668 house keeping
tree
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commitdiff
2015-08-31
tcofoegbu
merge
tree
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commitdiff
2015-08-31
tcofoegbu
JAL-1700 updated error handling with suggested improvem...
tree
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commitdiff
2015-08-27
gmungoc
JAL-1830 refactored so no jalview.gui references from...
tree
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commitdiff
2015-08-27
gmungoc
JAL-845 compacting duplicated code
tree
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commitdiff
2015-08-27
gmungoc
JAL-1611 debug sysout suppressed
tree
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commitdiff
2015-08-26
gmungoc
JAL-1830 dropped reference counts for mappings, instead...
tree
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commitdiff
2015-08-26
gmungoc
JAL-1840 correct setting status bar for structure mouseover
tree
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commitdiff
2015-08-25
gmungoc
JAL-1780 just a spelling change
tree
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commitdiff
2015-08-21
tcofoegbu
clean up
tree
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commitdiff
2015-08-21
tcofoegbu
JAL-1780 changed 'Check All' to 'Select All' and extern...
tree
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commitdiff
2015-08-20
tcofoegbu
merge
tree
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commitdiff
2015-08-20
tcofoegbu
JAL-1833 revised implementation
tree
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commitdiff
2015-08-20
gmungoc
JAL-1833 added unit tests (some failing) for wrapToolitp
tree
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commitdiff
2015-08-19
gmungoc
JAL-1742 suppress 'add chain' option for Jmol, pull...
tree
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commitdiff
2015-08-18
tcofoegbu
JAL-1835 added UI for BioJSON embbeding preference
tree
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commitdiff
2015-08-18
tcofoegbu
JAL-1834 added tooltip to the PDB sequence fetcher...
tree
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commitdiff
2015-08-18
tcofoegbu
JAL-1833 modified tooltip to force wraping of long...
tree
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commitdiff
2015-08-17
tcofoegbu
merge
tree
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commitdiff
2015-08-17
tcofoegbu
JAL-1832 improvement to enable result update only when...
tree
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commitdiff
2015-08-17
gmungoc
JAL-1829 JAL-1830 refactoring for correct mapping ...
tree
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commitdiff
2015-08-17
gmungoc
JAL-1800 smarter matching when following mouseover...
tree
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commitdiff
2015-08-17
gmungoc
JAL-1691 scan full width and depth of alignment for...
tree
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commitdiff
2015-08-13
tcofoegbu
JAL-1826 bug fix to select pdb sequence fetcher via...
tree
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commitdiff
2015-08-10
tcofoegbu
JAL-1486 fixed flatfile output of visible region for...
tree
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commitdiff
2015-08-07
tcofoegbu
JAL-1824 updated caching procedure for pdb entries...
tree
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commitdiff
2015-08-06
tcofoegbu
merge
tree
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commitdiff
2015-08-06
tcofoegbu
JAL-1824 corrected copy'n'paste error introduced from...
tree
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commitdiff
2015-08-05
Jim Procter
JAL-1821 formatting
tree
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commitdiff
2015-08-05
Jim Procter
JAL-1821 launch the structure view in a separate thread...
tree
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commitdiff
2015-08-05
Jim Procter
JAL-1822 create dataset sequences if they aren’t alread...
tree
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commitdiff
2015-08-05
Jim Procter
JAL-1821 JAL-1759 make sure we wait around until the...
tree
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commitdiff
2015-08-04
tcofoegbu
JAL-1821 updated implementation of launchStructureViewe...
tree
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commitdiff
2015-08-04
tcofoegbu
updated the reference sequence column of cached structu...
tree
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commitdiff
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