JAL-3251 SequenceToSequenceMapping now SequenceMapping, MappingType++
[jalview.git] / src / jalview / util /
2018-10-25 gmungocJAL-3143 comma-delimited feature attributes for alleles,
2018-06-04 gmungocJAL-3019 correctly form toRange of 'traversed' MapList
2018-05-07 gmungocMerge branch 'releases/Release_2_10_4_Branch' into...
2018-05-04 gmungocJAL-2965 graduate brightness on z-axis from centre...
2018-04-30 gmungocJAL-2965 graduated sequence point colour from back...
2018-04-12 gmungocJAL-2223 don't add duplicate mappings to StructureSelec...
2018-03-07 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' into...
2018-02-06 kiramtMerge branch 'develop' into feature/JAL-2759 feature/JAL-2759
2018-01-10 gmungocJAL-1793 update spike branch to latest
2017-12-08 gmungocJAL-2843 toStableString, fromString for Jalview feature...
2017-12-04 gmungocJAL-2808 JAL-2850 update spike build to latest
2017-12-01 gmungocJAL-2835 spike updated to latest (use specific SO term...
2017-11-28 gmungocJAL-2850 MapList.isToForwardStrand added
2017-11-24 gmungocJAL-2808 update spike to latest
2017-11-24 gmungocJAL-2808 refine FeatureMatcher interface and matcher...
2017-11-24 gmungocJAL-2808 don't cache i18n - MessageManager already...
2017-11-23 gmungocJAL-2808 update spike to latest (filter range tooltip...
2017-11-23 gmungocJAL-2808 refactor KeyedMatcher as FeatureMatcher with...
2017-11-23 gmungocJAL-2808 update spike to latest (filter range, Present...
2017-11-23 gmungocJAL-2808 added conditions Present, NotPresent as options
2017-11-22 gmungocJAL-2069 spike updated with latest (FeatureTypeSettings)
2017-11-22 gmungocMerge branch 'develop' into features/JAL-1793VCF
2017-11-17 Jim ProcterJAL-2698 source code licencing
2017-11-15 gmungocJAL-2835 spike updated with latest
2017-11-15 gmungocJAL- 2835 support filter on nested attribute keys
2017-11-08 kiramtMerge branch 'develop' into feature/JAL-2759
2017-11-07 gmungocJAL-2069 update spike branch with latest
2017-11-07 gmungocMerge branch 'develop' into features/JAL-1793VCF
2017-11-07 gmungocJAL-2808 tweak to use Iterable for set of matchers
2017-11-06 gmungocJAL-2069 cache colours generated from labels
2017-11-06 gmungocJAL-2808 small tweak to getString to quote the pattern...
2017-11-02 gmungocJAL-2808 spike updated with latest
2017-11-02 gmungocJAL-2808 toString modified, tests corrected
2017-10-31 gmungocJAL-2808 revised util.matcher package, 2 filter conditi...
2017-10-31 kiramtJAL-2756 update for new EBI https link
2017-10-30 gmungocJAL-2808 classes to support filtering by attribute...
2017-10-27 gmungocJAL-1793 spike branch updated to latest
2017-10-26 gmungocMerge branch 'develop' into features/JAL-1793VCF
2017-10-26 gmungocJAL-2792 html table for Feature Details report
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2617mappedStopCodon' into develop
2017-10-05 gmungocJAL-2738 update spikes/mungo
2017-10-05 gmungocJAL-2738 helper method for convolving mappings
2017-10-05 gmungocJAL-2738 method to compound / traverse / convolve two...
2017-10-03 gmungocJAL-2738 copy to spikes/mungo
2017-10-02 gmungocMerge branch 'develop' into features/JAL-1793VCF
2017-09-29 Jim ProcterJAL-2745 update default EBI-eye search URL to HTTPS
2017-09-29 Jim ProcterJAL-2745 update default EBI-eye search URL to HTTPS feature/JAL-2745ebiHttps
2017-09-27 kiramtJAL-2674 Removing most calls to getHiddenColumnsCopy
2017-09-22 gmungocJAL-2738 extract utility method to MappingUtils
2017-09-15 Jim ProcterJAL-1625 ensure we don’t regress on JAL-20 - we always... patch/JAL-2732
2017-09-15 Jim ProcterJAL-1625 javadoc
2017-09-01 gmungocJAL-2617 omit stop codon from synthesized CDS sequence
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList
2017-08-16 Jim ProcterJAL-2418 add GPL to main sources
2017-08-16 Jim ProcterJAL-2418 source formatting
2017-07-24 gmungocspike branch updated from latest features/JAL-2446
2017-06-27 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-06-14 gmungocJAL-2598 Sequence.getSequence return a copy of the...
2017-06-09 gmungocJAL-2446 merged to spike branch
2017-06-08 kiramtJAL-2591 Refactor HiddenColumns to use ArrayList instea...
2017-06-08 kiramtJAL-2591 More HiddenColumns refactoring. Tests passing.
2017-06-07 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-06-07 kiramtJAL-2591 simplifying hidden columns usage
2017-06-02 kiramtJAL-2576 Proposed fix bug/JAL-2576
2017-05-15 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-05-12 gmungocJAL-2480 java.util.RangeComparator renamed IntRangeComp...
2017-05-12 gmungocJAL-2480 renamed java.util.RangeComparator to IntRangeC...
2017-05-05 kiramtMerge remote-tracking branch
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges
2017-04-25 kiramtJAL-2388 Working hidden regions hide/show in desktop
2017-04-24 kiramtJAL-2388 Finished split of hidden columns and selected...
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection...
2017-03-24 gmungocJAL-838 move two callers off Comparison.PID and depreca...
2017-03-23 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-03-01 gmungocMerge branch 'features/JAL-2295setChimeraAttributes...
2017-02-28 gmungocJAL-838 Javadoc tidy
2017-02-20 gmungocJAL-2416 public constant for space gap character
2017-02-17 gmungocJAL-2413 extracted new method SetUtils.countDisjunction()
2017-02-08 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-01-26 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-01-26 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit...
2017-01-26 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-25 gmungocJAL-2344 push Cache.getProperty("LAST_DIRECTORY") insid...
2017-01-20 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit...
2017-01-20 gmungocJAL-2383 check for null, spelling
2017-01-20 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2295setChimera...
2017-01-17 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit...
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-10 gmungocJAL-2377 avoid infinite loop formatting 1.0E-310
2017-01-10 kiramtJAL-2316 Separate label/db name in UrlProviders. Unit...
2017-01-06 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit...
2017-01-06 gmungocJAL-2360 findColour() with no args removed from ColourS...
2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI
2016-12-16 kiramtJAL-2316 Added database name column to URL links table...
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum,
2016-12-13 kiramtMerge branch 'develop' into features/JAL-2316
2016-12-09 kiramtJAL-2316 Unit test updates and associated minor changes...
2016-12-08 gmungocMerge branch 'develop' into features/JAL-2295setChimera...
2016-12-07 gmungocJAL-2344 handle null format, simplify JalviewFileChoose...
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