JAL-3937 enable AIA download of intermediate certificates when needed
[jalview.git] / src / jalview / jbgui / GAlignFrame.java
2019-07-16 gmungocJAL-3210 Merge branch 'develop' into trialMerge
2019-04-15 Ben SoaresJAL-3130 Helper classes to take Class Exceptions when...
2019-04-03 hansonrj2sNative clean-up. Fixes problem with second try of...
2019-03-31 hansonradds AlignFrame name jalview-alignment;
2019-03-27 hansonrallows web-page embedding
2019-03-20 Ben SoaresJAL-3130 Lots of deprecation fixes. See utils/deprecat...
2019-03-13 gmungocMerge branch 'develop' into trialMerge
2019-03-07 gmungocMerge branch 'feature/JAL-3180colourAnnotationMenu...
2019-03-05 gmungocMerge remote-tracking branch 'origin/features/JAL-2620a...
2019-02-05 gmungocJAL-3048 JS-compatible confirm dialog on delete all
2019-01-30 gmungocJAL-3056 no export as BioJS in JalviewJS
2019-01-26 hansonrJalview.isJS() --> Platform.isJS(), DBRefEntry[] -...
2019-01-21 hansonradded Platform settings separating mouse use of win...
2019-01-21 hansonradded Platform settings separating mouse use of win...
2019-01-21 hansonrisAMac() -> isAMacAndNotJS(), isWindows() -> isWindowsA...
2019-01-04 gmungocJAL-3180 fix By Annotation selection state in colour...
2018-10-29 gmungocJAL-3144 SequenceFetcher without JDatabaseTree
2018-10-04 gmungocJAL-3132 set status message when over sequence id or...
2018-09-11 gmungocJAL-3056 offer New / Expand / Gather View in JalviewJS
2018-08-20 gmungocJAL-3032 Feature Settings menu item always enabled...
2018-08-17 gmungocJAL-3048 remove obsolete way of handling dialogs in...
2018-07-25 hansonrmerged
2018-07-23 gmungocJAL-3056 suppress menu options, and repoint Help, for...
2018-07-20 gmungocJAL-3048 revised AlignExportSettings dialog with respon...
2018-07-19 gmungocJAL-3048 revert saveAs action so it works in Javascript too
2018-07-06 hansonrJAL-3026 all tabbed panes use JavaScript option
2018-07-02 hansonrJAL-3026 Java+JavaScript fix for GD#95
2018-07-02 hansonrJAL-3026 Java+JavaScript fix for GD#95
2018-06-28 Jim ProcterJAL-3048 todo and JAL-3026 disable VCF support
2018-03-16 gmungocJAL-2620 alternative genetic code translation tables
2017-10-03 gmungocJAL-2738 copy to spikes/mungo
2017-09-21 gmungocJAL-2738 PoC of Load VCF file on to gene sequence
2017-08-16 Jim ProcterJAL-2418 source formatting
2017-06-09 gmungocJAL-2446 merged to spike branch
2017-05-05 gmungocMerge branch 'develop' into features/JAL-2435splitScree...
2017-05-02 gmungocJAL-2499 JAL-2403 push 'configure for view' inside...
2017-04-07 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-03-31 gmungocJAL-1608 unused method removed
2017-03-30 gmungocMerge branch 'develop' into bug/JAL-1608createGroups bug/JAL-1608createGroups
2017-03-30 gmungocJAL-1608 leave Create Group, Remove Group menu items...
2017-02-27 gmungocJAL-1632 dialog to calculate either Tree or PCA
2017-02-13 gmungocJAL-1632 first cut of Tree chooser dialog and ScoreMode...
2017-02-09 gmungocJAL-1608 menu entry text; enable/disable Create/Remove...
2017-02-08 gmungocJAL-2399 JAL-2400 tidy Text Colour wording, behaviour...
2017-01-23 gmungocJAL-2386 unit tests for change colour (and minor refact...
2017-01-20 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-19 gmungocJAL-2383 restore PID colour threshold from project...
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-11 gmungocJAL-2344 FileFormats singleton for formats, FileFormatI...
2016-12-21 gmungocJAL-2360 ColourMenuHelper now builds and selects items...
2016-12-20 gmungocJAL-2360 ColourSchemes holds configured schemes, AlignF...
2016-12-19 gmungocJAL-2361 select colour menu item by matching its name...
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum,
2016-12-13 gmungocJAL-2361 adding items to applet colour menus, TCoffee...
2016-12-12 gmungocJAL-2361 extract methods to (re-)build colour menu
2016-12-09 gmungocJAL-1895 suppress RNA interaction colour option
2016-11-28 gmungocMerge branch 'develop' into trialMerge
2016-11-25 gmungocMerge branch 'develop' into trialMerge
2016-11-24 gmungocDistinguish text-only output formats and others (.jar...
2016-11-24 tcofoegbuJAL-2326 updated references of JOptionPane to JvOptionPane
2016-11-24 gmungocFileFormatI further tweaks, clean compile
2016-11-22 Jim ProcterJAL-1738 JAL-345 changed keystroke to ‘B’ (with modifie...
2016-11-02 Jim ProcterJAL-345 JAL-1738 menu item, AlignFrame action listener...
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-10-05 Jim ProcterJAL-2189 source formatting
2016-08-31 gmungocJAL-2077 test isPopupTrigger in mouseReleased or mouseC...
2016-08-24 gmungocJAL-1355 correct 'thereshold' to 'threshold' in message...
2016-08-23 gmungocJAL-2176 unused field / methods removed
2016-04-24 Jim ProcterJAL-2077 - reinstate popups on osx
2016-04-22 gmungocJAL-1812 JAL-2068 add Run Groovy Script to AlignFrame...
2015-12-22 gmungocJAL-391 new Calculate options to Reverse, Reverse Compl...
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-10-01 tcofoegbuJAL-1912 refactor annotation refsequence assignemnt...
2015-09-30 tcofoegbuJAL-1912 added support of tcoffee annotation and other...
2015-09-22 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch
2015-09-14 gmungocJAL-1865 fixed so initial state of annotation sort...
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-09-06 Jim ProcterJAL-1645 JAL-1355 UI/i18n: added missing messages,...
2015-07-08 gmungocJAL-1759 merge from develop
2015-07-07 tcofoegbuJAL-1805 test envirionment separation
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
2015-01-20 Charles OfoegbuJAL-1553 enhancement of column selection by annotation...
2015-01-10 Charles OfoegbuJAL-1553 implementation of column selection by annotati...
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-11-24 Jim ProcterMerge branch 'JAL-1569_wuss_vienna_broke' into develop
2014-11-24 Jim ProcterJAL-1595 update annotation sort on opening of the ...
2014-11-13 Jim ProcterMerge branch 'features/JAL-1469_svg-output-for-figure...
2014-11-13 Jim ProcterMerge branch 'features/JAL-1469_svg-output-for-figure...
2014-11-12 Charles OfoegbuAdded support for SVG Export
2014-11-12 Jim ProcterMerge branch 'features/typed_annotations_calcId' into...
2014-11-06 gmungocJAL-1152 use a proper RadioButton not a faked one
2014-11-05 gmungocJAL-1152 new Structure tab on Preferences for SS deriva...
2014-11-03 gmungocJAL-1152 annotation sorting preferences and help docume...
2014-10-31 gmungocJAL-1152 menu tweaks plus new option to put Autocalc...
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