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JAL-3829 ensure nulls are not wildcards when retrieving annotation by calcId/label...
[jalview.git] / src / jalview / ws /
2016-11-03 tcofoegbuJAL-2312 Bug fix for repeated mapping generation from... tree | commitdiff
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch tree | commitdiff
2016-10-24 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch' tree | commitdiff
2016-10-24 Jim ProcterJAL-2197 renamed Jnet to Jared in help, web services... tree | commitdiff
2016-10-14 gmungocMerge branch 'releases/Release_2_10_Branch' into task... task/JAL-2196pdbeProperties tree | commitdiff
2016-10-13 gmungocMerge branch 'releases/Release_2_10_Branch' into develop tree | commitdiff
2016-10-13 gmungocJAL-1479 revise warning message to suit all contexts bug/JAL-2044jmolModelBinding tree | commitdiff
2016-10-11 gmungocMerge branch 'releases/Release_2_10_Branch' into develop tree | commitdiff
2016-10-11 gmungocJAL-1479 small tidy of error message when Sifts mapping... tree | commitdiff
2016-10-06 gmungocJAL-2254 map error text in root node of EMBL XML response tree | commitdiff
2016-10-06 gmungocMerge branch 'develop' into task/JAL-2196pdbeProperties tree | commitdiff
2016-10-06 gmungocJAL-2245 checks for null added (in case EMBL fetch... tree | commitdiff
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... tree | commitdiff
2016-10-05 Jim ProcterJAL-2189 apply license tree | commitdiff
2016-10-05 Jim ProcterJAL-2189 source formatting tree | commitdiff
2016-10-05 gmungocMerge branch 'develop' into task/JAL-2196pdbeProperties tree | commitdiff
2016-10-05 Jim ProcterRevert "JAL-2245 Castor mapping and code changes for... tree | commitdiff
2016-10-04 gmungocMerge branch 'bug/JAL-2245enaXmlChange' into develop tree | commitdiff
2016-10-04 gmungocJAL-2245 Castor mapping and code changes for change... bug/JAL-2245enaXmlChange tree | commitdiff
2016-10-03 Jim ProcterJAL-2210 use addDBRef to ensure normalisation (just... tree | commitdiff
2016-10-03 Jim ProcterJAL-2210 need to add both transcript and product, and... tree | commitdiff
2016-10-03 Jim ProcterJAL-2210 JAL-2232 remove version number from ENACDS... tree | commitdiff
2016-10-02 Jim ProcterJAL-2210 remove ENSEMBL from protein DB list: tree | commitdiff
2016-10-01 Jim ProcterMerge branch 'develop' into bug/JAL-2210_ensembl_unipro... tree | commitdiff
2016-09-29 gmungocJAL-1856 better warning messages for sequence matching... features/JAL-1856dbRefFetcherMessages tree | commitdiff
2016-09-29 gmungocJAL-2213 code warnings addressed (typed collections... tree | commitdiff
2016-09-29 gmungocJAL-2213 removed PDB from db sources list; also code... tree | commitdiff
2016-09-28 Jim ProcterJAL-2232 extract EMBLCDS refs from EMBL refs on Uniprot... tree | commitdiff
2016-09-07 Jim ProcterJAL-282 TODO - Sequence name from PDB had redundant... tree | commitdiff
2016-09-06 gmungocJAL-2106 DBRefEntry.isPrimary() renamed isPrimaryCandid... tree | commitdiff
2016-08-31 Jim ProcterJAL-1926 JAL-2106 source DB refs come from SequenceI... tree | commitdiff
2016-08-31 Jim ProcterJAL-1926 JAL-2106 resolve source DB refs using canonica... tree | commitdiff
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum tree | commitdiff
2016-08-26 Jim ProcterJAL-2154 patch regression on DbRefFetcher due to PDB... tree | commitdiff
2016-08-25 Jim ProcterMerge branch 'develop' into refactor/JAL-2106_sourceDbR... tree | commitdiff
2016-08-25 gmungocJAL-2178 remove duplicate Uniprot db source tree | commitdiff
2016-08-24 Jim ProcterJAL-2106 tidy up and comments for DBRefFetcher tree | commitdiff
2016-08-24 Jim ProcterJAL-2106 removed setSourceDBRef, refactor getSourceDBRe... tree | commitdiff
2016-08-24 gmungocJAL-1355 correct 'thereshold' to 'threshold' in message... tree | commitdiff
2016-07-26 tcofoegbuJAL-2157 bugfix for issues from enum refactoring tree | commitdiff
2016-07-21 Jim ProcterMerge branch 'apifix/JAL-1926_JAL-2106' into develop tree | commitdiff
2016-07-20 Jim ProcterJAL-1926 JAL-2106 use enum for ‘DEFAULT_STRUCTURE_FORMA... tree | commitdiff
2016-07-19 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-07-19 tcofoegbuJAL-1919 set default structure file format to mmCIF... tree | commitdiff
2016-07-18 Jim ProcterMerge branch 'features/JAL-2068groovyAnnotationWorker... tree | commitdiff
2016-07-18 gmungocfileFormat enum wip changes tree | commitdiff
2016-07-12 gmungocFileFormat enum wip changes tree | commitdiff
2016-07-11 gmungocfile format enum wip changes tree | commitdiff
2016-07-09 gmungocMerge branch 'develop' into features/JAL-2110_crossRefD... features/JAL-2110_crossRefDuplications tree | commitdiff
2016-07-08 tcofoegbuJAL-1919 Fixed failing tests, enabled HETATM processing... tree | commitdiff
2016-07-01 gmungocJAL-2110 bug fixing and tidying for get cross-refs tree | commitdiff
2016-06-30 gmungocMerge branch 'develop' into features/JAL-2110_crossRefD... tree | commitdiff
2016-06-30 tcofoegbuJAL-1919 updated PDBSequenceFetcherTest and JMol parser... tree | commitdiff
2016-06-29 gmungocMerge branch 'develop' into features/JAL-2110_crossRefD... tree | commitdiff
2016-06-29 tcofoegbuJAL-1479 improved Sifts PID calculation for determining... tree | commitdiff
2016-06-29 gmungocMerge branch 'develop' into features/JAL-2110_crossRefD... tree | commitdiff
2016-06-28 tcofoegbuJAL-1479 minor refactor and housekeeping tree | commitdiff
2016-06-28 tcofoegbuJAL-1479 improved SiftsClient test coverage and impleme... tree | commitdiff
2016-06-21 Jim ProcterMerge branch 'features/JAL-2110_crossRefDuplications... tree | commitdiff
2016-06-21 Jim ProcterMerge branch 'features/JAL-1956_featureStyles' into... tree | commitdiff
2016-06-20 Jim ProcterMerge branch 'develop' into features/JAL-2068groovyAnno... features/JAL-2068groovyAnnotationWorker tree | commitdiff
2016-06-20 gmungocJAL-1667 updated PDB example query to a valid id (witho... tree | commitdiff
2016-06-20 Jim ProcterJAL-2110 List now used for AlignCodonFrame references tree | commitdiff
2016-06-19 Jim ProcterJAL-2110 JAL-2131 JAL-1765 remove reference to jalview... tree | commitdiff
2016-06-14 gmungocMerge branch 'develop' into features/JAL-2110_crossRefD... tree | commitdiff
2016-06-10 tcofoegbuJAL-1479 updated SIFTS FTP download URL, added improvem... tree | commitdiff
2016-06-09 gmungocMerge branch 'develop' into features/JAL-2110_makeSense... tree | commitdiff
2016-06-08 tcofoegbuJAL-1479 JAL- Fix to eradicate duplicate mapping output... tree | commitdiff
2016-06-03 gmungocJAL-2110 random stuff tree | commitdiff
2016-06-02 gmungocMerge branch 'develop' into features/JAL-2110_makeSense... tree | commitdiff
2016-05-31 Jim ProcterMerge branch 'develop' into features/JAL-2113_emblXml1.2 tree | commitdiff
2016-05-27 gmungocJAL-1942 small tidy (formatting, explict imports, typed... tree | commitdiff
2016-05-27 gmungocJAL-1911 correct typo in field name tree | commitdiff
2016-05-26 tcofoegbuJAL-1911 bugfix - do not save i18n text in preference... tree | commitdiff
2016-05-23 gmungocJAL-2113 tidy variable naming / javadoc tree | commitdiff
2016-05-23 gmungocJAL-2113 EBIFetchClient refactor / unit tests / remove... tree | commitdiff
2016-05-20 gmungocJAL-2113 embl_mapping.xml and code updated for EMBL... tree | commitdiff
2016-05-20 gmungocJAL-2110 unit tests for and minor refactoring of CrossRef tree | commitdiff
2016-05-12 gmungocJAL-2104 format tooltips to wrap correctly tree | commitdiff
2016-05-10 gmungocMerge branch 'develop' into features/JAL-1956_featureStyles tree | commitdiff
2016-04-26 Jim ProcterJAL-2079 fix broken cherry-pick conflict merge tree | commitdiff
2016-04-26 Jim ProcterJAL-2079 use new service to retrieve Rfam Seed alignment tree | commitdiff
2016-04-26 Jim ProcterJAL-2079 disable RFAM(Full) source until we can retriev... tree | commitdiff
2016-04-26 Jim ProcterJAL-2079 update URL for RFAM and PFAM sources tree | commitdiff
2016-04-26 Jim ProcterJAL-2079 allow prefix+<XFAMID>+suffix type URL signature tree | commitdiff
2016-04-26 gmungocJAL-2068 deleting user-defined annotation removes the... tree | commitdiff
2016-04-25 tcofoegbudevelop merge tree | commitdiff
2016-04-22 gmungocJAL-2068 redundant implements clauses removed tree | commitdiff
2016-04-19 tcofoegbuJAL-2071 architectural improvement for Plugable Free... tree | commitdiff
2016-04-13 tcofoegbuJAL-2047 delay to allow table model initilisation to... tree | commitdiff
2016-04-06 tcofoegbumerge tree | commitdiff
2016-04-06 tcofoegbuJAL-2047 JAL-1919 fixed empty tooltip text when a cell... tree | commitdiff
2016-04-01 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... tree | commitdiff
2016-04-01 tcofoegbuJAL-2045 JAL-2047 improvement for sorting PDB quality... tree | commitdiff
2016-03-28 gmungocJAL-1705 Javadoc / debug output tweaks tree | commitdiff
2016-03-28 gmungocJAL-2016 push getFeatureColourScheme(source) into Seque... tree | commitdiff
2016-03-28 gmungocJAL-2036 update AlignFrame menus when dbreffetcher... tree | commitdiff
2016-03-24 tcofoegbuJAL-1479 Commented out debug sysout's for SiftsClient tree | commitdiff
2016-03-24 tcofoegbuJAL-1919 set DEFUALT_STRUCTURE_FORMAT to PDB tree | commitdiff
2016-03-23 tcofoegbumerge tree | commitdiff
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