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JAL-2480 make fiels of Range private
[jalview.git]
/
src
/
jalview
/
util
/
2016-08-29
Jim Procter
JAL-2154 canonical dbsources are lowercased before...
tree
|
commitdiff
2016-08-29
Jim Procter
JAL-2154 ENA specific Ensembl canonical db prefixes
tree
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commitdiff
2016-08-25
Jim Procter
Merge branch 'develop' into refactor/JAL-2106_sourceDbR...
tree
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commitdiff
2016-08-23
Jim Procter
Merge branch 'develop' into bug/JAL-2154projectMappings
tree
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commitdiff
2016-08-18
gmungoc
JAL-2077 handling Cmd-click in scale panel for Mac...
tree
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commitdiff
2016-08-09
Jim Procter
JAL-2154 test for CDS->protein map
tree
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commitdiff
2016-08-07
Jim Procter
JAL-2154 add in missing class for createDatasetAlignmen...
tree
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commitdiff
2016-08-04
Jim Procter
JAL-2154 test for CDS->protein map
tree
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commitdiff
2016-07-14
Jim Procter
JAL-2147 findMappingsBetweenSequenceAndOthers for scopi...
tree
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commitdiff
2016-07-01
gmungoc
JAL-2110 bug fixing and tidying for get cross-refs
tree
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commitdiff
2016-06-21
Jim Procter
Merge branch 'features/JAL-2110_crossRefDuplications...
tree
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commitdiff
2016-06-17
tcofoegbu
JAL-1976 clear message if export is cancelled at 'Rende...
tree
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commitdiff
2016-06-17
tcofoegbu
JAL-1976 added an intermediate message between a user...
tree
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commitdiff
2016-06-15
Jim Procter
Merge branch 'develop' into features/JAL-2110_crossRefD...
tree
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commitdiff
2016-06-14
gmungoc
JAL-2114 more helpful reporting of parse failures
tree
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commitdiff
2016-06-14
gmungoc
JAL-1686 JAL-2110 equals and/or hashCode method added
tree
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commitdiff
2016-06-09
gmungoc
JAL-2110 work in progress
tree
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commitdiff
2016-06-09
gmungoc
Merge branch 'develop' into features/JAL-2110_makeSense...
tree
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commitdiff
2016-06-09
gmungoc
JAL-2114 corrected Javadoc
tree
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commitdiff
2016-06-03
gmungoc
JAL-2110 random stuff
tree
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commitdiff
2016-06-02
gmungoc
Merge branch 'develop' into features/JAL-2110_makeSense...
tree
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commitdiff
2016-05-30
Jim Procter
JAL-2077 fix: convenience method and checks for CMD...
tree
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commitdiff
2016-05-26
tcofoegbu
JAL-1911 bugfix - do not save i18n text in preference...
tree
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commitdiff
2016-05-26
tcofoegbu
merge
tree
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commitdiff
2016-05-26
tcofoegbu
JAL-1911 bugfix - do not save i18n text in preference...
tree
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commitdiff
2016-05-23
gmungoc
Merge branch 'develop' into features/JAL-2110_makeSense...
tree
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commitdiff
2016-05-20
gmungoc
JAL-2114 accept "<123..178" or "123..>178" format
tree
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commitdiff
2016-05-20
gmungoc
JAL-2110 unit tests for and minor refactoring of CrossRef
tree
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commitdiff
2016-05-19
gmungoc
JAL-2114 added single-locus case and more error tests
tree
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commitdiff
2016-05-19
gmungoc
JAL-2114 parser + tests for GenBank location descriptors
tree
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commitdiff
2016-05-18
gmungoc
JAL-2049 use HGVS notation for variant on protein residue
tree
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commitdiff
2016-05-13
gmungoc
JAL-2105 capture Ensembl data version, check REST versi...
tree
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commitdiff
2016-04-22
gmungoc
JAL-2068 code and test for case of minValue == maxValue
tree
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commitdiff
2016-04-22
gmungoc
JAL-2068 convenience helper method for graduated score...
tree
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commitdiff
2016-04-14
gmungoc
JAL-1705 refactored/utility methods to detect e.g....
tree
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commitdiff
2016-04-01
gmungoc
JAL-1705 tweak to MapList.toString for debugging
tree
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commitdiff
2016-04-01
gmungoc
JAL-1705 generalised getLength() to handle [start1...
tree
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commitdiff
2016-03-21
gmungoc
JAL-2029 many-to-many EnsemblCDS-to-Uniprot mappings
tree
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commitdiff
2016-03-11
gmungoc
JAL-1705 javadoc added only
tree
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commitdiff
2016-03-03
gmungoc
JAL-1705 include stop codons in derived CDS; support...
tree
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commitdiff
2016-03-01
gmungoc
JAL-1705 align CDS and peptide products to transcripts
tree
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commitdiff
2016-02-19
gmungoc
JAL-1705 lenient DBRef matcher added (accession id...
tree
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commitdiff
2016-02-19
gmungoc
JAL-1705 helper method for mapping excluding stop codon
tree
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commitdiff
2016-02-12
gmungoc
Merge branch 'develop' into
tree
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commitdiff
2016-02-09
tcofoegbu
JAL-1975 updated image export pipeline to produce more...
tree
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commitdiff
2016-02-04
gmungoc
Merge branch 'develop' into features/JAL-653_JAL-1766_h...
tree
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commitdiff
2016-02-04
gmungoc
JAL-2005 added (stable) sort methods parameterised by
tree
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commitdiff
2016-01-29
gmungoc
JAL-1705 fetch Uniprot and PDB xrefs for Ensembl protei...
tree
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commitdiff
2016-01-28
gmungoc
Merge branch 'develop' into JAL-1705_trialMerge
tree
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commitdiff
2016-01-28
gmungoc
JAL-1705 merge contiguous ranges when constructing...
tree
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commitdiff
2016-01-21
gmungoc
JAL-1705 isFromForwardStrand added; toString (for debug...
tree
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commitdiff
2016-01-21
gmungoc
JAL-1705 canonicalise ENSEMBL name; code tidy
tree
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commitdiff
2016-01-11
gmungoc
JAL-1989 map hidden column ranges
tree
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commitdiff
2016-01-08
gmungoc
JAL-1705 DbSourceProxy properties converted to methods...
tree
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commitdiff
2016-01-05
gmungoc
Merge remote-tracking branch 'origin/features/JAL-1705_...
tree
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commitdiff
2015-12-22
gmungoc
JAL-653 AlignedCodonFrame collections changed from...
tree
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commitdiff
2015-12-22
gmungoc
JAL-653 GFF new/refactored helper classes
tree
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commitdiff
2015-12-22
gmungoc
JAL-653 AlignedCodonFrame internal refactor, merge...
tree
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commitdiff
2015-12-03
gmungoc
JAL-653 handle reverse strand mappings also
tree
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commitdiff
2015-12-02
gmungoc
JAL-1827 added overloaded method for convenience
tree
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commitdiff
2015-11-30
gmungoc
JAL-653 MapList constructor merges any contiguous ranges
tree
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commitdiff
2015-11-21
gmungoc
JAL-653 JAL-1968 FeaturesFile now handles Jalview or...
tree
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commitdiff
2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
tree
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commitdiff
2015-10-15
Jim Procter
Merge branch 'develop' into features/JAL-1705_ensembl
tree
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commitdiff
2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
tree
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commitdiff
2015-10-08
Jim Procter
Merge branch 'develop' into Release_2_9_0b1_Branch
tree
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commitdiff
2015-10-08
Jim Procter
JAL-1894 add licensing
tree
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commitdiff
2015-10-05
Jim Procter
Merge branch 'develop' into Release_2_9_0b1_Branch
tree
|
commitdiff
2015-09-24
gmungoc
JAL-1905 parse url including & correctly
tree
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commitdiff
2015-09-22
Jim Procter
Merge branch 'develop' into Release_2_9_0b1_Branch
tree
|
commitdiff
2015-09-16
gmungoc
JAL-1859 refactor duplicated code to new HttpUtils...
tree
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commitdiff
2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
tree
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commitdiff
2015-09-10
Jim Procter
JAL-1645 licencing for new files in src
tree
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commitdiff
2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
tree
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commitdiff
2015-07-08
gmungoc
JAL-1759 merge from develop
tree
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commitdiff
2015-07-06
tcofoegbu
JAL-1769 fixed headless execution mode and created...
tree
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commitdiff
2015-07-01
gmungoc
JAL-1802 handle slide sequences edits in split frame...
tree
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commitdiff
2015-07-01
gmungoc
JAL-1799 deduct more space for decorators on Windows
tree
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commitdiff
2015-06-28
Jim Procter
JAL-1705 refactored code for dbsource reggae validator...
tree
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commitdiff
2015-06-04
gmungoc
toString method added to aid viewing in the debugger
tree
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commitdiff
2015-05-20
gmungoc
JAL-1741 nucleotide-aware colour schemes applied to...
tree
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commitdiff
2015-05-05
gmungoc
JAL-1725 first version of Jetty server / chimera select...
tree
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commitdiff
2015-04-30
tcofoegbu
JAL-1717 updated the PDBEntry model and updated the...
tree
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commitdiff
2015-04-23
gmungoc
JAL-845 only 'follow' sort command in coding complement...
tree
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commitdiff
2015-04-13
gmungoc
JAL-1693 make exon alignment for get-xref splitframe...
tree
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commitdiff
2015-04-08
gmungoc
JAL-1691 applet SplitFrame scrolling; pull up of 5...
tree
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commitdiff
2015-04-07
gmungoc
JAL-1691 linked scrollling in split frame (Desktop)
tree
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commitdiff
2015-04-01
gmungoc
JAL-845 fixed start/end range of a mapped SequenceGroup
tree
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commitdiff
2015-03-26
gmungoc
Merge develop to Release_2_8_3_Branch
tree
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commitdiff
2015-03-06
Charles Ofoegbu
JAL-1668 added filtering and sorting capabilites
tree
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commitdiff
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
tree
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commitdiff
2015-03-06
Jim Procter
Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
tree
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commitdiff
2015-03-02
Charles Ofoegbu
house keeping
tree
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commitdiff
2014-12-22
Jim Procter
Merge: 497958b 68dcaa7
tree
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commitdiff
2014-12-15
Jim Procter
JAL-1620 version bump and release notes
tree
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commitdiff
2014-12-05
gmungoc
JAL-1609 refactored colour by sequence command, now...
tree
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commitdiff
2014-11-25
Charles Ofoegbu
JAL-1469 Added SVGOptions.java for lineart/text renderi...
tree
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commitdiff
2014-11-12
Charles Ofoegbu
house-keeping
tree
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commitdiff
2014-11-12
Charles Ofoegbu
Added support for SVG Export
tree
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commitdiff
2014-10-06
Jim Procter
JAL-1500 JAL-1265 patch to parse PDB database refs...
tree
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commitdiff
next