source.jalview.org Git - jalview.git/history

git://source.jalview.org / jalview.git / history

2011-10-04	jprocter	Merge remote-tracking branch 'remotes/origin/2_5_1_rna_...	tree \| commitdiff
2011-09-27	jprocter	apply version 2.7 copyright	tree \| commitdiff
2011-08-19	jprocter	JAL-908 JAL-701 refactored HTML escape/unescape code...	tree \| commitdiff
2011-07-25	janengelhardt	Start merging of Laurens Code	tree \| commitdiff
2011-05-30	jprocter	first patch for JAL-838 - allow new typed of PID calcs	tree \| commitdiff
2010-09-23	jprocter	apply jalview code style	tree \| commitdiff
2010-09-23	jprocter	Jalview 2.6 source licence	tree \| commitdiff
2010-09-10	jprocter	early bail out for long urls, and threaded off group...	tree \| commitdiff
2010-09-09	jprocter	wrap tooltips and revise layout (JAL-644)	tree \| commitdiff
2010-04-30	jprocter	jalview 2.5 release banner	tree \| commitdiff
2010-04-02	jprocter	cli length limit	tree \| commitdiff
2010-04-02	jprocter	urllength limit and more efficient url construction	tree \| commitdiff
2010-03-26	jprocter	sync for cvs wierdness	tree \| commitdiff
2010-03-26	jprocter	sync for cvs wierdness	tree \| commitdiff
2010-02-09	jprocter	token replacement engine for generation of urls for...	tree \| commitdiff
2010-02-09	jprocter	qsort objects on integers	tree \| commitdiff
2009-07-24	jprocter	headless test	tree \| commitdiff
2009-06-19	jprocter	debug comments	tree \| commitdiff
2009-06-19	jprocter	new coverage comparison - no test case in main method yet	tree \| commitdiff
2009-06-12	jprocter	javadoc	tree \| commitdiff
2009-06-08	jprocter	apply gpl development license	tree \| commitdiff
2009-02-24	jprocter	allow label to be set independently of parsed input...	tree \| commitdiff
2008-11-12	jprocter	jar inputstream provider enabling multiple jar entries...	tree \| commitdiff
2008-09-04	jprocter	merge from 2_4_Release branch	tree \| commitdiff
2008-08-11	jprocter	regular expression based URL link generation	tree \| commitdiff
2008-08-01	jprocter	todo	tree \| commitdiff
2007-11-30	jprocter	bugfixed MapList (must be propagated to vamsas version...	tree \| commitdiff
2007-10-26	jprocter	new applet and application utility class for platform...	tree \| commitdiff
2007-10-24	jprocter	add parsed PDB reference to sequences	tree \| commitdiff
2007-09-29	jprocter	javadoc	tree \| commitdiff
2007-09-07	jprocter	added a more general DBRef search interface	tree \| commitdiff
2007-07-25	jprocter	uniprot synonym	tree \| commitdiff
2007-07-13	jprocter	new search method for finding references like other...	tree \| commitdiff
2007-07-13	jprocter	bugfix and comments	tree \| commitdiff
2007-06-18	jprocter	1.1 methods	tree \| commitdiff
2007-05-02	jprocter	fixed getIntervals bug to ensure it returns range from...	tree \| commitdiff
2007-04-30	jprocter	javadoc	tree \| commitdiff
2007-04-26	jprocter	double sort functions	tree \| commitdiff
2007-04-25	jprocter	moving word methods to MapList and begin bug-fix for...	tree \| commitdiff
2007-04-17	jprocter	proper copy constructor (not clone)	tree \| commitdiff
2007-04-02	amwaterhouse	addElement	tree \| commitdiff
2007-03-23	jprocter	removed Iterator usage.	tree \| commitdiff
2007-03-19	jprocter	New method for mapping from common database sources...	tree \| commitdiff
2007-03-19	jprocter	mapping implemented by MapList added to DBRefEntry.	tree \| commitdiff
2007-02-07	amwaterhouse	Formatting	tree \| commitdiff
2007-01-25	jprocter	checks for irreflexive mapping in main tester	tree \| commitdiff
2007-01-24	jprocter	kkv change	tree \| commitdiff
2007-01-24	jprocter	Map arbitrary series of non-overlapping integer interva...	tree \| commitdiff
2006-12-21	amwaterhouse	remove unnecessary import	tree \| commitdiff
2006-12-05	amwaterhouse	sequence is char []	tree \| commitdiff
2006-10-24	amwaterhouse	Remove unneccessary import	tree \| commitdiff
2006-10-24	amwaterhouse	Make everything final	tree \| commitdiff
2006-08-22	amwaterhouse	make 1.1 compatible	tree \| commitdiff
2006-08-22	jprocter	hidden region recovery in JPred and new hidden region...	tree \| commitdiff
2006-08-21	amwaterhouse	header updated	tree \| commitdiff
2006-08-21	amwaterhouse	1.1 compatible	tree \| commitdiff
2006-08-21	jprocter	inverse ShiftList and SequenceI.gapMap->ShiftList methods.	tree \| commitdiff
2006-08-09	jprocter	fixed multiple shifts bug.	tree \| commitdiff
2006-08-07	amwaterhouse	1.1 compatible	tree \| commitdiff
2006-08-04	jprocter	recover original data for tree and pca as alignment...	tree \| commitdiff
2006-07-26	jprocter	Ignore list created	tree \| commitdiff
2006-07-21	amwaterhouse	DBRefs now array	tree \| commitdiff
2006-07-18	amwaterhouse	Takes strings, not seqs	tree \| commitdiff
2006-07-07	amwaterhouse	Optimised PID method	tree \| commitdiff
2006-06-08	jprocter	Introduced DbRefEntry to DasSourceCoordinateSystem...	tree \| commitdiff
2006-06-07	amwaterhouse	NEW FILES	tree \| commitdiff
2006-03-14	jprocter	methods for searching DBRef lists	tree \| commitdiff
2005-12-22	amwaterhouse	Remove main method	tree \| commitdiff
2005-12-12	amwaterhouse	Check if user cancelled before making image	tree \| commitdiff
2005-12-06	amwaterhouse	after merge	tree \| commitdiff
2005-09-30	amwaterhouse	Remove redundancy in Eclipse	tree \| commitdiff
2005-08-18	jprocter	made changes to DEFAULT_BROWSER in user preferences...	tree \| commitdiff
2005-08-18	jprocter	various case sensitivity bugs fixed in residue comparis...	tree \| commitdiff
2005-08-15	amwaterhouse	isGap slightly more efficient	tree \| commitdiff
2005-08-09	amwaterhouse	Cache.getDefault	tree \| commitdiff
2005-06-30	amwaterhouse	Formatting changes	tree \| commitdiff
2005-06-08	amwaterhouse	Formatted source	tree \| commitdiff
2005-06-08	amwaterhouse	GPL license added	tree \| commitdiff
2005-06-07	jprocter	added a couple of debug statements for unix browser...	tree \| commitdiff
2005-06-05	jprocter	firefox now default for unixen.	tree \| commitdiff
2005-06-03	jprocter	Reinstated 'create tree from selected region only'...	tree \| commitdiff
2005-06-02	jprocter	minor changes to make jalopy happy	tree \| commitdiff
2005-05-31	jprocter	Moved comment so it doesn't break jalopy (this is not...	tree \| commitdiff
2005-05-30	jprocter	comments	tree \| commitdiff
2005-05-27	jprocter	Addred GapChar string for convenient regex construction	tree \| commitdiff
2005-05-25	amwaterhouse	getHexString added	tree \| commitdiff
2005-05-25	jprocter	added jalview.browser property so a linux user can...	tree \| commitdiff
2005-03-23	amwaterhouse	no longer used	tree \| commitdiff
2005-03-08	jprocter	fixed interface for PID method.	tree \| commitdiff
2005-01-24	amwaterhouse	bug in compare fixed	tree \| commitdiff
2004-12-16	amwaterhouse	ilen and jlen no longer +1	tree \| commitdiff
2004-12-15	amwaterhouse	isGap method added to utils	tree \| commitdiff
2004-11-02	amwaterhouse	Jalview Imported Sources start	tree \| commitdiff

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