2020-08-05 |
gmungoc | JAL-3692 parse multiline feature qualifiers and escaped... |
tree | commitdiff |
2020-08-03 |
gmungoc | JAL-3692 set CDS /product as EMBLCDSPROTEIN description |
tree | commitdiff |
2020-08-03 |
gmungoc | JAL-3692 refactor/complete parsing, more unit test... |
tree | commitdiff |
2020-08-03 |
gmungoc | JAL-3692 parse DE for description, and other refactoring... |
tree | commitdiff |
2020-08-03 |
gmungoc | JAL-3692 unit test (J03321), fixes, dbrefs; todo: prote... |
tree | commitdiff |
2020-08-03 |
gmungoc | JAL-3692 EMBL flatfile fetcher / parser (todo: CDS... |
tree | commitdiff |
2020-07-28 |
Jim Procter | JAL-2656 recognise non-HTTP URI input streams as gzippe... |
tree | commitdiff |
2020-07-28 |
Jim Procter | JAL-2656 recognise Gzipped file input streams by their... |
tree | commitdiff |
2020-07-27 |
gmungoc | JAL-2656 JAL-3615 check response headers to test for... |
tree | commitdiff |
2020-07-27 |
gmungoc | JAL-3615 used gzip endpoints for Pfam and Rfam |
tree | commitdiff |
2020-07-27 |
Jim Procter | JAL-3696 log the error message from the exception to... |
tree | commitdiff |
2020-04-21 |
Jim Procter | JAL-3407 add GPL license to Jalview source files |
tree | commitdiff |
2020-04-21 |
Jim Procter | Merge branch 'bug/JAL-3567virtualFeatureCoordinates... |
tree | commitdiff |
2020-04-17 |
gmungoc | JAL-3567 unit tests for linked feature tooltips |
tree | commitdiff |
2020-04-16 |
gmungoc | JAL-3567 report mapped location for virtual features... |
tree | commitdiff |
2020-04-14 |
Jim Procter | Merge branch 'bug/JAL-3529_uniprotidsinstockholm' into... |
tree | commitdiff |
2020-03-30 |
Jim Procter | JAL-3407 JAL-3130 back out java 9+ syntax that breaks... |
tree | commitdiff |
2020-03-06 |
gmungoc | Merge branch 'feature/JAL-3468featureDescriptionEllipsi... |
tree | commitdiff |
2020-03-04 |
Ben Soares | JAL-3468 small tidy |
tree | commitdiff |
2020-03-04 |
Ben Soares | JAL-3468 improvement to feature description truncation... |
tree | commitdiff |
2020-03-04 |
Ben Soares | JAL-3468 Obsessively fixed self-closing <br/> tags |
tree | commitdiff |
2020-03-03 |
soares | JAL-3468 Adapted methods to report how many features... |
tree | commitdiff |
2020-02-18 |
Jim Procter | JAL-3529 attempt to guess database for a sequence’s... |
tree | commitdiff |
2020-02-14 |
Jim Procter | JAL-3532 TODO comment |
tree | commitdiff |
2020-02-14 |
Jim Procter | JAL-3529 preferentially output source dbrefs or princip... |
tree | commitdiff |
2020-01-28 |
gmungoc | Merge branch 'feature/JAL-3121gffAttributeMap' into... |
tree | commitdiff |
2020-01-24 |
gmungoc | JAL=3121 more data format validation/tests, help text... feature/JAL-3121gffAttributeMap |
tree | commitdiff |
2020-01-23 |
gmungoc | JAL-3121 'attributes map' in GFF3 without special ... |
tree | commitdiff |
2019-11-01 |
Ben Soares | JAL-3474 removed all .cvsignore files stored in the... improvement/JAL-3474_lots_of_.cvsignore_files |
tree | commitdiff |
2019-10-31 |
gmungoc | JAL-3468 truncate feature description to 40 chars in... |
tree | commitdiff |
2019-08-22 |
gmungoc | JAL-3121 slightly cleaner parsing of, and unit test... |
tree | commitdiff |
2019-08-22 |
gmungoc | JAL-3121 round trip GFF attributes including map-valued... |
tree | commitdiff |
2019-07-26 |
gmungoc | Merge branch 'features/JAL-3375vcfValidation' into |
tree | commitdiff |
2019-07-26 |
gmungoc | JAL-1793 only decode specific special characters in... |
tree | commitdiff |
2019-07-26 |
gmungoc | JAL-3376 capture VCF POS, ID, QUAL, FILTER as feature... features/JAL-3375vcfValidation |
tree | commitdiff |
2019-07-26 |
gmungoc | JAL-3375 format validate VCF Integer and Float fields |
tree | commitdiff |
2019-07-25 |
gmungoc | JAL-3375 ignore '.' values for VCF data |
tree | commitdiff |
2019-07-10 |
gmungoc | Merge branch 'develop' into feature/JAL-3187linkedFeatures |
tree | commitdiff |
2019-07-08 |
gmungoc | JAL-3187 derived peptide variants tweaks and tests |
tree | commitdiff |
2019-07-05 |
gmungoc | JAL-1793 apply URL decoding when saving VCF attribute... |
tree | commitdiff |
2019-06-18 |
gmungoc | JAL-3187 javadoc |
tree | commitdiff |
2019-06-18 |
gmungoc | JAL-3304 option to export linked features also for... |
tree | commitdiff |
2019-06-18 |
gmungoc | JAL-3304 option to export linked features in Jalview... |
tree | commitdiff |
2019-06-13 |
gmungoc | JAL-3143 recognise lnc_RNA as transcript |
tree | commitdiff |
2019-06-07 |
gmungoc | Merge branch 'develop' into feature/JAL-3187linkedFeatures |
tree | commitdiff |
2019-06-07 |
gmungoc | JAL-2738 use GeneLocus extends DBRefEntry to hold chrom... |
tree | commitdiff |
2019-06-06 |
gmungoc | Merge branch 'develop' into trialMerge |
tree | commitdiff |
2019-05-29 |
gmungoc | JAL-2738 error logging if no ##reference found |
tree | commitdiff |
2019-05-29 |
gmungoc | JAL-2738 accept .csi, default to GRCh37:homo_sapiens... |
tree | commitdiff |
2019-05-27 |
Ben Soares | JAL-3141 Added HashMap types for Java 1.8 compatibility |
tree | commitdiff |
2019-05-25 |
Ben Soares | JAL-3141 One more error log fix |
tree | commitdiff |
2019-05-25 |
Ben Soares | JAL-3141 Added tooltips on Schemes dropdown and Customi... |
tree | commitdiff |
2019-05-24 |
Ben Soares | JAL-3141 Fixes recommended from gmc's test |
tree | commitdiff |
2019-05-24 |
Ben Soares | JAL-3141 Reworked a lot of BackupFiles to allow the... |
tree | commitdiff |
2019-04-29 |
gmungoc | JAL-2738 JAL-2743 update unit test to match new VCF... |
tree | commitdiff |
2019-04-26 |
gmungoc | JAL-2738 JAL-2743 properties to map VCF header to speci... |
tree | commitdiff |
2019-03-21 |
Ben Soares | JAL-3130 Replaced deprecated Class.newInstance() with... |
tree | commitdiff |
2019-03-20 |
Ben Soares | JAL-3130 Lots of deprecation fixes. See utils/deprecat... |
tree | commitdiff |
2019-03-19 |
Ben Soares | JAL-3130 Merge of JAL-3130_Java_11_investigations-Ben... |
tree | commitdiff |
2019-03-11 |
gmungoc | Merge branch 'feature/JAL-3127_seqidChainshading' into... |
tree | commitdiff |
2019-03-01 |
gmungoc | Merge branch 'bug/JAL-2791exportFilteredFeature' into... |
tree | commitdiff |
2019-03-01 |
gmungoc | Merge branch 'feature/JAL-3093wrappedModeTooltips'... |
tree | commitdiff |
2019-02-28 |
gmungoc | Merge branch 'feature/JAL-3169cancelOverwrite' into... |
tree | commitdiff |
2019-02-28 |
gmungoc | Merge remote-tracking branch 'origin/feature/JAL-3141_b... |
tree | commitdiff |
2019-02-28 |
Jim Procter | Merge branch 'feature/JAL-3141_backupfiles_for211'... merge/develop_feature/JAL-3141_backupfiles_for211 |
tree | commitdiff |
2019-02-22 |
gmungoc | JAL-2738 don't set AF as feature score |
tree | commitdiff |
2019-02-22 |
Ben Soares | JAL-3141 improved message for asking whether to delete... |
tree | commitdiff |
2019-02-21 |
Ben Soares | JAL-3141 Sensible refactoring for confirming deleting... |
tree | commitdiff |
2019-02-17 |
Ben Soares | JAL-3141 User warning when deleting old backup files... |
tree | commitdiff |
2019-02-15 |
Ben Soares | JAL-3141 re-order deletion of old files and check lastM... |
tree | commitdiff |
2019-02-14 |
Ben Soares | JAL-3141 Added warning/confirmation when suffixReverse... |
tree | commitdiff |
2019-02-01 |
Ben Soares | JAL-3141 Slight efficiency gain in detecting backupfile... |
tree | commitdiff |
2019-01-30 |
Ben Soares | JAL-3141 Enabled the 'Include backpup files' checkbox... |
tree | commitdiff |
2019-01-29 |
Ben Soares | JAL-3141 Found a good fix for updating the FileChooser... |
tree | commitdiff |
2019-01-29 |
Ben Soares | JAL-3141 Found a (not ideal) fix for updating the FileC... |
tree | commitdiff |
2019-01-28 |
Ben Soares | JAL-3141 improvement on BackupFilenameParts filename... |
tree | commitdiff |
2019-01-25 |
Ben Soares | JAL-3141. This adds quite a lot of code to allow an... |
tree | commitdiff |
2019-01-25 |
gmungoc | JAL-3187 don't compute variant features on peptide... |
tree | commitdiff |
2019-01-24 |
Ben Soares | JAL-3141 New layout and wording of Backups Preferences... |
tree | commitdiff |
2019-01-24 |
Ben Soares | JAL-3141 Reformatted code in eclipse |
tree | commitdiff |
2019-01-23 |
Ben Soares | JAL-3141 Added Presets options in the Backups Preferenc... |
tree | commitdiff |
2019-01-22 |
Ben Soares | JAL-3141 Fixed what happens when suffix template has... |
tree | commitdiff |
2019-01-20 |
Ben Soares | JAL-3141 removing diagnostic output |
tree | commitdiff |
2019-01-20 |
Ben Soares | JAL-3141 Changed suffix position to after the extension... |
tree | commitdiff |
2019-01-18 |
Jim Procter | Merge branch 'feature/JAL-3063jaxbNoCastor' into featur... |
tree | commitdiff |
2019-01-14 |
Ben Soares | JAL-3141 Made more constants |
tree | commitdiff |
2019-01-09 |
Ben Soares | JAL-3141 removed redundant method to tests |
tree | commitdiff |
2019-01-09 |
Ben Soares | JAL-3141 forgot to add this file after extracting the... |
tree | commitdiff |
2019-01-09 |
Ben Soares | JAL-3141 Made one more suggested change from code review |
tree | commitdiff |
2019-01-08 |
Ben Soares | JAL-3141 Made some more suggested changes from code... |
tree | commitdiff |
2019-01-08 |
Ben Soares | JAL-3141 Made some suggested changes from code review |
tree | commitdiff |
2018-12-19 |
gmungoc | JAL-3178 include non-positional features in their group... bug/JAL-2791exportFilteredFeature |
tree | commitdiff |
2018-12-13 |
Ben Soares | JAL-3130 Attempting to fix 8 tests that pass on a Mac... |
tree | commitdiff |
2018-12-10 |
gmungoc | JAL-1421 added type to List and Vector feature/JAL-3169cancelOverwrite |
tree | commitdiff |
2018-12-10 |
gmungoc | JAL-3169 leave file browser open on Cancel in overwrite... |
tree | commitdiff |
2018-12-06 |
Ben Soares | JAL-3130 incorporating feature/JAL-3063jaxbNoCastor... |
tree | commitdiff |
2018-12-03 |
gmungoc | JAL-3063 Castor removed from codebase |
tree | commitdiff |
2018-11-02 |
Ben Soares | JAL-3141 Tests now available and working, bringing... |
tree | commitdiff |
2018-10-31 |
Ben Soares | JAL-3141 Preferences 'Backups' tab now working. Doesn... |
tree | commitdiff |
2018-10-25 |
Ben Soares | JAL-3141 Ostensibly all backups working for alignment... |
tree | commitdiff |
next |