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JAL-1705 parse 'description' from GFF as sequence description
[jalview.git]
/
src
/
jalview
/
io
/
2014-12-05
Charles Ofoegbu
JAL-1605 merge commit
tree
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commitdiff
2014-12-05
Charles Ofoegbu
Change the Html export to utilize svg
tree
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commitdiff
2014-12-01
Jim Procter
JAL-1199 JAL-1569 incremental patch allow non-standard...
tree
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commitdiff
2014-11-26
Jim Procter
Merge branch 'JAL-674_fixannotlabels' into develop
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commitdiff
2014-11-26
Jim Procter
JAL-674 make RNAML-extracted secondary structure lines...
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commitdiff
2014-11-23
Jim Procter
Merge branch 'JAL-1569_wuss_vienna_broke' into develop
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commitdiff
2014-11-23
Jim Procter
Merge branch 'JAL-1569_wuss_vienna_broke' into Release_...
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commitdiff
2014-11-23
Jim Procter
JAL-1569 consistent handling of sequence and alignment...
tree
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commitdiff
2014-11-23
Jim Procter
JAL-1569 formatting
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commitdiff
2014-11-23
Jim Procter
JAL-1569 preserve input ordering for stockholm files...
tree
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commitdiff
2014-11-21
Jim Procter
JAL-674 add RNA sequence associated annotation to align...
tree
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commitdiff
2014-11-21
Jim Procter
JAL-1569 formatting
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commitdiff
2014-11-21
Jim Procter
JAL-1140 sensible name for seuqences in RNAML files...
tree
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commitdiff
2014-11-18
Jim Procter
Merge branch 'JAL-1587_promotedisorder' into develop
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commitdiff
2014-11-18
Jim Procter
JAL-674 make temperature factor, local secondary struct...
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commitdiff
2014-11-17
Charles Ofoegbu
comand line support for svg generation
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commitdiff
2014-11-14
Charles Ofoegbu
House keeping
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commitdiff
2014-11-14
Jim Procter
Merge branch 'develop' into JAL-1483_featureBasedTreeCalc
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commitdiff
2014-11-12
Charles Ofoegbu
Excluded HtmlFile.java dependencies from AppletFomatAdapter
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commitdiff
2014-11-12
Charles Ofoegbu
Modified biojs exporter/importer to preserve SequenceFe...
tree
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commitdiff
2014-11-07
Charles Ofoegbu
Modified BioJsHTMLOutput.java to clean up and close...
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commitdiff
2014-11-07
Charles Ofoegbu
Modified BioJsHTMLOutput.java to use class loader while...
tree
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commitdiff
2014-11-06
Charles Ofoegbu
Changes from JAL-1541 patch
tree
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commitdiff
2014-11-06
Charles Ofoegbu
Updated BioJs Html to be capable of launching jalivew
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commitdiff
2014-11-06
Jim Procter
Merge branch 'features/JAL-1541_BioJsMSAViewer-export...
tree
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commitdiff
2014-10-31
Charles Ofoegbu
JAL-1541 upadated BioJs emmitter to store alignment...
tree
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commitdiff
2014-10-30
Jim Procter
JAL-674 register PDB IDs when ever they are resolved...
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commitdiff
2014-10-30
Jim Procter
JAL-1551 format and tidy
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commitdiff
2014-10-30
Charles Ofoegbu
JAL-1541 BioJs MSA Viewer export option implementation
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commitdiff
2014-10-15
Jim Procter
JAL-674 always try to extract secondary structure when...
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commitdiff
2014-10-15
Jim Procter
JAL-674 make transferAnnotation method static
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commitdiff
2014-10-10
Jim Procter
JAL-674 change jalview.io.AlignFile to allow parsing...
tree
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commitdiff
2014-10-06
Jim Procter
Merge branch 'Release_2_8_2_Branch' into JAL-429_phylip...
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commitdiff
2014-10-03
Charles Ofoegbu
Integration of David Corsars Phylip File support
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commitdiff
2014-09-26
darolmar
JAL-1355
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commitdiff
2014-09-23
darolmar
JAL-1355
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commitdiff
2014-09-12
j.procter@dundee...
JAL-1486 JAL-1543 pushed alignment viewport->view-...
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commitdiff
2014-09-12
j.procter@dundee...
JAL-1199 add stockholm output to list of AppletFormatAd...
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commitdiff
2014-08-08
j.procter@dundee...
JAL-1482 feature renderer and manipulation code refacto...
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commitdiff
2014-06-06
Jim Procter
JAL-1517 source formatting
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commitdiff
2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
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commitdiff
2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
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commitdiff
2014-06-05
Jim Procter
Merge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch
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commitdiff
2014-06-03
Jim Procter
JAL-690 JAL-1503 update file types/extensions in Jalvie...
tree
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commitdiff
2014-06-03
Jim Procter
JAL-690 add .jvp as default jalview project filetype
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commitdiff
2014-05-22
Jim Procter
JAL-1503 update version in GPL header
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commitdiff
2014-04-23
Jim Procter
Merge branch 'JAL-1486_hiddenStartEnd' into develop
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commitdiff
2014-04-23
Jim Procter
Merge branch 'JAL-1486_hiddenStartEnd' into Release_2_8...
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commitdiff
2014-04-23
Jim Procter
Merge branch 'JAL-1486_hiddenStartEnd' into Release_2_8...
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commitdiff
2014-04-23
Jim Procter
JAL-1486 todo for 2.8.2 release
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commitdiff
2014-04-23
Jim Procter
Merge branch 'jims_marckhacks' into develop
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commitdiff
2014-04-21
Jim Procter
fix for JAL-1438
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commitdiff
2014-04-21
Jim Procter
Merge branch 'jims_marckhacks' into develop
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commitdiff
2014-04-21
Jim Procter
fix for JAL-1478
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commitdiff
2014-02-26
Jim Procter
Merge branch 'JAL-686' into develop
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commitdiff
2014-02-26
Jim Procter
JAL-1457 refactoring to explore why '-' appear in annot...
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commitdiff
2014-02-26
Jim Procter
fix for JAL-686 - don't trim spaces before creating...
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commitdiff
2014-02-20
Jim Procter
Merge branch 'JAL-1447' into develop
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commitdiff
2014-02-20
Jim Procter
Merge branch 'JAL-1447' into Release_2_8_1_Branch
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commitdiff
2014-02-20
Jim Procter
JAL-1447 patch to correctly recognise FASTA files conta...
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commitdiff
2014-02-18
Jim Procter
Merge branch 'JAL-1445' into develop
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commitdiff
2014-02-03
Jim Procter
Merge branch 'Release_2_8_1_Branch_i18n' into try_r20b1...
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commitdiff
2014-02-03
Jim Procter
Merge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge
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commitdiff
2014-01-29
Jim Procter
JAL-1432 updated copyright notices
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commitdiff
2014-01-27
Jim Procter
JAL-1430 mfa added as a known extension for FASTA files
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commitdiff
2014-01-13
Jim Procter
Merge branch 'Release_2_8_1_Branch' into Release_2_8_1_...
tree
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commitdiff
2013-12-25
darolmar
JAL-1355 (basic i18n support)
tree
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commitdiff
2013-11-07
Jim Procter
Merge branch 'JAL-1286' into develop
tree
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commitdiff
2013-11-07
Jim Procter
Merge branch 'JAL-1286' into Release_2_8_1_Branch
tree
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commitdiff
2013-11-07
Jim Procter
JAL-1286 check if local file ends with .gz and opens...
tree
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commitdiff
2013-10-15
Jim Procter
JAL-1159 Merging 2.8.1 patches and Anne Menards work...
tree
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commitdiff
2013-10-14
Jim Procter
Merge branch 'develop' into dev_from_2_8_1
tree
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commitdiff
2013-08-29
darolmar
i18n
tree
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commitdiff
2013-06-21
Jim Procter
Merge branch 'develop' into develop_m2_8_1_2
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commitdiff
2013-06-21
Jim Procter
Merge branch 'JAL-1294_iupredexportimport' into develop
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commitdiff
2013-06-21
Jim Procter
JAL-1325 JAL-1294 resolve SEQUENCE_REF and GROUP_REF...
tree
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commitdiff
2013-06-21
Jim Procter
JAL-1294 JAL-1325 store graphline for individual annota...
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commitdiff
2013-06-14
Jim Procter
Merge branch 'develop' into develop_m2_8_1_2
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commitdiff
2013-06-14
Jim Procter
Merge branch 'JAL-1316' into develop
tree
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commitdiff
2013-06-14
Jim Procter
JAL-1316 compact '' to '
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commitdiff
2013-06-14
Jim Procter
JAL-1316 recognise and extract quoted region as nodename
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commitdiff
2013-06-07
Jim Procter
Merge branch 'develop' into develop_m2_8_1_2
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commitdiff
2013-06-07
Jim Procter
Merge branch 'JAL-1161_optimisingAnnotationPanel' into...
tree
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commitdiff
2013-05-24
Jim Procter
Merge branch 'menard' into develop_m2_8_1_2
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commitdiff
2013-05-24
Jim Procter
patch for JAL-1300 fixes JAL-1294: read and write COMBI...
tree
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commitdiff
2013-05-24
Jim Procter
JAL-381 Desktop.addInternalFrame cannot be called in...
tree
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commitdiff
2013-05-24
Jim Procter
JAL-1299 fix: ensure a new graphGroup is created if...
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commitdiff
2013-05-24
Jim Procter
fix for JAL-1297: COMBINE output now follows specificat...
tree
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commitdiff
2013-05-24
Jim Procter
JAL-1070 - [ not a real patch ] - include offending...
tree
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commitdiff
2013-05-13
Jim Procter
JAL-1286 URL stream reader tries to use a GZIPInputStre...
tree
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commitdiff
2013-04-12
Jim Procter
JAL-1286 URL stream reader tries to use a GZIPInputStre...
tree
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commitdiff
2013-02-14
Jim Procter
Merge branch 'JAL-1199-Stk_writing' into rnaml_test
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commitdiff
2013-02-14
Jim Procter
JAL-1140 reinstate the simpler version of parsing code...
tree
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commitdiff
2013-02-13
Jim Procter
Merge branch 'jims_annotate3d_update' into menard_final...
tree
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commitdiff
2013-02-13
jprocter
fix merge conflicts for finess on JAL-1140 (introduced...
tree
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commitdiff
2013-02-13
jprocter
JAL-1213 JAL-674 - import a PDB file using Jmol data...
tree
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commitdiff
2013-02-11
jprocter
patch for 'This parser does not support specification...
tree
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commitdiff
2013-02-06
jprocter
JAL-1265 basic support for parsing database accessions...
tree
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commitdiff
2013-02-06
jprocter
JAL-1199 refactored stockholm test code from main class...
tree
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commitdiff
2013-02-05
jprocter
formatting
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commitdiff
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