git://source.jalview.org
/
jalview.git
/ history
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
first ⋅ prev ⋅
next
JAL-4059 Converting Pattern/Matcher methods that are possibly incompatible with JS...
[jalview.git]
/
src
/
jalview
/
project
/
2023-10-19
Ben Soares
JAL-4305 Isolate and unify the Jalview object from...
tree
|
commitdiff
2023-09-05
James Procter
JAL-629 use JalviewStructureDisplayI in place of Struct...
tree
|
commitdiff
2023-09-01
Ben Soares
JAL-629 Save structure frames in project files when...
tree
|
commitdiff
2023-09-01
Ben Soares
JAL-629 Fix --structureimage and options
tree
|
commitdiff
2023-08-10
Ben Soares
JAL-629 Change all stdout and stderr output to use...
tree
|
commitdiff
2023-05-22
James Procter
JAL-1551 spotless
tree
|
commitdiff
2023-05-19
James Procter
Merge branch 'develop' into features/JAL-4134_use_annot...
tree
|
commitdiff
2023-05-19
James Procter
JAL-1551 spotlessApply
tree
|
commitdiff
2023-05-19
James Procter
JAL-1551 spotlessApply
tree
|
commitdiff
2023-05-18
James Procter
JAL-4134 column grouping model and methods moved to...
tree
|
commitdiff
2023-05-14
James Procter
JAL-2349 store/restore mappable contact matrix in proje...
tree
|
commitdiff
2023-03-20
James Procter
JAL-4134 override default hasTree so PAE tree is saved!
tree
|
commitdiff
2023-03-17
James Procter
JAL-4134 store/restore Newick tree for PAE annotation row
tree
|
commitdiff
2023-03-15
James Procter
JAL-4134 JAL-3855 store/restore groups, tree and thresh...
tree
|
commitdiff
2023-02-23
James Procter
JAL-4133 update validChar width when font is changed...
tree
|
commitdiff
2023-02-22
James Procter
JAL-4133 store/restore alignment view’s charWidth and...
tree
|
commitdiff
2023-02-22
James Procter
JAL-3858 persist PAE matrix (only so far) as serialised...
tree
|
commitdiff
2023-02-16
James Procter
JAL-1713 don’t close an automatically created overview...
tree
|
commitdiff
2023-02-13
James Procter
Merge branch 'develop' into feature/JAL-1713_overviewIn...
tree
|
commitdiff
2023-02-10
James Procter
Fix for JAL-4126 - don’t automatically create a thresho...
tree
|
commitdiff
2023-01-31
James Procter
JAL-1713 update from Jalview 2.11.3 develop
tree
|
commitdiff
2022-11-08
Ben Soares
JAL-1988 JAL-3772 Fixes highlighted by tests
tree
|
commitdiff
2022-10-25
Ben Soares
JAL-3772 silly NPE error fixed
tree
|
commitdiff
2022-09-26
Ben Soares
JAL-1988 JAL-3772 linked undostack to saved changes...
tree
|
commitdiff
2022-09-23
Ben Soares
JAL-1988 property based fake delay whilst saving projec...
tree
|
commitdiff
2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
tree
|
commitdiff
2022-02-11
Jim Procter
JAL-3949 - refactor logging from jalview.bin.Cache...
tree
|
commitdiff
2022-02-11
Ben Soares
JAL-3949 Complete new abstracted logging framework...
tree
|
commitdiff
2022-02-07
Jim Procter
Merge branch 'feature/JAL-1713_overviewInProject' into...
tree
|
commitdiff
2022-02-07
Jim Procter
JAL-3785 JAL- Merge branch 'bug/JAL-3785autoOverviewTit...
bug/JAL-3785autoOverviewTitle
tree
|
commitdiff
2022-01-17
Ben Soares
close filehandles straight after parse, without setting...
tree
|
commitdiff
2022-01-11
Ben Soares
close filehandles straight after parse, without setting...
tree
|
commitdiff
2021-09-21
Ben Soares
JAL-3691 automatic insertion of Locale.ROOT to toUpperC...
tree
|
commitdiff
2021-08-30
Jim Procter
JAL-3863 add canonical DBRefEntry flag to Jalview project
tree
|
commitdiff
2020-12-19
gmungoc
JAL-1713 restore project with no Overview, regardless...
tree
|
commitdiff
2020-12-17
gmungoc
JAL-1713 close and replace auto-opened Overview with...
tree
|
commitdiff
2020-12-13
gmungoc
JAL-1713 renamed method to OverviewPanel.get/setFrameBo...
tree
|
commitdiff
2020-12-12
gmungoc
JAL-1713 JAL-3119 JAL-3785 refactored get/set Overview...
tree
|
commitdiff
2020-12-10
gmungoc
JAL-1713 read/set OverviewPanel geometry on parent...
tree
|
commitdiff
2020-12-10
gmungoc
JAL-1713 save Overview title in project, don't save...
tree
|
commitdiff
2020-12-10
gmungoc
JAL-1713 save/restore Overview in project (todo: restor...
tree
|
commitdiff
2020-11-13
Ben Soares
JAL-3775 Eclipse re-formatting commit
tree
|
commitdiff
2020-11-12
Ben Soares
JAL-3633 ensure check both or https:// for urls
tree
|
commitdiff
2020-09-23
Ben Soares
JAL-3633 ensure check both or https:// for urls
tree
|
commitdiff
2020-05-29
gmungoc
JAL-3551 null pointer defence while structure files...
feature/JAL-3551Pymol
tree
|
commitdiff
2020-05-26
gmungoc
JAL-1761 pattern for structure viewer construction...
tree
|
commitdiff
2020-05-19
gmungoc
Merge branch 'develop' into feature/JAL-3551Pymol
tree
|
commitdiff
2020-05-15
gmungoc
JAL-3619 default silently to Jmol if viewerType absent...
tree
|
commitdiff
2020-05-11
gmungoc
JAL-2422 restore saved ChimeraX session from project
tree
|
commitdiff
2020-04-30
gmungoc
JAL-3551 save structure viewer session refactorings...
tree
|
commitdiff
2020-03-30
gmungoc
Merge branch 'develop' into Jalview-JS/develop
tree
|
commitdiff
2020-03-09
gmungoc
Merge branch 'develop' into feature/JAL-2422ChimeraX
tree
|
commitdiff
2020-02-04
gmungoc
JAL-2422 pull up refactoring in preparation for Chimera...
tree
|
commitdiff
2019-10-08
gmungoc
Merge branch 'develop' into Jalview-JS/develop
tree
|
commitdiff
2019-08-22
gmungoc
JAL-3121 round trip GFF attributes including map-valued...
tree
|
commitdiff
2019-08-07
gmungoc
Merge branch 'develop' into feature/JAL-3187linkedFeatures
tree
|
commitdiff
2019-07-31
gmungoc
JAL-3389 add .py to restored Chimera session filename...
tree
|
commitdiff
2019-07-16
gmungoc
JAL-3210 Merge branch 'develop' into trialMerge
tree
|
commitdiff
2019-06-07
gmungoc
JAL-3187 save and restore flags for show complement...
tree
|
commitdiff
2019-06-07
gmungoc
Merge branch 'develop' into feature/JAL-3187linkedFeatures
tree
|
commitdiff
2019-06-07
gmungoc
JAL-2738 use GeneLocus extends DBRefEntry to hold chrom...
tree
|
commitdiff
2019-06-06
gmungoc
Merge branch 'develop' into trialMerge
tree
|
commitdiff
2019-05-02
gmungoc
JAL-3244 renamed Platform method for clarity
bug/JAL-3244jmolWindows
tree
|
commitdiff
2019-04-17
gmungoc
JAL-3026 fix bug loading Jalview Project (in Java)
tree
|
commitdiff
2019-03-27
hansonr
consolidation of Platform isJS calls
tree
|
commitdiff
2019-03-20
Ben Soares
JAL-3130 Lots of deprecation fixes. See utils/deprecat...
tree
|
commitdiff
2019-03-15
gmungoc
Merge branch 'develop' into Jalview-JS/develop
tree
|
commitdiff
2019-03-15
gmungoc
JAL-2964 missed branch for restore link tree to all...
tree
|
commitdiff
2019-03-14
gmungoc
JAL-3210 JAL-3141 JAL-3056 disable backups in JalviewJS
tree
|
commitdiff
2019-03-13
gmungoc
Merge branch 'develop' into trialMerge
tree
|
commitdiff
2019-03-11
gmungoc
Merge branch 'develop' into merge/JAL-3127
tree
|
commitdiff
2019-03-11
gmungoc
JAL-3201 restore group colours correctly from project
feature/JAL-2250colourAllGroups
tree
|
commitdiff
2019-03-11
gmungoc
Merge branch 'feature/JAL-3127_seqidChainshading' into...
tree
|
commitdiff
2019-03-04
gmungoc
Merge branch 'bug/JAL-3120restoreFeatureColour' into...
tree
|
commitdiff
2019-02-28
gmungoc
Merge remote-tracking branch 'origin/feature/JAL-3141_b...
tree
|
commitdiff
2019-02-28
Jim Procter
Merge branch 'feature/JAL-3141_backupfiles_for211'...
merge/develop_feature/JAL-3141_backupfiles_for211
tree
|
commitdiff
2019-01-26
hansonr
Jalview.isJS() --> Platform.isJS(), DBRefEntry[] -...
tree
|
commitdiff
2019-01-23
gmungoc
Merge branch 'develop' into feature/JAL-3187linkedFeatures
tree
|
commitdiff
2019-01-23
gmungoc
JAL-3063 correct handling of absent choice element...
tree
|
commitdiff
2019-01-21
gmungoc
JAL-3187 (hacked up) show complement features on struct...
tree
|
commitdiff
2019-01-20
Ben Soares
JAL-3141 Re-added some changes in Jalview2XML missed...
tree
|
commitdiff
2019-01-18
Jim Procter
Merge branch 'feature/JAL-3063jaxbNoCastor' into featur...
tree
|
commitdiff
2019-01-16
Jim Procter
Merge branch 'feature/JAL-3063jaxbNoCastor' into develop
tree
|
commitdiff
2019-01-11
hansonr
(commented out but potentially useful) methods to tap...
tree
|
commitdiff
2018-12-21
gmungoc
JAL-1767 minimise local variable scope
tree
|
commitdiff
2018-12-20
Jim Procter
JAL-1767 port save/load PCA panel to JAXB - JAL-3063
tree
|
commitdiff
2018-12-14
Jim Procter
JAL-3171 record mapping between unmarshalled sequence...
tree
|
commitdiff
2018-12-14
Jim Procter
JAL-3171 raise warning when a dataset reference exists...
tree
|
commitdiff
2018-12-14
Jim Procter
JAL-3171 resolve dataset for imported projects via...
tree
|
commitdiff
2018-12-14
Jim Procter
JAL-3171 register existing dataset for new view
tree
|
commitdiff
2018-12-06
Ben Soares
JAL-3130 incorporating feature/JAL-3063jaxbNoCastor...
tree
|
commitdiff
2018-12-03
gmungoc
JAL-3063 Castor removed from codebase
tree
|
commitdiff
2018-11-15
gmungoc
JAL-3063 remove commented code, suppress debug output
tree
|
commitdiff
2018-11-07
hansonr
JAL-3026-JAL-3063 JAXB unmarshaller fix
tree
|
commitdiff
2018-11-07
hansonr
JAL-3026-JAL-3063 session test files
tree
|
commitdiff
2018-11-06
hansonr
JAXB marshalling by JavaScript successfully unmarshalle...
tree
|
commitdiff
2018-11-02
hansonr
Marshalling produces valid ZIP file. Unmarshalling...
tree
|
commitdiff
2018-10-30
hansonr
JAL-3026-JAL-3063 adds binary ext to J2S
tree
|
commitdiff
2018-09-24
gmungoc
JAL-3063 tidy commented out code
tree
|
commitdiff
2018-09-21
gmungoc
JAL-3063 wrappers with check for null getting optional...
tree
|
commitdiff
next