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JAL-3933 remove obsolete Castor logging configuration
[jalview.git] / src / jalview / io / gff /
2020-01-24 gmungocJAL=3121 more data format validation/tests, help text... feature/JAL-3121gffAttributeMap tree | commitdiff
2020-01-23 gmungocJAL-3121 'attributes map' in GFF3 without special ... tree | commitdiff
2019-08-22 gmungocJAL-3121 slightly cleaner parsing of, and unit test... tree | commitdiff
2019-08-22 gmungocJAL-3121 round trip GFF attributes including map-valued... tree | commitdiff
2019-06-13 gmungocJAL-3143 recognise lnc_RNA as transcript tree | commitdiff
2018-01-30 gmungocJAL-1793 update spike build to latest incl stop and... tree | commitdiff
2018-01-30 gmungocJAL-2898 show 'stop_gained' variants on peptide sequences tree | commitdiff
2018-01-30 gmungocJAL-2897 generate peptide variants for synonymous codon... tree | commitdiff
2017-12-01 gmungocJAL-2835 spike updated to latest (use specific SO term... tree | commitdiff
2017-12-01 gmungocJAL-2835 additional sub-terms of sequence_variant added tree | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo tree | commitdiff
2017-09-25 gmungocJAL-2738 one constant in codebase for "alleles" attribu... tree | commitdiff
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList tree | commitdiff
2017-08-16 Jim ProcterJAL-2418 source formatting tree | commitdiff
2017-06-09 gmungocJAL-2446 merged to spike branch tree | commitdiff
2017-05-25 gmungocJAL-2050 make SequenceFeature.score final, adjust const... tree | commitdiff
2017-05-16 gmungocJAL-2505 refactor to set type and group in SequenceFeat... tree | commitdiff
2017-05-09 gmungocJAL-2505 use constructors to set (what will be) final... tree | commitdiff
2016-10-05 Jim ProcterJAL-2189 apply license tree | commitdiff
2016-10-05 Jim ProcterJAL-2189 source formatting tree | commitdiff
2016-10-05 gmungocJAL-1191 revert to using SequenceOntologyLite due to... tree | commitdiff
2016-10-05 gmungocJAL-1191 configure full SO for desktop, SOLite for... tree | commitdiff
2016-10-05 gmungocJAL-1191 use full SO in desktop application tree | commitdiff
2016-10-05 gmungocJAL-1191 refined warning message tree | commitdiff
2016-10-05 gmungocJAL-1191 added mRNA isA transcript to SequenceOntologyL... tree | commitdiff
2016-04-14 gmungocJAL-2041 add ID,clinical_significance to feature attrib... tree | commitdiff
2016-03-22 gmungocJAL-1191 isolated SequenceOntology (BioJava wrapper... tree | commitdiff
2016-02-19 gmungocJAL-1705 JAL-1191 more terms added to hard-coded version tree | commitdiff
2016-02-12 gmungocJAL-1191 additions to SOLite, tweak to test tree | commitdiff
2016-02-12 gmungocJAL-1705 take feature ID for description if nothing... tree | commitdiff
2016-02-01 gmungocJAL-1705 further unit tests tree | commitdiff
2016-02-01 gmungocJAL-1191 more terms added to SequenceOntologyLite tree | commitdiff
2016-02-01 gmungocJAL-1705 JAL-1191 SequenceOntologyLite added as hard... tree | commitdiff
2016-01-27 gmungocJAL-1705 add exon name to features and render on peptid... tree | commitdiff
2016-01-26 gmungocJAL-1705 derive transcript sequences from gene sequence... tree | commitdiff
2016-01-25 gmungocJAL-1705 EnsemblGene added, and related refactoring tree | commitdiff
2016-01-23 gmungocJAL-1705 compute peptide variants from dna; add "conseq... tree | commitdiff
2016-01-21 gmungocJAL-653 refactor / tidy tree | commitdiff
2016-01-21 gmungocJAL-653 JAL-1705 set strand for GFF sequence feature tree | commitdiff
2016-01-21 gmungocJAL-653 comments/javadoc tidy only tree | commitdiff
2016-01-21 gmungocJAL-1705 added isSequenceVariant(), commonly used SO... tree | commitdiff
2016-01-12 gmungocJAL-1191 cache isA (great-)grandparents as well for... tree | commitdiff
2016-01-05 gmungocJAL-1191 check for obsolete term when descriptions... tree | commitdiff
2015-12-23 gmungocJAL-1191 zipped SO OBO file added to /resources, more... tree | commitdiff
2015-12-22 gmungocJAL-1191 and provide the SO OBO file in /resources :-) tree | commitdiff
2015-12-22 gmungocJAL-1191 SequenceOntology wrapping/caching SO.OBO via... tree | commitdiff
2015-12-22 gmungocJAL-1191 stub class for a SequenceOntology wrapper tree | commitdiff
2015-12-22 gmungocJAL-653 GFF new/refactored helper classes tree | commitdiff