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Fixed some broken tests
[jalview.git] / src / jalview / io /
2015-05-13 tcofoegbuFixed some broken tests tree | commitdiff
2015-05-12 tcofoegbuJAL_793 implemented embeding source data in exported... tree | commitdiff
2015-05-12 tcofoegbuMerge branch 'features/JAL-1641_JSON_' into develop tree | commitdiff
2015-05-12 tcofoegbuJAL_1641 added unit test and minor house keeping tree | commitdiff
2015-05-11 tcofoegbuMerge branch 'features/JAL-1641_JSON_' into develop tree | commitdiff
2015-05-11 tcofoegbuJAL-1641 cherry-picked changes into develop compatible... tree | commitdiff
2015-05-09 unknownJAL-1601 bugfix on previous commit tree | commitdiff
2015-05-09 unknownJAL-1601 patch burial display for prediction loaded... tree | commitdiff
2015-05-07 Jim ProcterJAL-1551 formatting tree | commitdiff
2015-05-07 Jim ProcterJAL-1601 migrated the JABAWS 2.1 jpred burial represent... tree | commitdiff
2015-03-27 tcofoegbumerge commit tree | commitdiff
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch tree | commitdiff
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... tree | commitdiff
2015-03-06 Jim Procterreassign features already created/documented for 2... tree | commitdiff
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e... tree | commitdiff
2015-02-19 gmungocJAL-1665 refactored Sequence.getSequenceFeatures features/sequenceFeatureRefactor tree | commitdiff
2015-02-05 Charles Ofoegbumerge commit tree | commitdiff
2015-02-04 Charles OfoegbuJAL-1643 modified jalviewFileChooser to retain default... tree | commitdiff
2015-02-04 Charles OfoegbuJAL-1643 Modified JalviewFileChooser to have a more... tree | commitdiff
2015-01-26 gmungocMerge branch 'features/JAL-1588saveChimeraSession'... tree | commitdiff
2015-01-23 Jim ProcterJAL-1551 formatting tree | commitdiff
2015-01-23 Jim ProcterJAL-1286 don't print an exception if a non-gzip stream... tree | commitdiff
2015-01-23 Jim ProcterJAL-1628 tweak signature of core annotation printer... tree | commitdiff
2015-01-23 Jim ProcterJAL-1628 drop getShowAnnotation accessor in favour... tree | commitdiff
2015-01-21 Jim ProcterMerge branch 'develop' into feature_29/JAL-1372_referen... tree | commitdiff
2015-01-18 Jim ProcterJAL-1628 employ new AnnotationFile reader method to... tree | commitdiff
2015-01-18 Jim ProcterJAL-1628 new entry point for reading annotation files... tree | commitdiff
2015-01-18 Jim ProcterJAL-1628 formatting and javadoc tree | commitdiff
2015-01-14 gmungocJAL-1629 .jar option removed from Alignment File Save... tree | commitdiff
2015-01-07 Jim ProcterMerge branch 'develop' into JAL-1483_29dev tree | commitdiff
2015-01-07 gmungocJAL-1588 refactoring to StructureViewerBase and related tree | commitdiff
2014-12-22 Charles OfoegbuPatch to synchronize title svg and allignment svg scrolling tree | commitdiff
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7 tree | commitdiff
2014-12-15 Charles Ofoegbuupdate HtmlSvgOutput to ignore browser invocation when... tree | commitdiff
2014-12-15 Charles Ofoegbuupdate HtmlSvgOutput to ignore browser invocation when... features/JAL-1605_html-svg-export tree | commitdiff
2014-12-15 Jim ProcterJAL-1620 version bump and release notes tree | commitdiff
2014-12-08 Charles Ofoegbumerge commit tree | commitdiff
2014-12-05 Charles OfoegbuMerge branch 'features/JAL-1605_html-svg-export' into... tree | commitdiff
2014-12-05 Charles OfoegbuJAL-1605 added command line support for html export... tree | commitdiff
2014-12-05 Charles Ofoegbumodified html css tree | commitdiff
2014-12-05 Charles OfoegbuJAL-1605 merge commit tree | commitdiff
2014-12-05 Charles OfoegbuChange the Html export to utilize svg tree | commitdiff
2014-12-01 Jim ProcterJAL-1199 JAL-1569 incremental patch allow non-standard... tree | commitdiff
2014-11-26 Jim ProcterMerge branch 'JAL-674_fixannotlabels' into develop tree | commitdiff
2014-11-26 Jim ProcterJAL-674 make RNAML-extracted secondary structure lines... tree | commitdiff
2014-11-23 Jim ProcterMerge branch 'JAL-1569_wuss_vienna_broke' into develop tree | commitdiff
2014-11-23 Jim ProcterMerge branch 'JAL-1569_wuss_vienna_broke' into Release_... tree | commitdiff
2014-11-23 Jim ProcterJAL-1569 consistent handling of sequence and alignment... tree | commitdiff
2014-11-23 Jim ProcterJAL-1569 formatting tree | commitdiff
2014-11-23 Jim ProcterJAL-1569 preserve input ordering for stockholm files... tree | commitdiff
2014-11-21 Jim ProcterJAL-674 add RNA sequence associated annotation to align... tree | commitdiff
2014-11-21 Jim ProcterJAL-1569 formatting tree | commitdiff
2014-11-21 Jim ProcterJAL-1140 sensible name for seuqences in RNAML files... tree | commitdiff
2014-11-18 Jim ProcterMerge branch 'JAL-1587_promotedisorder' into develop tree | commitdiff
2014-11-18 Jim ProcterJAL-674 make temperature factor, local secondary struct... tree | commitdiff
2014-11-17 Charles Ofoegbucomand line support for svg generation tree | commitdiff
2014-11-14 Charles OfoegbuHouse keeping tree | commitdiff
2014-11-14 Jim ProcterMerge branch 'develop' into JAL-1483_featureBasedTreeCalc tree | commitdiff
2014-11-12 Charles OfoegbuExcluded HtmlFile.java dependencies from AppletFomatAdapter tree | commitdiff
2014-11-12 Charles OfoegbuModified biojs exporter/importer to preserve SequenceFe... tree | commitdiff
2014-11-07 Charles OfoegbuModified BioJsHTMLOutput.java to clean up and close... tree | commitdiff
2014-11-07 Charles OfoegbuModified BioJsHTMLOutput.java to use class loader while... tree | commitdiff
2014-11-06 Charles OfoegbuChanges from JAL-1541 patch tree | commitdiff
2014-11-06 Charles OfoegbuUpdated BioJs Html to be capable of launching jalivew tree | commitdiff
2014-11-06 Jim ProcterMerge branch 'features/JAL-1541_BioJsMSAViewer-export... tree | commitdiff
2014-10-31 Charles OfoegbuJAL-1541 upadated BioJs emmitter to store alignment... tree | commitdiff
2014-10-30 Jim ProcterJAL-674 register PDB IDs when ever they are resolved... tree | commitdiff
2014-10-30 Jim ProcterJAL-1551 format and tidy tree | commitdiff
2014-10-30 Charles OfoegbuJAL-1541 BioJs MSA Viewer export option implementation tree | commitdiff
2014-10-15 Jim ProcterJAL-674 always try to extract secondary structure when... tree | commitdiff
2014-10-15 Jim ProcterJAL-674 make transferAnnotation method static tree | commitdiff
2014-10-10 Jim ProcterJAL-674 change jalview.io.AlignFile to allow parsing... tree | commitdiff
2014-10-06 Jim ProcterMerge branch 'Release_2_8_2_Branch' into JAL-429_phylip... tree | commitdiff
2014-10-03 Charles OfoegbuIntegration of David Corsars Phylip File support tree | commitdiff
2014-09-26 darolmarJAL-1355 tree | commitdiff
2014-09-23 darolmarJAL-1355 tree | commitdiff
2014-09-12 j.procter@dundee... JAL-1486 JAL-1543 pushed alignment viewport->view-... tree | commitdiff
2014-09-12 j.procter@dundee... JAL-1199 add stockholm output to list of AppletFormatAd... tree | commitdiff
2014-08-08 j.procter@dundee... JAL-1482 feature renderer and manipulation code refacto... tree | commitdiff
2014-06-06 Jim ProcterJAL-1517 source formatting tree | commitdiff
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 tree | commitdiff
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2 tree | commitdiff
2014-06-05 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch tree | commitdiff
2014-06-03 Jim ProcterJAL-690 JAL-1503 update file types/extensions in Jalvie... tree | commitdiff
2014-06-03 Jim ProcterJAL-690 add .jvp as default jalview project filetype tree | commitdiff
2014-05-22 Jim ProcterJAL-1503 update version in GPL header tree | commitdiff
2014-04-23 Jim ProcterMerge branch 'JAL-1486_hiddenStartEnd' into develop tree | commitdiff
2014-04-23 Jim ProcterMerge branch 'JAL-1486_hiddenStartEnd' into Release_2_8... tree | commitdiff
2014-04-23 Jim ProcterMerge branch 'JAL-1486_hiddenStartEnd' into Release_2_8... tree | commitdiff
2014-04-23 Jim ProcterJAL-1486 todo for 2.8.2 release tree | commitdiff
2014-04-23 Jim ProcterMerge branch 'jims_marckhacks' into develop tree | commitdiff
2014-04-21 Jim Procterfix for JAL-1438 tree | commitdiff
2014-04-21 Jim ProcterMerge branch 'jims_marckhacks' into develop tree | commitdiff
2014-04-21 Jim Procterfix for JAL-1478 tree | commitdiff
2014-02-26 Jim ProcterMerge branch 'JAL-686' into develop tree | commitdiff
2014-02-26 Jim ProcterJAL-1457 refactoring to explore why '-' appear in annot... tree | commitdiff
2014-02-26 Jim Procterfix for JAL-686 - don't trim spaces before creating... tree | commitdiff
2014-02-20 Jim ProcterMerge branch 'JAL-1447' into develop tree | commitdiff
2014-02-20 Jim ProcterMerge branch 'JAL-1447' into Release_2_8_1_Branch tree | commitdiff
2014-02-20 Jim ProcterJAL-1447 patch to correctly recognise FASTA files conta... tree | commitdiff
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