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JAL-3251 SequenceToSequenceMapping now SequenceMapping, MappingType++
[jalview.git] / src / jalview / util /
2018-10-25 gmungocJAL-3143 comma-delimited feature attributes for alleles, tree | commitdiff
2018-06-04 gmungocJAL-3019 correctly form toRange of 'traversed' MapList tree | commitdiff
2018-05-07 gmungocMerge branch 'releases/Release_2_10_4_Branch' into... tree | commitdiff
2018-05-04 gmungocJAL-2965 graduate brightness on z-axis from centre... tree | commitdiff
2018-04-30 gmungocJAL-2965 graduated sequence point colour from back... tree | commitdiff
2018-04-12 gmungocJAL-2223 don't add duplicate mappings to StructureSelec... tree | commitdiff
2018-03-07 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' into... tree | commitdiff
2018-02-06 kiramtMerge branch 'develop' into feature/JAL-2759 feature/JAL-2759 tree | commitdiff
2018-01-10 gmungocJAL-1793 update spike branch to latest tree | commitdiff
2017-12-08 gmungocJAL-2843 toStableString, fromString for Jalview feature... tree | commitdiff
2017-12-04 gmungocJAL-2808 JAL-2850 update spike build to latest tree | commitdiff
2017-12-01 gmungocJAL-2835 spike updated to latest (use specific SO term... tree | commitdiff
2017-11-28 gmungocJAL-2850 MapList.isToForwardStrand added tree | commitdiff
2017-11-24 gmungocJAL-2808 update spike to latest tree | commitdiff
2017-11-24 gmungocJAL-2808 refine FeatureMatcher interface and matcher... tree | commitdiff
2017-11-24 gmungocJAL-2808 don't cache i18n - MessageManager already... tree | commitdiff
2017-11-23 gmungocJAL-2808 update spike to latest (filter range tooltip... tree | commitdiff
2017-11-23 gmungocJAL-2808 refactor KeyedMatcher as FeatureMatcher with... tree | commitdiff
2017-11-23 gmungocJAL-2808 update spike to latest (filter range, Present... tree | commitdiff
2017-11-23 gmungocJAL-2808 added conditions Present, NotPresent as options tree | commitdiff
2017-11-22 gmungocJAL-2069 spike updated with latest (FeatureTypeSettings) tree | commitdiff
2017-11-22 gmungocMerge branch 'develop' into features/JAL-1793VCF tree | commitdiff
2017-11-17 Jim ProcterJAL-2698 source code licencing tree | commitdiff
2017-11-15 gmungocJAL-2835 spike updated with latest tree | commitdiff
2017-11-15 gmungocJAL- 2835 support filter on nested attribute keys tree | commitdiff
2017-11-08 kiramtMerge branch 'develop' into feature/JAL-2759 tree | commitdiff
2017-11-07 gmungocJAL-2069 update spike branch with latest tree | commitdiff
2017-11-07 gmungocMerge branch 'develop' into features/JAL-1793VCF tree | commitdiff
2017-11-07 gmungocJAL-2808 tweak to use Iterable for set of matchers tree | commitdiff
2017-11-06 gmungocJAL-2069 cache colours generated from labels tree | commitdiff
2017-11-06 gmungocJAL-2808 small tweak to getString to quote the pattern... tree | commitdiff
2017-11-02 gmungocJAL-2808 spike updated with latest tree | commitdiff
2017-11-02 gmungocJAL-2808 toString modified, tests corrected tree | commitdiff
2017-10-31 gmungocJAL-2808 revised util.matcher package, 2 filter conditi... tree | commitdiff
2017-10-31 kiramtJAL-2756 update for new EBI https link tree | commitdiff
2017-10-30 gmungocJAL-2808 classes to support filtering by attribute... tree | commitdiff
2017-10-27 gmungocJAL-1793 spike branch updated to latest tree | commitdiff
2017-10-26 gmungocMerge branch 'develop' into features/JAL-1793VCF tree | commitdiff
2017-10-26 gmungocJAL-2792 html table for Feature Details report tree | commitdiff
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2617mappedStopCodon' into develop tree | commitdiff
2017-10-05 gmungocJAL-2738 update spikes/mungo tree | commitdiff
2017-10-05 gmungocJAL-2738 helper method for convolving mappings tree | commitdiff
2017-10-05 gmungocJAL-2738 method to compound / traverse / convolve two... tree | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo tree | commitdiff
2017-10-02 gmungocMerge branch 'develop' into features/JAL-1793VCF tree | commitdiff
2017-09-29 Jim ProcterJAL-2745 update default EBI-eye search URL to HTTPS tree | commitdiff
2017-09-29 Jim ProcterJAL-2745 update default EBI-eye search URL to HTTPS feature/JAL-2745ebiHttps tree | commitdiff
2017-09-27 kiramtJAL-2674 Removing most calls to getHiddenColumnsCopy tree | commitdiff
2017-09-22 gmungocJAL-2738 extract utility method to MappingUtils tree | commitdiff
2017-09-15 Jim ProcterJAL-1625 ensure we don’t regress on JAL-20 - we always... patch/JAL-2732 tree | commitdiff
2017-09-15 Jim ProcterJAL-1625 javadoc tree | commitdiff
2017-09-01 gmungocJAL-2617 omit stop codon from synthesized CDS sequence tree | commitdiff
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList tree | commitdiff
2017-08-16 Jim ProcterJAL-2418 add GPL to main sources tree | commitdiff
2017-08-16 Jim ProcterJAL-2418 source formatting tree | commitdiff
2017-07-24 gmungocspike branch updated from latest features/JAL-2446 tree | commitdiff
2017-06-27 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-06-14 gmungocJAL-2598 Sequence.getSequence return a copy of the... tree | commitdiff
2017-06-09 gmungocJAL-2446 merged to spike branch tree | commitdiff
2017-06-08 kiramtJAL-2591 Refactor HiddenColumns to use ArrayList instea... tree | commitdiff
2017-06-08 kiramtJAL-2591 More HiddenColumns refactoring. Tests passing. tree | commitdiff
2017-06-07 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-06-07 kiramtJAL-2591 simplifying hidden columns usage tree | commitdiff
2017-06-02 kiramtJAL-2576 Proposed fix bug/JAL-2576 tree | commitdiff
2017-05-15 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-12 gmungocJAL-2480 java.util.RangeComparator renamed IntRangeComp... tree | commitdiff
2017-05-12 gmungocJAL-2480 renamed java.util.RangeComparator to IntRangeC... tree | commitdiff
2017-05-05 kiramtMerge remote-tracking branch tree | commitdiff
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges tree | commitdiff
2017-04-25 kiramtJAL-2388 Working hidden regions hide/show in desktop tree | commitdiff
2017-04-24 kiramtJAL-2388 Finished split of hidden columns and selected... tree | commitdiff
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection... tree | commitdiff
2017-03-24 gmungocJAL-838 move two callers off Comparison.PID and depreca... tree | commitdiff
2017-03-23 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-03-01 gmungocMerge branch 'features/JAL-2295setChimeraAttributes... tree | commitdiff
2017-02-28 gmungocJAL-838 Javadoc tidy tree | commitdiff
2017-02-20 gmungocJAL-2416 public constant for space gap character tree | commitdiff
2017-02-17 gmungocJAL-2413 extracted new method SetUtils.countDisjunction() tree | commitdiff
2017-02-08 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-01-26 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-01-26 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... tree | commitdiff
2017-01-26 gmungocMerge branch 'develop' into features/JAL-2360colourSche... tree | commitdiff
2017-01-25 gmungocJAL-2344 push Cache.getProperty("LAST_DIRECTORY") insid... tree | commitdiff
2017-01-20 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... tree | commitdiff
2017-01-20 gmungocJAL-2383 check for null, spelling tree | commitdiff
2017-01-20 gmungocMerge branch 'develop' into features/JAL-2360colourSche... tree | commitdiff
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2295setChimera... tree | commitdiff
2017-01-17 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... tree | commitdiff
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2360colourSche... tree | commitdiff
2017-01-10 gmungocJAL-2377 avoid infinite loop formatting 1.0E-310 tree | commitdiff
2017-01-10 kiramtJAL-2316 Separate label/db name in UrlProviders. Unit... tree | commitdiff
2017-01-06 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... tree | commitdiff
2017-01-06 gmungocJAL-2360 findColour() with no args removed from ColourS... tree | commitdiff
2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI tree | commitdiff
2016-12-16 kiramtJAL-2316 Added database name column to URL links table... tree | commitdiff
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum, tree | commitdiff
2016-12-13 kiramtMerge branch 'develop' into features/JAL-2316 tree | commitdiff
2016-12-09 kiramtJAL-2316 Unit test updates and associated minor changes... tree | commitdiff
2016-12-08 gmungocMerge branch 'develop' into features/JAL-2295setChimera... tree | commitdiff
2016-12-07 gmungocJAL-2344 handle null format, simplify JalviewFileChoose... tree | commitdiff
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