2019-03-25 |
gmungoc | JAL-3215 refactored ScoreColourScheme construction... |
tree | commitdiff |
2019-03-25 |
gmungoc | JAL-3215 remove redundant min/max constants, refactor... |
tree | commitdiff |
2019-03-12 |
gmungoc | Merge branch 'feature/JAL-3127_seqidChainshading' into... |
tree | commitdiff |
2019-03-12 |
gmungoc | JAL-3127 check for null viewport feature/JAL-3127_seqidChainshading |
tree | commitdiff |
2019-03-11 |
gmungoc | Merge branch 'feature/JAL-3127_seqidChainshading' into... |
tree | commitdiff |
2019-03-11 |
gmungoc | JAL-3206 strict above/below threshold test restored |
tree | commitdiff |
2019-03-07 |
gmungoc | Merge branch 'feature/JAL-3180colourAnnotationMenu... |
tree | commitdiff |
2019-03-05 |
gmungoc | Merge remote-tracking branch 'origin/features/JAL-2620a... |
tree | commitdiff |
2019-03-05 |
gmungoc | Merge remote-tracking branch 'origin/bug/JAL-3049colour... |
tree | commitdiff |
2019-03-04 |
gmungoc | JAL-3206 avoid divide by zero when threshold is graphMi... |
tree | commitdiff |
2019-03-04 |
gmungoc | Merge branch 'bug/JAL-3120restoreFeatureColour' into... |
tree | commitdiff |
2019-03-01 |
gmungoc | Merge branch 'bug/JAL-2791exportFilteredFeature' into... |
tree | commitdiff |
2019-02-28 |
gmungoc | Merge remote-tracking branch 'origin/feature/JAL-3141_b... |
tree | commitdiff |
2019-02-28 |
Jim Procter | Merge branch 'feature/JAL-3141_backupfiles_for211'... merge/develop_feature/JAL-3141_backupfiles_for211 |
tree | commitdiff |
2019-02-25 |
gmungoc | JAL-3200 fast lookup of DSSP3 notation |
tree | commitdiff |
2019-01-16 |
Jim Procter | Merge branch 'features/pca_jaxb_datasetrefs_JAL-3171_JA... |
tree | commitdiff |
2019-01-04 |
gmungoc | JAL-3180 fix By Annotation selection state in colour... |
tree | commitdiff |
2018-12-03 |
gmungoc | JAL-3063 Castor removed from codebase |
tree | commitdiff |
2018-12-03 |
gmungoc | Merge branch 'feature/JAL-3063JAXB' into feature/JAL... |
tree | commitdiff |
2018-11-20 |
Jim Procter | JAL-3127 Sequence ID Colour and nominal spanish translation |
tree | commitdiff |
2018-11-19 |
Jim Procter | JAL-3127 javadoc, don’t darken white when shading resid... |
tree | commitdiff |
2018-11-19 |
Jim Procter | JAL-3127 drop redundant hidden representative sequences... |
tree | commitdiff |
2018-10-16 |
Jim Procter | JAL-3127 always look up sequence ID colour from view... |
tree | commitdiff |
2018-10-09 |
Jim Procter | JAL-3127 Colour sequences by ID - need to check that... |
tree | commitdiff |
2018-10-09 |
Jim Procter | JAL-3127 pass reference to AlignViewportI when creating... |
tree | commitdiff |
2018-09-27 |
gmungoc | JAL-2791 new method to test if feature fails colour... |
tree | commitdiff |
2018-09-21 |
gmungoc | JAL-3120 preserve feature colour/mincolour/maxcolour... bug/JAL-3120restoreFeatureColour |
tree | commitdiff |
2018-09-20 |
gmungoc | JAL-2843 help text for colour by attribute, feature... |
tree | commitdiff |
2018-09-18 |
gmungoc | JAL-3063 Save/Load user defined colours using JAXB |
tree | commitdiff |
2018-06-29 |
gmungoc | JAL-3049 JAL-2069 colour icon tooltip including by... |
tree | commitdiff |
2018-03-16 |
gmungoc | JAL-2620 alternative genetic code translation tables |
tree | commitdiff |
2018-01-30 |
gmungoc | JAL-1793 update spike build to latest incl stop and... |
tree | commitdiff |
2018-01-30 |
gmungoc | JAL-2898 show 'stop_gained' variants on peptide sequences |
tree | commitdiff |
2018-01-10 |
gmungoc | JAL-1793 update spike branch to latest |
tree | commitdiff |
2017-12-11 |
gmungoc | JAL-2843 add colour by attribute, and no value colour... |
tree | commitdiff |
2017-11-22 |
gmungoc | JAL-2069 spike updated with latest (FeatureTypeSettings) |
tree | commitdiff |
2017-11-22 |
gmungoc | JAL-2069 Javadoc added only |
tree | commitdiff |
2017-11-16 |
gmungoc | JAL-2069 removed unused and redundant thresholdIsMinMax |
tree | commitdiff |
2017-11-15 |
gmungoc | JAL-2816 exclude filtered / thresholded out features... |
tree | commitdiff |
2017-11-15 |
gmungoc | JAL-2835 spike updated with latest |
tree | commitdiff |
2017-11-15 |
gmungoc | JAL-2835 support filter/colour by nested attribute... |
tree | commitdiff |
2017-11-07 |
gmungoc | JAL-2069 update spike with latest |
tree | commitdiff |
2017-11-07 |
gmungoc | JAL-2069 corrected overloaded constructor behaviour |
tree | commitdiff |
2017-11-07 |
gmungoc | JAL-2069 update spike branch with latest |
tree | commitdiff |
2017-11-07 |
gmungoc | JAL-2069 add attributeName and noValueColour to Feature... |
tree | commitdiff |
2017-11-02 |
gmungoc | JAL-2808 reverted to develop (attribute filters removed) |
tree | commitdiff |
2017-10-31 |
gmungoc | JAL-2808 revised util.matcher package, 2 filter conditi... |
tree | commitdiff |
2017-10-30 |
gmungoc | JAL-2808 add attribute filter(s) to FeatureColour |
tree | commitdiff |
2017-10-24 |
gmungoc | JAL-2738 update spike branch with latest |
tree | commitdiff |
2017-10-12 |
Jim Procter | JAL-2773 add new flag to paintAlignment(updateOverview... features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview |
tree | commitdiff |
2017-10-03 |
gmungoc | JAL-2738 copy to spikes/mungo |
tree | commitdiff |
2017-09-03 |
Jim Procter | Merge branch 'documentation/JAL-2675_release2102b1... |
tree | commitdiff |
2017-08-21 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList |
tree | commitdiff |
2017-08-18 |
Jim Procter | Merge branch 'feature/2588' into merge/develop_feature... |
tree | commitdiff |
2017-08-16 |
Jim Procter | JAL-2418 add GPL to main sources |
tree | commitdiff |
2017-08-16 |
Jim Procter | JAL-2418 source formatting |
tree | commitdiff |
2017-08-09 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-07-24 |
gmungoc | spike branch updated from latest features/JAL-2446 |
tree | commitdiff |
2017-07-24 |
gmungoc | JAL-2624 additional tests for FeatureColour.getColour(), |
tree | commitdiff |
2017-07-23 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-06-28 |
kiramt | JAL-2588 Gap colour scheme now shown in overview |
tree | commitdiff |
2017-06-27 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-06-14 |
gmungoc | JAL-2598 Sequence.getSequence return a copy of the... |
tree | commitdiff |
2017-06-09 |
gmungoc | JAL-2446 merged to spike branch |
tree | commitdiff |
2017-06-09 |
gmungoc | JAL-2592 distinguish "User Defined" (scheme name) from... bug/JAL-2592userDefinedScheme |
tree | commitdiff |
2017-06-06 |
gmungoc | JAL-2589 correct colour for Gap in Score and User Defin... |
tree | commitdiff |
2017-04-07 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices |
tree | commitdiff |
2017-04-05 |
gmungoc | JAL-2361 apply any saved changes to current colour... |
tree | commitdiff |
2017-03-30 |
gmungoc | Merge branch 'develop' into bug/JAL-2346annotationChoice |
tree | commitdiff |
2017-03-24 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices |
tree | commitdiff |
2017-03-24 |
Jim Procter | JAL-2360 fix applet build by separating castor XML... |
tree | commitdiff |
2017-02-23 |
gmungoc | JAL-2403 JAL-1483 changes to ScoreModelI hierarchy... |
tree | commitdiff |
2017-02-20 |
gmungoc | JAL-2403 ScoreModelI now DistanceModelI, ScoreMatrix... |
tree | commitdiff |
2017-02-20 |
Jim Procter | Merge branch 'features/JAL-2379pcaMemory' into develop |
tree | commitdiff |
2017-02-18 |
gmungoc | JAL-2416 better encapsulated 'constants' for BLOSUM62... |
tree | commitdiff |
2017-02-17 |
gmungoc | JAL-2416 BLOSUM62 removed from ResidueProperties |
tree | commitdiff |
2017-02-17 |
gmungoc | JAL-2416 removed DNA and PAM250 matrices from ResiduePr... |
tree | commitdiff |
2017-02-17 |
gmungoc | JAL-2416 scoreMatrices removed from ResidueProperties |
tree | commitdiff |
2017-02-14 |
gmungoc | JAL-2346 remove refactored fields, fix test for above... |
tree | commitdiff |
2017-02-14 |
gmungoc | Merge branch 'develop' into bug/JAL-2346annotationChoice |
tree | commitdiff |
2017-02-13 |
gmungoc | JAL-1632 JAL-2416 load score matrices from file, as... |
tree | commitdiff |
2017-02-13 |
gmungoc | JAL-1632 first cut of Tree chooser dialog and ScoreMode... |
tree | commitdiff |
2017-02-09 |
gmungoc | JAL-2401 change 'Lower Case Colour' to checkbox with... |
tree | commitdiff |
2017-02-09 |
gmungoc | Merge branch 'develop' into features/JAL-2379pcaMemory features/JAL-2379pcaMemory |
tree | commitdiff |
2017-02-09 |
gmungoc | JAL-2371 skip upper-casing consensus as it already is |
tree | commitdiff |
2017-02-07 |
gmungoc | JAL-2397 PCA gap cost uses last column of score matrix |
tree | commitdiff |
2017-02-07 |
gmungoc | JAL-2398 corrected entry for C->R in Blosum62 matrix |
tree | commitdiff |
2017-02-06 |
gmungoc | JAL-2379 computePairwiseScores() moved to ScoreMatrix |
tree | commitdiff |
2017-02-03 |
gmungoc | JAL-2379 'direct' pairwise score calculation for PCA... |
tree | commitdiff |
2017-02-01 |
gmungoc | JAL-2371 (slight!) simplification of isApplicableTo() |
tree | commitdiff |
2017-01-31 |
gmungoc | JAL-2385 more tests/bug fixes mostly for gui.SliderPane... |
tree | commitdiff |
2017-01-27 |
gmungoc | JAL-2371 CollectionColourScheme renamed ResidueShader... |
tree | commitdiff |
2017-01-27 |
gmungoc | JAL-2360 JAL-2371 updates from review CR-JAL-1 |
tree | commitdiff |
2017-01-26 |
gmungoc | JAL-2360 corrected comment |
tree | commitdiff |
2017-01-09 |
gmungoc | JAL-2371 remove ColourSchemeI.findColour(c), pure inter... |
tree | commitdiff |
2017-01-06 |
gmungoc | JAL-2371 slight simplification of findColour overrides |
tree | commitdiff |
2017-01-06 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicabilit... |
tree | commitdiff |
2017-01-06 |
gmungoc | JAL-2360 findColour() with no args removed from ColourS... |
tree | commitdiff |
2017-01-04 |
gmungoc | JAL-2371 CollectionColourScheme wraps ColourSchemeI |
tree | commitdiff |
2016-12-29 |
gmungoc | JAL-2630 first pass groovy colour scheme (with slight... |
tree | commitdiff |
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