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Merge branch 'develop' into bug/JAL-4059_update_swingJS_for_JalviewJS_2_11_2_and_2_11_3
[jalview.git]
/
src
/
jalview
/
io
/
FileLoader.java
2023-10-12
Ben Soares
JAL-3772 Fix the logic of prompt to save URL loaded...
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2023-10-11
Ben Soares
JAL-3772 Preference to NOT prompt to save remotely...
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diff to current
2023-09-07
James Procter
JAL-4279 suppress error dialogs raised by file loader...
improvement/JAL-4279_gracefully_handle_failure_to_openviaCLI
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diff to current
2023-08-18
Ben Soares
Merge branch 'improvement/JAL-4206_improve_JalviewFileC...
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diff to current
2023-08-10
Ben Soares
JAL-629 Change all stdout and stderr output to use...
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diff to current
2023-06-15
Ben Soares
JAL-4206 Use All Known Alignment Files as default until...
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diff to current
2023-04-19
Ben Soares
JAL-629 Now showing temp fac and secondary structure...
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commitdiff
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diff to current
2023-03-24
Ben Soares
JAL-629 Test tidyup
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diff to current
2023-03-23
Ben Soares
JAL-629 refactor ArgParser and helper classes all to...
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diff to current
2023-03-15
Ben Soares
JAL-629 Commands more objecty, less classy. FileLoader...
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diff to current
2023-02-22
Ben Soares
Merge branch 'develop' into features/r2_11_2_alphafold...
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diff to current
2023-02-20
Ben Soares
Merge branch 'develop' into bug/JAL-4125_flatlaf_quitha...
bug/JAL-4125_flatlaf_quithandler_warning_doesnt_display_properly
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2023-02-16
James Procter
Merge branch 'features/r2_11_2_alphafold/JAL-629' into...
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diff to current
2023-01-31
James Procter
JAL-1713 update from Jalview 2.11.3 develop
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diff to current
2023-01-30
Ben Soares
JAL-1988 Make sensible choices if only the opening...
merge/JAL-1988_JAL-3772+JAL-3416+JAL-4054+JAL-4064
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diff to current
2023-01-11
Ben Soares
JAL-629 refactoring TFType. Remove i18n identification...
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diff to current
2022-12-05
Ben Soares
JAL-629 implementation of --tempfac options
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diff to current
2022-11-01
Ben Soares
JAL-1988 JAL-3772 Change default alignmentviewport...
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diff to current
2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
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diff to current
2022-02-11
Ben Soares
JAL-3949 Complete new abstracted logging framework...
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2022-02-07
Jim Procter
Merge branch 'feature/JAL-1713_overviewInProject' into...
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2022-02-07
Jim Procter
JAL-3785 JAL- Merge branch 'bug/JAL-3785autoOverviewTit...
bug/JAL-3785autoOverviewTitle
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2021-09-02
gmungoc
JAL-3509 JAL-1842 minor tidying of code
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2020-12-12
gmungoc
JAL-1713 JAL-3119 JAL-3785 refactored get/set Overview...
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2020-12-11
gmungoc
JAL-3785 set full title on automatically opened Overvie...
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commitdiff
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diff to current
2020-04-21
gmungoc
JAL-3603 load annotation file from RELATIVE_URL in...
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2020-02-06
gmungoc
JAL-3509 JAL-1842 minor tidying of code
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2019-07-16
gmungoc
JAL-3210 Merge branch 'develop' into trialMerge
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2019-04-18
hansonr
explicit Hashtable objects
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2019-04-17
gmungoc
JAL-3026 fix bug loading Jalview Project (in Java)
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commitdiff
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diff to current
2019-03-27
hansonr
consolidation of Platform isJS calls
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commitdiff
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diff to current
2019-03-19
Ben Soares
JAL-3130 Merge of JAL-3130_Java_11_investigations-Ben...
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2019-03-01
gmungoc
Merge branch 'feature/JAL-3093wrappedModeTooltips'...
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diff to current
2018-12-13
Ben Soares
JAL-3130 Attempting to fix 8 tests that pass on a Mac...
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2018-12-06
Ben Soares
JAL-3130 incorporating feature/JAL-3063jaxbNoCastor...
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diff to current
2018-11-06
hansonr
JAXB marshalling by JavaScript successfully unmarshalle...
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diff to current
2018-11-02
hansonr
Marshalling produces valid ZIP file. Unmarshalling...
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2018-10-17
Jim Procter
Merge branch 'feature/JAL-3063JAXB' into Jalview-BH...
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2018-10-04
gmungoc
JAL-3132 set status message when over sequence id or...
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2018-09-19
gmungoc
JAL-3063 use JAXB for 'Save as Project' and load projec...
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2018-08-27
hansonr
JAL-3026 alignmentFrame.statusBar.setText -> .setStatus
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2018-08-24
hansonr
JAL-3026 GD#107,128,130,139 build-site.xml
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2018-07-02
hansonr
JAL-3026 File...Reload working
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2018-06-28
hansonr
JAL-3032 DND enabled; additional io changes for File...
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2018-06-27
hansonr
JAL-3032 part2 local file reading by JFileChooser
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2018-06-20
gmungoc
JAL-3032 simplified _LoadFileWaitTillLoaded with no...
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2018-06-20
hansonr
JAL-3032 FileLoader fixes for SwingJS
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2017-10-27
gmungoc
JAL-1793 spike branch updated to latest
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2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
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2017-09-01
gmungoc
JAL-2488 remove finalize methods
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2017-08-16
Jim Procter
JAL-2418 source formatting
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2017-06-09
gmungoc
JAL-2446 merged to spike branch
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2017-05-29
Jim Procter
Merge branch 'features/JAL-2465_No-mapping_Jmol-structu...
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2017-05-26
tcofoegbu
JAL-2465 Improvement to re-instate storing recently...
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commitdiff
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diff to current
2017-05-26
tcofoegbu
JAL-2465 fix to prevent files loaded from the system...
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commitdiff
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diff to current
2017-05-15
tcofoegbu
JAL-2520 improvement to use URL leaf name for creating...
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commitdiff
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diff to current
2017-05-09
tcofoegbu
JAL-2520 improvement to download and update structure...
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diff to current
2017-04-24
kiramt
JAL-2388 Hidden cols separated from column selection...
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commitdiff
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diff to current
2017-01-11
gmungoc
JAL-2344 separated AlignmentFileI into AlignmentFileRea...
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2017-01-11
gmungoc
JAL-2344 FileFormats singleton for formats, FileFormatI...
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2016-12-04
Jim Procter
JAL-2349 add dummy contact for both applet and application
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2016-12-04
Jim Procter
JAL-2349 dummy contact matrix annotation row
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2016-11-28
gmungoc
Merge branch 'develop' into trialMerge
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commitdiff
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2016-11-25
gmungoc
JAL-2344 use .equals() to compare FileFormatI objects
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2016-11-24
tcofoegbu
JAL-2326 updated references of JOptionPane to JvOptionPane
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diff to current
2016-11-24
gmungoc
FileFormatI further tweaks, clean compile
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diff to current
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
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diff to current
2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
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commitdiff
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diff to current
2016-07-12
gmungoc
FileFormat enum wip changes
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commitdiff
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diff to current
2016-07-11
gmungoc
file format enum wip changes
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commitdiff
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diff to current
2016-03-23
tcofoegbu
JAL-2009 added programmatic custom feature setting...
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commitdiff
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diff to current
2015-12-22
gmungoc
JAL-653 set showSequenceFeatures=true on loading a...
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commitdiff
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2015-11-21
gmungoc
JAL-653 JAL-1968 FeaturesFile now handles Jalview or...
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commitdiff
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diff to current
2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
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commitdiff
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2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
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commitdiff
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diff to current
2015-10-05
Jim Procter
Merge branch 'develop' into Release_2_9_0b1_Branch
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commitdiff
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2015-09-29
tcofoegbu
JAL-1896 fixed NPE for RNA Helice without equivalent...
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commitdiff
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diff to current
2015-09-28
tcofoegbu
JAL-1896 revised implementation to construct a ColourSc...
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commitdiff
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diff to current
2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
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commitdiff
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diff to current
2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
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commitdiff
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diff to current
2015-09-02
gmungoc
JAL-1355 User error text externalised to message bundle
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commitdiff
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diff to current
2015-08-21
tcofoegbu
JAL-1443 bug fix for loading pasted alignments from...
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commitdiff
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diff to current
2015-08-07
tcofoegbu
JAL-1824 updated caching procedure for pdb entries...
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commitdiff
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diff to current
2015-07-30
tcofoegbu
JAL-1443 modified exception notifications
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commitdiff
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diff to current
2015-07-21
tcofoegbu
JAL-1443 bugfix to prevent loading of unidentifiable...
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commitdiff
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diff to current
2015-07-08
gmungoc
JAL-1759 merge from develop
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commitdiff
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diff to current
2015-07-02
tcofoegbu
JAL-1443 data validation for empty content before loadi...
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commitdiff
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diff to current
2015-06-30
tcofoegbu
JAL-1641 round trip test/refactoring
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commitdiff
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diff to current
2015-06-25
Jim Procter
JAL-1780 JAL-653 JAL-1892 brackets in wrong place broke...
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commitdiff
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diff to current
2015-06-17
Jim Procter
Merge branch 'develop' into features/JAL-653_gffalignments
features/JAL-653_gffalignments
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commitdiff
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diff to current
2015-06-15
Jim Procter
JAL-1775 FileLoader javadoc
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commitdiff
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diff to current
2015-06-15
Jim Procter
JAL-1775 fix regression from commit 70f9c4700f20a8fa57e...
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commitdiff
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diff to current
2015-06-12
tcofoegbu
JAL-1641 refactor
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commitdiff
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diff to current
2015-06-05
tcofoegbu
JAL-1760 JAL-1641 Serialisation of Hidden Seqs and...
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commitdiff
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diff to current
2015-06-05
Jim Procter
JAL-653 JAL-966 TODO and avoid NPE when desktop instanc...
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commitdiff
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diff to current
2015-05-20
tcofoegbu
JAL-1541 minor code clean up, and added test for BioJsH...
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diff to current
2015-05-19
tcofoegbu
JAL-1641 Further refactoring of JSON export option...
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diff to current
2015-05-11
tcofoegbu
JAL-1641 cherry-picked changes into develop compatible...
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diff to current
2015-03-26
gmungoc
Merge develop to Release_2_8_3_Branch
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commitdiff
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diff to current
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
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