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JAL-4366 hacked in a 1:1 mapping
[jalview.git]
/
src
/
jalview
/
ws
/
dbsources
/
2018-06-27
hansonr
JAL-3032 just the changes pulled already
tree
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commitdiff
2018-06-26
Jim Procter
JAL-3035 - jalview-das is no more !
tree
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commitdiff
2018-06-07
gmungoc
JAL-2920 wrap description in <html/> if it includes...
tree
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commitdiff
2018-06-06
Jim Procter
JAL-2920 revised TODO for JAL-3025
bug/JAL-2920_uniprotvariantfeature
tree
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commitdiff
2018-06-06
Jim Procter
JAL-2920 don’t output variant/original sequence as...
tree
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commitdiff
2018-06-06
Jim Procter
JAL-1920 JAL-3017 use newline not <br/> in description...
tree
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commitdiff
2018-06-04
Jim Procter
JAL-3017 parse multiple variant elements for uniprot...
tree
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commitdiff
2018-05-21
gmungoc
JAL-2920 use HGVS notation for protein variant feature
tree
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commitdiff
2018-03-08
gmungoc
JAL-2885 tests updated for code changes
tree
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commitdiff
2018-02-23
Jim Procter
JAL-2885 xfam https
features/JAL-2885UniprotHttps
tree
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commitdiff
2018-02-23
Jim Procter
JAL-2885 XFAM_DOMAIN->XFAM_BASEURL
tree
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commitdiff
2018-02-23
Jim Procter
JAL-2885 renamed base URL getter from getDomain..
tree
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commitdiff
2018-01-16
gmungoc
JAL-2885 uniprot now https, uniprot/ensembl/pfam/xfam...
tree
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commitdiff
2017-11-22
gmungoc
JAL-2069 spike updated with latest (FeatureTypeSettings)
tree
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commitdiff
2017-11-13
Jim Procter
JAL-2758 remove configurable behaviour - Uniprot sequen...
tree
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commitdiff
2017-11-13
Jim Procter
JAL-2758 typo
tree
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commitdiff
2017-10-06
Jim Procter
JAL-2758 flag and tests for omitting uniprot accession...
features/JAL-2758_shorteruniprot
tree
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commitdiff
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
tree
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commitdiff
2017-09-29
Jim Procter
JAL-2748 formatting
tree
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commitdiff
2017-09-29
Jim Procter
JAL-2745 JAL-2748 direct download of XML from uniprot.org
tree
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commitdiff
2017-09-29
Jim Procter
JAL-2748 formatting
tree
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commitdiff
2017-09-29
Jim Procter
JAL-2745 JAL-2748 direct download of XML from uniprot.org
tree
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commitdiff
2017-09-03
Jim Procter
Merge branch 'documentation/JAL-2675_release2102b1...
tree
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commitdiff
2017-08-22
Jim Procter
JAL-1551 formatting
tree
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commitdiff
2017-08-21
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
features/JAL-2446NCList
tree
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commitdiff
2017-08-16
Jim Procter
JAL-2418 source formatting
tree
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commitdiff
2017-08-10
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-08-09
Jim Procter
JAL-2426 Rfam download suffix
tree
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commitdiff
2017-08-09
Jim Procter
JAL-2426 JAL-1270 report Xfam download URL used if...
tree
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commitdiff
2017-08-09
Jim Procter
JAL-2425 raw stockholm download URLs
tree
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commitdiff
2017-08-09
Jim Procter
JAL-2425 remove overloaded getSequenceRecords method...
tree
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commitdiff
2017-06-09
gmungoc
JAL-2446 merged to spike branch
tree
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commitdiff
2017-06-09
Jim Procter
Merge branch 'develop' into features/JAL-2349_matrixvis
tree
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commitdiff
2017-05-25
gmungoc
JAL-2050 make SequenceFeature.score final, adjust const...
tree
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commitdiff
2017-05-24
gmungoc
JAL-2506 relocate Uniprot binding classes, bind to...
tree
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commitdiff
2017-05-16
gmungoc
JAL-2505 set SequenceFeature group in constructor
tree
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commitdiff
2017-03-22
kiramt
JAL-2461 Removed DAS error stack trace, updated message
tree
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commitdiff
2016-11-30
gmungoc
JAL-2344 use ".cif" for saved mmCIF file (and refactor...
tree
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commitdiff
2016-11-29
gmungoc
JAL-2344 corrected conversion of Type enum to FileFormat
features/JAL-2344FileFormatI
tree
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commitdiff
2016-11-25
gmungoc
Merge branch 'develop' into trialMerge
tree
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commitdiff
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
tree
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commitdiff
2016-10-24
Jim Procter
Merge branch 'releases/Release_2_10_0_Branch'
tree
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commitdiff
2016-10-14
gmungoc
Merge branch 'releases/Release_2_10_Branch' into task...
task/JAL-2196pdbeProperties
tree
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commitdiff
2016-10-06
gmungoc
JAL-2254 map error text in root node of EMBL XML response
tree
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commitdiff
2016-10-06
gmungoc
Merge branch 'develop' into task/JAL-2196pdbeProperties
tree
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commitdiff
2016-10-06
gmungoc
JAL-2245 checks for null added (in case EMBL fetch...
tree
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commitdiff
2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
tree
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commitdiff
2016-10-05
Jim Procter
JAL-2189 source formatting
tree
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commitdiff
2016-10-05
gmungoc
Merge branch 'develop' into task/JAL-2196pdbeProperties
tree
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commitdiff
2016-10-05
Jim Procter
Revert "JAL-2245 Castor mapping and code changes for...
tree
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commitdiff
2016-10-04
gmungoc
Merge branch 'bug/JAL-2245enaXmlChange' into develop
tree
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commitdiff
2016-10-04
gmungoc
JAL-2245 Castor mapping and code changes for change...
bug/JAL-2245enaXmlChange
tree
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commitdiff
2016-10-03
Jim Procter
JAL-2210 use addDBRef to ensure normalisation (just...
tree
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commitdiff
2016-10-03
Jim Procter
JAL-2210 need to add both transcript and product, and...
tree
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commitdiff
2016-10-03
Jim Procter
JAL-2210 JAL-2232 remove version number from ENACDS...
tree
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commitdiff
2016-10-02
Jim Procter
JAL-2210 remove ENSEMBL from protein DB list:
tree
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commitdiff
2016-10-01
Jim Procter
Merge branch 'develop' into bug/JAL-2210_ensembl_unipro...
tree
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commitdiff
2016-09-29
gmungoc
JAL-2213 code warnings addressed (typed collections...
tree
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commitdiff
2016-09-28
Jim Procter
JAL-2232 extract EMBLCDS refs from EMBL refs on Uniprot...
tree
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commitdiff
2016-09-07
Jim Procter
JAL-282 TODO - Sequence name from PDB had redundant...
tree
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commitdiff
2016-08-30
gmungoc
Merge branch 'develop' into features/filetypeEnum
tree
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commitdiff
2016-08-24
Jim Procter
JAL-2106 removed setSourceDBRef, refactor getSourceDBRe...
tree
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commitdiff
2016-07-26
tcofoegbu
JAL-2157 bugfix for issues from enum refactoring
tree
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commitdiff
2016-07-21
Jim Procter
Merge branch 'apifix/JAL-1926_JAL-2106' into develop
tree
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commitdiff
2016-07-20
Jim Procter
JAL-1926 JAL-2106 use enum for ‘DEFAULT_STRUCTURE_FORMA...
tree
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commitdiff
2016-07-19
tcofoegbu
JAL-1919 set default structure file format to mmCIF...
tree
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commitdiff
2016-07-12
gmungoc
FileFormat enum wip changes
tree
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commitdiff
2016-07-11
gmungoc
file format enum wip changes
tree
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commitdiff
2016-07-08
tcofoegbu
JAL-1919 Fixed failing tests, enabled HETATM processing...
tree
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commitdiff
2016-06-30
tcofoegbu
JAL-1919 updated PDBSequenceFetcherTest and JMol parser...
tree
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commitdiff
2016-06-20
gmungoc
JAL-1667 updated PDB example query to a valid id (witho...
tree
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commitdiff
2016-05-31
Jim Procter
Merge branch 'develop' into features/JAL-2113_emblXml1.2
tree
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commitdiff
2016-05-27
gmungoc
JAL-1911 correct typo in field name
tree
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commitdiff
2016-05-26
tcofoegbu
JAL-1911 bugfix - do not save i18n text in preference...
tree
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commitdiff
2016-05-23
gmungoc
JAL-2113 EBIFetchClient refactor / unit tests / remove...
tree
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commitdiff
2016-05-20
gmungoc
JAL-2113 embl_mapping.xml and code updated for EMBL...
tree
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commitdiff
2016-04-26
Jim Procter
JAL-2079 fix broken cherry-pick conflict merge
tree
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commitdiff
2016-04-26
Jim Procter
JAL-2079 use new service to retrieve Rfam Seed alignment
tree
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commitdiff
2016-04-26
Jim Procter
JAL-2079 update URL for RFAM and PFAM sources
tree
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commitdiff
2016-04-26
Jim Procter
JAL-2079 allow prefix+<XFAMID>+suffix type URL signature
tree
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commitdiff
2016-04-19
tcofoegbu
JAL-2071 architectural improvement for Plugable Free...
tree
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commitdiff
2016-03-24
tcofoegbu
JAL-1919 set DEFUALT_STRUCTURE_FORMAT to PDB
tree
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commitdiff
2016-03-23
tcofoegbu
JAL-2009 added programmatic custom feature setting...
tree
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commitdiff
2016-03-22
tcofoegbu
resolve conflict with Mungo's merge
tree
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commitdiff
2016-03-22
tcofoegbu
JAL-1919 code improvement to make PDB sequence fetcher...
tree
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commitdiff
2016-03-21
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-03-21
tcofoegbu
develop merge
features/JAL-1919_mmCIF-Support
tree
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commitdiff
2016-03-21
gmungoc
JAL-2029 many-to-many EnsemblCDS-to-Uniprot mappings
tree
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commitdiff
2016-03-21
tcofoegbu
JAL-2028 added improvement for preconfigured ordering...
tree
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commitdiff
2016-03-21
tcofoegbu
develop merge
tree
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commitdiff
2016-03-16
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-03-16
tcofoegbu
JAL-2028 improvment to the displayed column customisation
tree
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commitdiff
2016-03-15
gmungoc
Merge branch 'develop' into features/JAL-653_JAL-1766_h...
mungo_develop
tree
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commitdiff
2016-03-11
tcofoegbu
JAL-2026 Bug fix for best quality filter
tree
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commitdiff
2016-03-11
gmungoc
Merge branch 'develop' into features/JAL-653_JAL-1766_h...
tree
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commitdiff
2016-03-11
gmungoc
JAL-1705 refactoring etc for fetching Ensembl --> Uniprot
tree
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commitdiff
2016-03-10
tcofoegbu
JAL-2024 code to enforce case insensitivity for manual...
tree
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commitdiff
2016-02-25
gmungoc
Merge branch 'develop' into features/JAL-653_JAL-1766_h...
tree
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commitdiff
2016-02-23
tcofoegbu
JAL-1720 renamed Structure Chooser filters according...
tree
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commitdiff
2016-02-22
tcofoegbu
JAL-1720 JAL-2002 improvement for 'uniprot coverage...
tree
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commitdiff
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