2017-10-24 |
kjvdheide | Merge branch 'develop' of https://source.jalview.org... |
tree | commitdiff |
2017-10-12 |
Jim Procter | JAL-2773 add new flag to paintAlignment(updateOverview... features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview |
tree | commitdiff |
2017-09-27 |
kjvanderheide | proof of concept for passing tree data to archaeopteryx |
tree | commitdiff |
2017-08-21 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList |
tree | commitdiff |
2017-08-16 |
Jim Procter | JAL-2418 add GPL to main sources |
tree | commitdiff |
2017-08-16 |
Jim Procter | JAL-2418 source formatting |
tree | commitdiff |
2017-06-27 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-06-14 |
gmungoc | JAL-2598 Sequence.getSequence return a copy of the... |
tree | commitdiff |
2017-06-07 |
kiramt | JAL-2591 Hidden columns regions can be output to string... |
tree | commitdiff |
2017-06-07 |
kiramt | JAL-2591 simplifying hidden columns usage |
tree | commitdiff |
2017-06-02 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-06-01 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-06-01 |
Jim Procter | Merge branch 'features/JAL-1648_cache_user_inputs'... |
tree | commitdiff |
2017-05-31 |
tcofoegbu | Fixed failing tests |
tree | commitdiff |
2017-05-30 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-05-29 |
Jim Procter | Merge branch 'features/JAL-2465_No-mapping_Jmol-structu... |
tree | commitdiff |
2017-05-29 |
Jim Procter | JAL-2533 update javadoc features/JAL-2465_No-mapping_Jmol-structures-loaded-via-url |
tree | commitdiff |
2017-05-26 |
tcofoegbu | JAL-2465 Improvement to re-instate storing recently... |
tree | commitdiff |
2017-05-26 |
tcofoegbu | JAL-2465 fix to prevent files loaded from the system... |
tree | commitdiff |
2017-05-25 |
gmungoc | JAL-2557 removal of Sequence.sequenceFeatures |
tree | commitdiff |
2017-05-25 |
Jim Procter | Merge branch 'develop' into features/JAL-1648_cache_use... |
tree | commitdiff |
2017-05-25 |
gmungoc | JAL-2050 make SequenceFeature.score final, adjust const... |
tree | commitdiff |
2017-05-25 |
gmungoc | JAL-2490 test coverage of empty and null feature group... |
tree | commitdiff |
2017-05-23 |
gmungoc | JAL-2490 find features for export as GFF, JAL-2548... |
tree | commitdiff |
2017-05-23 |
gmungoc | JAL-2490 tidy code and tests for feature export in... |
tree | commitdiff |
2017-05-23 |
gmungoc | JAL-2490 improved lookup of features for Export Feature... |
tree | commitdiff |
2017-05-22 |
gmungoc | JAL-2505 use setter not direct access to sf.description |
tree | commitdiff |
2017-05-22 |
gmungoc | JAL-2543 identify as JSON before HTML |
tree | commitdiff |
2017-05-22 |
gmungoc | JAL-2546 JAL-2490 efficient lookup of features, correct... |
tree | commitdiff |
2017-05-19 |
gmungoc | JAL-2490 refactored test for 'hasFeatures' |
tree | commitdiff |
2017-05-16 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-05-16 |
gmungoc | JAL-2505 refactor to set type and group in SequenceFeat... |
tree | commitdiff |
2017-05-15 |
Jim Procter | Merge branch 'bug/JAL-2507_rnasecstrstockholm' into... |
tree | commitdiff |
2017-05-15 |
Jim Procter | JAL-2507 capitalisation for annotation lines generated... |
tree | commitdiff |
2017-05-15 |
Jim Procter | JAL-2507 case insensitive recognition of annotation... |
tree | commitdiff |
2017-05-15 |
Jim Procter | JAL-2535 quick hack to implement posterior probabilitie... |
tree | commitdiff |
2017-05-15 |
tcofoegbu | JAL-2520 improvement to use URL leaf name for creating... |
tree | commitdiff |
2017-05-15 |
tcofoegbu | JAL-2533 improvement to prune off file extension when... |
tree | commitdiff |
2017-05-15 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-05-12 |
Jim Procter | Merge branch 'features/JAL-2388OverviewWindow' into... |
tree | commitdiff |
2017-05-11 |
Jim Procter | JAL-2509 JAL-2507 allow whitespace in GS annotation... |
tree | commitdiff |
2017-05-09 |
Jim Procter | JAL-2509 extend set of brackets recognised by stockholm... |
tree | commitdiff |
2017-05-09 |
tcofoegbu | JAL-2520 improvement to download and update structure... |
tree | commitdiff |
2017-05-09 |
Jim Procter | JAL-2507 unpaired RNA marked as ‘ ‘ in Stockholm SS... |
tree | commitdiff |
2017-05-09 |
Jim Procter | JAL-2507 output secondary structure regardless of prese... |
tree | commitdiff |
2017-05-09 |
gmungoc | JAL-2505 use constructors to set (what will be) final... |
tree | commitdiff |
2017-05-08 |
gmungoc | JAL-2505 set type,desc,begin,end,group,score in Sequenc... |
tree | commitdiff |
2017-05-08 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-05-05 |
kiramt | Merge remote-tracking branch |
tree | commitdiff |
2017-05-05 |
tcofoegbu | JAL-2484 adjusted default cache settings panel's left... |
tree | commitdiff |
2017-05-05 |
kiramt | Merge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges |
tree | commitdiff |
2017-05-05 |
kiramt | Merge remote-tracking branch 'origin/develop' into |
tree | commitdiff |
2017-05-04 |
tcofoegbu | JAL-1648 improvements: enter key closes the popup and... |
tree | commitdiff |
2017-05-04 |
tcofoegbu | JAL-1648 resolved CR-JAL-41 review issues |
tree | commitdiff |
2017-05-04 |
Jim Procter | fix for JAL-2509 - don’t replace all bracket types... |
tree | commitdiff |
2017-05-04 |
Jim Procter | fix for JAL-2507 - resolve stockholm per residue annota... |
tree | commitdiff |
2017-05-02 |
gmungoc | JAL-2499 JAL-2403 push 'configure for view' inside... |
tree | commitdiff |
2017-05-02 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices |
tree | commitdiff |
2017-05-01 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-05-01 |
gmungoc | JAL-2489 JAL-2371 reinstate calls to |
tree | commitdiff |
2017-04-28 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices |
tree | commitdiff |
2017-04-27 |
gmungoc | JAL-2492 use SequenceFeatures.getNonPositionalFeatures() |
tree | commitdiff |
2017-04-26 |
kiramt | Merge remote-tracking branch 'origin/develop' into... |
tree | commitdiff |
2017-04-26 |
kiramt | Merge remote-tracking branch 'origin/develop' into... |
tree | commitdiff |
2017-04-26 |
gmungoc | JAL-2490 findFeaturesAtRes with performant feature... |
tree | commitdiff |
2017-04-25 |
tcofoegbu | JAL-2489 bug fix |
tree | commitdiff |
2017-04-25 |
kiramt | JAL-2388 Working hidden regions hide/show in desktop |
tree | commitdiff |
2017-04-24 |
tcofoegbu | JAL-1648 House keeping |
tree | commitdiff |
2017-04-24 |
kiramt | JAL-2388 Finished split of hidden columns and selected... |
tree | commitdiff |
2017-04-24 |
tcofoegbu | JAL-1648 added unit test for AppCache |
tree | commitdiff |
2017-04-24 |
kiramt | JAL-2388 Hidden cols separated from column selection... |
tree | commitdiff |
2017-04-20 |
tcofoegbu | JAL-2484 minor house-keeping |
tree | commitdiff |
2017-04-20 |
tcofoegbu | JAL-2484 minor house-keeping and code docs |
tree | commitdiff |
2017-04-20 |
tcofoegbu | JAL-2484 added improvement to enable clearing cache... |
tree | commitdiff |
2017-04-20 |
tcofoegbu | JAL-1648 refactored and improved caching architecture... |
tree | commitdiff |
2017-04-11 |
tcofoegbu | JAL-1648 Fix review issue - remove usage of String... |
tree | commitdiff |
2017-04-03 |
tcofoegbu | Merge branch 'develop' of https://source.jalview.org... |
tree | commitdiff |
2017-04-03 |
tcofoegbu | JAL-1648 Added improvement to persist cache items to... |
tree | commitdiff |
2017-03-28 |
gmungoc | JAL-2416 more test coverage of matrix parser |
tree | commitdiff |
2017-03-27 |
gmungoc | JAL-2416 parse score matrices in either NCBI or AAindex... |
tree | commitdiff |
2017-03-27 |
gmungoc | JAL-2416 class Javadoc updates prior to parsing changes |
tree | commitdiff |
2017-03-24 |
gmungoc | JAL-2428 simplify TreeModel constructors, add getOrigin... |
tree | commitdiff |
2017-03-24 |
gmungoc | JAL-1632 TreeChooser renamed CalculationChooser, text... |
tree | commitdiff |
2017-03-23 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices |
tree | commitdiff |
2017-03-13 |
gmungoc | JAL-2438 FeatureColourFinder refactored from FeatureRen... |
tree | commitdiff |
2017-03-06 |
gmungoc | JAL-2428 separate TreeModel from TreeBuilder/NJTree... |
tree | commitdiff |
2017-03-01 |
gmungoc | Merge branch 'features/JAL-2295setChimeraAttributes... |
tree | commitdiff |
2017-02-27 |
gmungoc | JAL-1632 similarity options on TreeChooser panel affect... |
tree | commitdiff |
2017-02-21 |
gmungoc | JAL-2416 support roundtrip print/parse of ScoreMatrix |
tree | commitdiff |
2017-02-17 |
gmungoc | JAL-2416 allow space in score matrix name |
tree | commitdiff |
2017-02-17 |
gmungoc | JAL-2403 constants for "NJ", "AV" |
tree | commitdiff |
2017-02-14 |
gmungoc | Parsing moved to (new) ScoreMatrixFile, drag and drop... |
tree | commitdiff |
2017-01-26 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicabilit... |
tree | commitdiff |
2017-01-26 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSche... |
tree | commitdiff |
2017-01-26 |
gmungoc | JAL-2344 test fix and code tidy for review comments |
tree | commitdiff |
2017-01-25 |
gmungoc | JAL-2344 push Cache.getProperty("LAST_DIRECTORY") insid... |
tree | commitdiff |
2017-01-17 |
gmungoc | Merge branch 'develop' into features/JAL-2295setChimera... |
tree | commitdiff |
2017-01-17 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicabilit... |
tree | commitdiff |
2017-01-17 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSche... |
tree | commitdiff |
2017-01-12 |
gmungoc | JAL-2344 now flagging formats as 'identifiable' instead... |
tree | commitdiff |
next |