2017-10-24 |
gmungoc | JAL-2743 slightly fancier species/assembly matching... |
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2017-10-24 |
gmungoc | JAL-2738 update spike branch with latest |
tree | commitdiff |
2017-10-24 |
gmungoc | Merge branch 'develop' into features/JAL-1793VCF; lambd... |
tree | commitdiff |
2017-10-20 |
gmungoc | Push 1793 latest to spike branch |
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2017-10-20 |
gmungoc | JAL-2755 update caller for method rename! |
tree | commitdiff |
2017-10-19 |
gmungoc | JAL-2755 put chromosomal dbref first in report |
tree | commitdiff |
2017-10-12 |
Jim Procter | JAL-2773 add new flag to paintAlignment(updateOverview... features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview |
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2017-10-11 |
gmungoc | JAL-2738 javadoc correction |
tree | commitdiff |
2017-10-09 |
gmungoc | JAL-2738 ensure variant feature is in forward sense |
tree | commitdiff |
2017-10-09 |
gmungoc | JAL-2738 remove commented code, unit test coverage |
tree | commitdiff |
2017-10-05 |
gmungoc | JAL-2738 update spikes/mungo |
tree | commitdiff |
2017-10-05 |
gmungoc | JAL-2738 warn (in console) when non chromosomal coordin... |
tree | commitdiff |
2017-10-04 |
gmungoc | JAL-2738 fix bug of premature exit from adding attributes |
tree | commitdiff |
2017-10-04 |
gmungoc | JAL-2738 match consequence "Allele" to VCF allele;... |
tree | commitdiff |
2017-10-03 |
gmungoc | JAL-2738 copy to spikes/mungo |
tree | commitdiff |
2017-10-03 |
gmungoc | JAL-2738 code formatting |
tree | commitdiff |
2017-10-02 |
gmungoc | JAL-2738 code tidy up, null checks &c |
tree | commitdiff |
2017-10-02 |
gmungoc | JAL-2738 filter VEP consequence data to that for curren... |
tree | commitdiff |
2017-09-29 |
gmungoc | JAL-2738 one sequence feature per (SNP) VCF allele |
tree | commitdiff |
2017-09-28 |
gmungoc | JAL-2738 separate thread to load VCF; update FeatureSet... |
tree | commitdiff |
2017-09-28 |
gmungoc | JAL-1796 GeneLociI as distinguished DBRefEntry |
tree | commitdiff |
2017-09-26 |
gmungoc | JAL-2738 transfer VCF variant features to CDS sequences |
tree | commitdiff |
2017-09-26 |
gmungoc | JAL-2738 unit test for reverse strand gene |
tree | commitdiff |
2017-09-25 |
gmungoc | JAL-2738 use complement base for a VCF variant on rever... |
tree | commitdiff |
2017-09-25 |
gmungoc | JAL-2738 one constant in codebase for "alleles" attribu... |
tree | commitdiff |
2017-09-25 |
gmungoc | JAL-2738 extract SNP variants from SNP or MIXED variant... |
tree | commitdiff |
2017-09-22 |
gmungoc | JAL-2738 extract utility method to MappingUtils |
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2017-09-22 |
gmungoc | JAL-2738 correct handling of reverse strand genes |
tree | commitdiff |
2017-09-22 |
gmungoc | JAL-2738 lookup GRCh38/37 gene mapping |
tree | commitdiff |
2017-09-21 |
gmungoc | JAL-2738 compute VCF on peptide, extract AF (allele... |
tree | commitdiff |
2017-09-21 |
gmungoc | JAL-2738 PoC of Load VCF file on to gene sequence |
tree | commitdiff |
2017-09-01 |
gmungoc | JAL-2488 remove finalize methods |
tree | commitdiff |
2017-08-21 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList |
tree | commitdiff |
2017-08-16 |
Jim Procter | JAL-2418 add GPL to main sources |
tree | commitdiff |
2017-08-16 |
Jim Procter | JAL-2418 source formatting |
tree | commitdiff |
2017-07-24 |
gmungoc | spike branch updated from latest features/JAL-2446 |
tree | commitdiff |
2017-06-27 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-06-14 |
gmungoc | JAL-2598 Sequence.getSequence return a copy of the... |
tree | commitdiff |
2017-06-09 |
gmungoc | JAL-2446 merged to spike branch |
tree | commitdiff |
2017-06-07 |
kiramt | JAL-2591 Hidden columns regions can be output to string... |
tree | commitdiff |
2017-06-07 |
kiramt | JAL-2591 simplifying hidden columns usage |
tree | commitdiff |
2017-06-02 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-06-01 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-06-01 |
Jim Procter | Merge branch 'features/JAL-1648_cache_user_inputs'... |
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2017-05-31 |
tcofoegbu | Fixed failing tests |
tree | commitdiff |
2017-05-30 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-05-29 |
Jim Procter | Merge branch 'features/JAL-2465_No-mapping_Jmol-structu... |
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2017-05-29 |
Jim Procter | JAL-2533 update javadoc features/JAL-2465_No-mapping_Jmol-structures-loaded-via-url |
tree | commitdiff |
2017-05-26 |
tcofoegbu | JAL-2465 Improvement to re-instate storing recently... |
tree | commitdiff |
2017-05-26 |
tcofoegbu | JAL-2465 fix to prevent files loaded from the system... |
tree | commitdiff |
2017-05-25 |
gmungoc | JAL-2557 removal of Sequence.sequenceFeatures |
tree | commitdiff |
2017-05-25 |
Jim Procter | Merge branch 'develop' into features/JAL-1648_cache_use... |
tree | commitdiff |
2017-05-25 |
gmungoc | JAL-2050 make SequenceFeature.score final, adjust const... |
tree | commitdiff |
2017-05-25 |
gmungoc | JAL-2490 test coverage of empty and null feature group... |
tree | commitdiff |
2017-05-23 |
gmungoc | JAL-2490 find features for export as GFF, JAL-2548... |
tree | commitdiff |
2017-05-23 |
gmungoc | JAL-2490 tidy code and tests for feature export in... |
tree | commitdiff |
2017-05-23 |
gmungoc | JAL-2490 improved lookup of features for Export Feature... |
tree | commitdiff |
2017-05-22 |
gmungoc | JAL-2505 use setter not direct access to sf.description |
tree | commitdiff |
2017-05-22 |
gmungoc | JAL-2543 identify as JSON before HTML |
tree | commitdiff |
2017-05-22 |
gmungoc | JAL-2546 JAL-2490 efficient lookup of features, correct... |
tree | commitdiff |
2017-05-19 |
gmungoc | JAL-2490 refactored test for 'hasFeatures' |
tree | commitdiff |
2017-05-16 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-05-16 |
gmungoc | JAL-2505 refactor to set type and group in SequenceFeat... |
tree | commitdiff |
2017-05-15 |
Jim Procter | Merge branch 'bug/JAL-2507_rnasecstrstockholm' into... |
tree | commitdiff |
2017-05-15 |
Jim Procter | JAL-2507 capitalisation for annotation lines generated... |
tree | commitdiff |
2017-05-15 |
Jim Procter | JAL-2507 case insensitive recognition of annotation... |
tree | commitdiff |
2017-05-15 |
Jim Procter | JAL-2535 quick hack to implement posterior probabilitie... |
tree | commitdiff |
2017-05-15 |
tcofoegbu | JAL-2520 improvement to use URL leaf name for creating... |
tree | commitdiff |
2017-05-15 |
tcofoegbu | JAL-2533 improvement to prune off file extension when... |
tree | commitdiff |
2017-05-15 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-05-12 |
Jim Procter | Merge branch 'features/JAL-2388OverviewWindow' into... |
tree | commitdiff |
2017-05-11 |
Jim Procter | JAL-2509 JAL-2507 allow whitespace in GS annotation... |
tree | commitdiff |
2017-05-09 |
Jim Procter | JAL-2509 extend set of brackets recognised by stockholm... |
tree | commitdiff |
2017-05-09 |
tcofoegbu | JAL-2520 improvement to download and update structure... |
tree | commitdiff |
2017-05-09 |
Jim Procter | JAL-2507 unpaired RNA marked as ‘ ‘ in Stockholm SS... |
tree | commitdiff |
2017-05-09 |
Jim Procter | JAL-2507 output secondary structure regardless of prese... |
tree | commitdiff |
2017-05-09 |
gmungoc | JAL-2505 use constructors to set (what will be) final... |
tree | commitdiff |
2017-05-08 |
gmungoc | JAL-2505 set type,desc,begin,end,group,score in Sequenc... |
tree | commitdiff |
2017-05-08 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-05-05 |
kiramt | Merge remote-tracking branch |
tree | commitdiff |
2017-05-05 |
tcofoegbu | JAL-2484 adjusted default cache settings panel's left... |
tree | commitdiff |
2017-05-05 |
kiramt | Merge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges |
tree | commitdiff |
2017-05-05 |
kiramt | Merge remote-tracking branch 'origin/develop' into |
tree | commitdiff |
2017-05-04 |
tcofoegbu | JAL-1648 improvements: enter key closes the popup and... |
tree | commitdiff |
2017-05-04 |
tcofoegbu | JAL-1648 resolved CR-JAL-41 review issues |
tree | commitdiff |
2017-05-04 |
Jim Procter | fix for JAL-2509 - don’t replace all bracket types... |
tree | commitdiff |
2017-05-04 |
Jim Procter | fix for JAL-2507 - resolve stockholm per residue annota... |
tree | commitdiff |
2017-05-02 |
gmungoc | JAL-2499 JAL-2403 push 'configure for view' inside... |
tree | commitdiff |
2017-05-02 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices |
tree | commitdiff |
2017-05-01 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-05-01 |
gmungoc | JAL-2489 JAL-2371 reinstate calls to |
tree | commitdiff |
2017-04-28 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices |
tree | commitdiff |
2017-04-27 |
gmungoc | JAL-2492 use SequenceFeatures.getNonPositionalFeatures() |
tree | commitdiff |
2017-04-26 |
kiramt | Merge remote-tracking branch 'origin/develop' into... |
tree | commitdiff |
2017-04-26 |
kiramt | Merge remote-tracking branch 'origin/develop' into... |
tree | commitdiff |
2017-04-26 |
gmungoc | JAL-2490 findFeaturesAtRes with performant feature... |
tree | commitdiff |
2017-04-25 |
tcofoegbu | JAL-2489 bug fix |
tree | commitdiff |
2017-04-25 |
kiramt | JAL-2388 Working hidden regions hide/show in desktop |
tree | commitdiff |
2017-04-24 |
tcofoegbu | JAL-1648 House keeping |
tree | commitdiff |
2017-04-24 |
kiramt | JAL-2388 Finished split of hidden columns and selected... |
tree | commitdiff |
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