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Merge branch 'Release_2_8_2_Branch' of https://source.jalview.org/git/jalview.git...
[jalview.git] / src / jalview / ws / dbsources /
2014-10-06 Jim ProcterJAL-654 remove any annotation rows for chain specific... tree | commitdiff
2014-09-23 darolmarJAL-1355 tree | commitdiff
2014-06-06 Jim ProcterJAL-1517 source formatting tree | commitdiff
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 tree | commitdiff
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2 tree | commitdiff
2014-06-05 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch tree | commitdiff
2014-05-22 Jim ProcterJAL-1503 update version in GPL header tree | commitdiff
2014-02-18 Jim ProcterMerge branch 'JAL-1445' into develop tree | commitdiff
2014-01-29 Jim ProcterJAL-1432 updated copyright notices tree | commitdiff
2014-01-07 Jim ProcterMerge branch 'fix_JAL-1423' into develop tree | commitdiff
2014-01-07 Jim ProcterJAL-1423 - console error reporting and graceful handlin... tree | commitdiff
2013-06-18 Jim ProcterJAL-674 - avoid java.util.ConcurrentModificationExcepti... tree | commitdiff
2013-01-20 jprocterMerge branch 'Dbfetch_hotfix-JAL-1238' into develop tree | commitdiff
2013-01-18 jprocterJAL-1238 method to test if DAS source is a primary... tree | commitdiff
2013-01-18 jprocterJAL-1238 tier index indicating distance of a source... tree | commitdiff
2012-11-17 jprocterreturn alignmentI created from pdbfile class directly... tree | commitdiff
2012-11-08 jproctertidy imports tree | commitdiff
2012-10-22 jprocterJalview 2.8 Source Header tree | commitdiff
2012-10-04 jprocterMerge branch 'develop' into Release_2_8_Branch tree | commitdiff
2012-10-04 jprocteravoid importing the mapping every time we parse a unipr... tree | commitdiff
2012-10-03 jprocterformatting tree | commitdiff
2012-09-02 jprocterJAL-1062 JAL-659 correct start position for retrieved... tree | commitdiff
2012-09-02 jprocterJAL-1062 use matching region or first section of sequen... tree | commitdiff
2012-05-14 jprocterJAL-1095 - todo tree | commitdiff
2012-05-11 jprocterJAL-972 workaround for working out source URL for pre... tree | commitdiff
2012-05-11 jprocterformatting tree | commitdiff
2012-05-11 jprocterJAL-972 migration from dasobert to jdas registry URLs tree | commitdiff
2012-05-11 jprocterJAL-972 local do not have a coordsys element with sourc... tree | commitdiff
2012-05-11 jprocterJAL-424 TODO: new method signature for local source... tree | commitdiff
2012-05-10 jprocterJAL-1085 - ensure sequence fetching client waits around... tree | commitdiff
2012-05-10 jprocterJAL-972 JAL-1084 propagate reference to local authentic... tree | commitdiff
2012-05-10 jprocterJAL-1083 - graceful failover to single ID query mode... tree | commitdiff
2012-05-10 jprocterformatting tree | commitdiff
2012-05-10 jprocterJAL-1083 graceful failover to one ID per sequences... tree | commitdiff
2012-04-24 jprocterJAL-972 correct das registry default URL (JDAS automati... tree | commitdiff
2012-04-24 jprocterJAL-972 - test to distinguish sources based on age... tree | commitdiff
2012-04-24 jprocterJAL-1074 fix - missing tag indicating alignments are... tree | commitdiff
2012-04-20 jprocterJAL-972, JAL-1072 new default dasregistry.org registry... tree | commitdiff
2012-04-20 jprocterJAL-972 - correct name when constructing db-source... tree | commitdiff
2012-03-30 jprocterJAL-1062 - recognise and split off the range qualifier... tree | commitdiff
2012-03-30 jprocterMerge branch 'JAL-972-dasobert-to-jdas' into JAL-972... tree | commitdiff
2012-03-30 jprocterlogic bug tree | commitdiff
2012-03-01 jprocterdebug local source management buttons and formatting tree | commitdiff
2012-03-01 jprocterrevised version of Jdas with simpler connectionProperty... tree | commitdiff
2012-02-29 jprocterremoved excess imports tree | commitdiff
2012-02-29 jprocterupdated das sequence source for jdas client and refacto... tree | commitdiff
2012-02-29 jprocterjalview das registry and source api and jdas specific... tree | commitdiff
2012-02-29 jprocterjdas doesn't need a listener for das sequence retrieval... tree | commitdiff
2012-02-13 jprocterremove dead imports tree | commitdiff
2011-10-10 jprocterupdate author list in license for (JAL-826) tree | commitdiff
2011-10-04 jprocterMerge remote-tracking branch 'remotes/origin/2_5_1_rna_... tree | commitdiff
2011-09-27 jprocterapply version 2.7 copyright tree | commitdiff
2011-07-25 janengelhardt'Add Rfam database sequence retrieval' merged; JAL-580 tree | commitdiff
2011-07-25 janengelhardtStart merging of Laurens Code tree | commitdiff
2011-07-08 jprocteropen each query result from an alignment datasource... tree | commitdiff
2010-09-23 jprocterapply jalview code style tree | commitdiff
2010-09-23 jprocterJalview 2.6 source licence tree | commitdiff
2010-04-30 jprocterjalview 2.5 release banner tree | commitdiff
2009-06-19 jprocterregex validator for uniprot tree | commitdiff
2009-06-12 jproctermore ID validation tree | commitdiff
2009-06-08 jprocterapply gpl development license tree | commitdiff
2008-12-19 jprocterwsdbfetch parameter change again (uniprotkb is dbname... tree | commitdiff
2008-12-04 jprocterminimise exceptions for bad uniprot ids tree | commitdiff
2008-11-04 jprocterimplemented embl validation properly tree | commitdiff
2008-11-04 jprocterimplemented embl validation properly tree | commitdiff
2008-09-04 jproctermerge from 2_4_Release branch tree | commitdiff
2008-08-26 jprocterpdb xrefs added as dbrefs and as PDB file links tree | commitdiff
2008-08-15 jprocterxrefs retrieved from Uniprot tree | commitdiff
2008-08-04 jprocterpfam seed and full alignment retrieval and nicer orderi... tree | commitdiff
2008-08-01 jprocterupdated jalview version of dasobert 1.53e client and... tree | commitdiff
2008-07-31 jprocterquick fix for the new uniprot name schema - description... tree | commitdiff
2008-05-26 jprocterUniprot is not actually a multi-acc capable source... tree | commitdiff
2008-02-22 jprocterexplicit quote of chaincode in errror message tree | commitdiff
2007-12-21 jprocteruniprotxml format comment (ebi changed service parameter) tree | commitdiff
2007-12-21 jproctersequence db fetcher and db reference validation/annotat... tree | commitdiff
2007-11-16 jproctertypo tree | commitdiff
2007-11-16 jprocterrefactored ebi soap client and AbstractSequenceFetcher... tree | commitdiff
2007-11-16 jprocterrefactor abstract sequence fetching and DBSource machin... tree | commitdiff
2007-09-29 jprocteruse pdb refsource string tree | commitdiff
2007-09-10 jprocterensure dbrefs are added to dataset sequence. tree | commitdiff
2007-08-24 jprocterremove null pointer exception when embl file is not... tree | commitdiff
2007-07-13 jprocternew DBRef management and generalised source and entry... tree | commitdiff