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JAL-4059 fix that boolean for non-value query string args
[jalview.git]
/
src
/
jalview
/
structures
/
models
/
2023-11-03
James Procter
JAL-4090 JAL-1551 spotlessApply
tree
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commitdiff
2023-10-20
James Procter
JAL-4307 also report molecule name in tooltip for show...
feature/JAL-4307_hetatm_showhide
tree
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commitdiff
2023-10-19
James Procter
JAL-4307 View->Ligands submenu, implementation for...
tree
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commitdiff
2023-10-17
James Procter
JAL-4089 selected columns are reported in absolute...
tree
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commitdiff
2023-09-20
James Procter
JAL-4265 JAL-4267 added a ‘restoreSession’ StructureVie...
tree
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commitdiff
2023-09-20
James Procter
JAL-4265 JAL-4267 allow injection of custom commands...
tree
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commitdiff
2023-08-10
Ben Soares
JAL-629 Change all stdout and stderr output to use...
tree
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commitdiff
2023-05-19
James Procter
JAL-1551 spotlessApply
tree
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commitdiff
2023-05-16
James Procter
JAL-4089 - if no centerViewOn commands are given, don...
tree
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commitdiff
2022-10-28
Jim Procter
JAL-4089 use column selection to superpose if 4 or...
tree
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commitdiff
2022-06-09
Jim Procter
JAL-4026 ignore StructureSelectionManager events if...
tree
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commitdiff
2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
tree
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commitdiff
2022-02-15
Jim Procter
JAL-1761 backbone type parameter for configuring which...
tree
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commitdiff
2022-02-15
Jim Procter
JAL-1761 need to pass molecule type when generating...
tree
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commitdiff
2022-02-11
Jim Procter
JAL-3949 - refactor logging from jalview.bin.Cache...
tree
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commitdiff
2022-02-11
Ben Soares
JAL-3949 Complete new abstracted logging framework...
tree
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commitdiff
2021-10-18
Jim Procter
JAL-3905 Fix: wait for response when sending mouseovers...
bug/r2_11_2/JAL-3904_structureviewermenu
tree
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commitdiff
2021-09-21
Ben Soares
JAL-3691 automatic insertion of Locale.ROOT to toUpperC...
tree
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commitdiff
2021-09-14
Jim Procter
JAL-3551 - doc tweak
tree
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commitdiff
2021-09-02
Jim Procter
Merge branch 'develop' into features/r2_11_2/JAL-3829_3...
tree
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commitdiff
2021-09-02
gmungoc
JAL-3509 coerce RESNUM to hidden (really) after fetchin...
tree
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commitdiff
2021-08-30
Jim Procter
JAL-3674 Jmol seems to sometimes return a null for...
tree
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commitdiff
2021-07-27
Jim Procter
JAL-3674 Jmol seems to sometimes return a null for...
tree
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commitdiff
2020-06-29
gmungoc
JAL-3674 more finessed asynchronous structure commands
tree
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commitdiff
2020-06-26
gmungoc
JAL-3518 tidy up asynchronous structure command execution
tree
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commitdiff
2020-06-25
gmungoc
JAL-3518 pull up [get|list]ResidueAttributes to Structu...
tree
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commitdiff
2020-06-23
gmungoc
JAL-3518 separation of ChimeraXManager, pull up of...
tree
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commitdiff
2020-06-23
gmungoc
JAL-3518 pull up closeViewer() and external viewer...
tree
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commitdiff
2020-05-29
gmungoc
JAL-3551 null pointer defence while structure files...
feature/JAL-3551Pymol
tree
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commitdiff
2020-05-28
gmungoc
JAL-2422 correct ChimeraX save/open session commands...
tree
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commitdiff
2020-05-26
gmungoc
JAL-1761 pattern for structure viewer construction...
tree
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commitdiff
2020-05-21
gmungoc
JAL-3551 copy Jalview features to Pymol 'p' (with pull...
tree
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commitdiff
2020-05-15
gmungoc
JAL-3551 pull up Close Viewer dialog to base class
tree
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commitdiff
2020-05-12
gmungoc
JAL-3518 tidy method, remove obsolete comment
tree
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commitdiff
2020-04-30
gmungoc
JAL-3551 save structure viewer session refactorings...
tree
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commitdiff
2020-03-16
gmungoc
JAL-3551 tidying, improved commands, fix Jmol model...
tree
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commitdiff
2020-03-13
gmungoc
JAL-3551 working proof of concept of Jalview driving...
tree
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commitdiff
2020-03-03
gmungoc
JAL-3518 more pull up / test coverage of structure...
tree
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commitdiff
2020-02-28
gmungoc
JAL-3518 basic refactoring / pull up of superposeStruct...
tree
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commitdiff
2020-02-21
gmungoc
JAL-3518 more extraction of ChimeraX commands as overrides
tree
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commitdiff
2020-02-21
gmungoc
JAL-2422 general pull-up/removal of common or unused...
tree
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commitdiff
2020-02-20
gmungoc
JAL-2422 pull-up refactoring of structure commands...
tree
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commitdiff
2020-02-04
gmungoc
JAL-2422 pull up refactoring in preparation for Chimera...
tree
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commitdiff
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
tree
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commitdiff
2017-08-27
Jim Procter
JAL-2691 catchall if passed dataset sequences (tests...
tree
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commitdiff
2017-08-27
Jim Procter
JAL-2693 TODO comments
tree
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commitdiff
2017-08-27
Jim Procter
JAL-2691 discover any existing chain mappings for a...
tree
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commitdiff
2017-08-16
Jim Procter
JAL-2418 source formatting
tree
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commitdiff
2017-06-09
gmungoc
JAL-2446 merged to spike branch
tree
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commitdiff
2017-05-29
Jim Procter
Merge branch 'features/JAL-2465_No-mapping_Jmol-structu...
tree
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commitdiff
2017-05-01
tcofoegbu
JAL-2465 bugfix and rerefactor renamed getPdbFile(...
tree
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commitdiff
2017-04-24
kiramt
JAL-2388 Hidden cols separated from column selection...
tree
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commitdiff
2017-03-21
gmungoc
JAL-2243 update discovered features on opening structur...
tree
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commitdiff
2017-03-13
gmungoc
JAL-2438 FeatureColourFinder refactored from FeatureRen...
tree
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commitdiff
2017-03-08
gmungoc
JAL-2430 colour columns hidden in alignment gray on...
tree
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commitdiff
2017-03-07
gmungoc
JAL-2295 status messages for Chimera attributes set...
tree
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commitdiff
2016-12-22
gmungoc
JAL-2360 structure viewers now using ColourMenuHelper...
tree
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commitdiff
2016-11-30
Jim Procter
Merge branch 'features/JAL-2320_closeChimeraAction...
tree
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commitdiff
2016-11-25
gmungoc
Merge branch 'develop' into trialMerge
tree
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commitdiff
2016-11-10
tcofoegbu
Bugfix to enable accurate chain extraction/association...
tree
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commitdiff
2016-11-10
gmungoc
JAL-2320 added getViewer() method to return Chimera...
tree
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commitdiff
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
tree
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commitdiff
2016-10-24
Jim Procter
Merge branch 'releases/Release_2_10_0_Branch'
tree
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commitdiff
2016-10-14
gmungoc
Merge branch 'releases/Release_2_10_Branch' into task...
task/JAL-2196pdbeProperties
tree
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commitdiff
2016-10-13
gmungoc
JAL-2044 ensure AAStructureBindingModel.pdbEntry has...
tree
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commitdiff
2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
tree
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commitdiff
2016-09-13
gmungoc
JAL-2196 refactor PDBEntry.getProperty,setProperty...
tree
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commitdiff
2016-07-11
gmungoc
file format enum wip changes
tree
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commitdiff
2016-06-02
tcofoegbu
JAL-2020 fix for Jmol choking jalview while loading...
tree
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commitdiff
2016-03-24
gmungoc
JAL-2032 structure follow mouseover in a copy of a...
tree
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commitdiff
2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
tree
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commitdiff
2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
tree
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commitdiff
2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
tree
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commitdiff
2015-09-10
Jim Procter
JAL-1645 licencing for new files in src
tree
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commitdiff
2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
tree
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commitdiff
2015-08-19
gmungoc
JAL-1742 suppress 'add chain' option for Jmol, pull...
tree
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commitdiff
2015-06-05
gmungoc
JAL-1752 structure highlight scoped to only its mapped...
tree
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commitdiff
2015-06-05
gmungoc
JAL-1622 fix bug computing superposition + associated...
tree
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commitdiff
2015-06-04
gmungoc
JAL-1750 View Mapping scoped to that viewer's mappings...
tree
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commitdiff
2015-06-04
gmungoc
JAL-1742 don't offer to align another chain to the...
tree
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commitdiff
2015-05-20
gmungoc
JAL-1741 nucleotide-aware colour schemes applied to...
tree
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commitdiff
2015-03-26
gmungoc
Merge develop to Release_2_8_3_Branch
tree
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commitdiff
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
tree
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commitdiff
2015-03-06
Jim Procter
Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
tree
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commitdiff
2015-01-08
gmungoc
JAL-1588 part work save/restore of Chimera session
tree
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commitdiff
2015-01-06
gmungoc
JAL-1588 refactoring prior to 'save Chimera project'
tree
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commitdiff
2014-12-15
Jim Procter
JAL-1620 version bump and release notes
tree
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commitdiff
2014-07-02
Jim Procter
JAL-1333 JAL-1527 refactors to create core structure...
tree
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commitdiff