JAL-1705 code tidy/comment only
[jalview.git] / src / jalview / ws /
2016-03-11 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h...
2016-03-11 gmungocJAL-1705 refactoring etc for fetching Ensembl --> Uniprot
2016-03-10 tcofoegbuJAL-2024 code to enforce case insensitivity for manual...
2016-03-03 tcofoegbuJAL-1919 updated unicode mapping symbol
2016-03-03 gmungocJAL-1705 include stop codons in derived CDS; support...
2016-02-25 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h...
2016-02-23 tcofoegbuJAL-1720 renamed Structure Chooser filters according...
2016-02-22 tcofoegbuJAL-1720 JAL-2002 improvement for 'uniprot coverage...
2016-02-22 gmungocJAL-1705 first pass at applying preset feature colourin...
2016-02-20 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h...
2016-02-19 tcofoegbuJAL-2009 Codes to enable storing inserted residues...
2016-02-12 gmungocJAL-1270 remove trailing space + test
2016-02-12 gmungocJAL-1705 various refactoring towards Uniprot-to-Ensembl...
2016-02-04 gmungocJAL-1705 temporary variable to aid inspection in debugger
2016-02-01 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h...
2016-01-28 gmungocMerge branch 'develop' into JAL-1705_trialMerge
2016-01-27 tcofoegbuJAL-1479 fixed off-by-one error in SIFTS mapping output...
2016-01-26 tcofoegbuJAL-1999 JAL-1479 implemented configurable fail-safe...
2016-01-25 gmungocJAL-1705 EnsemblGene added, and related refactoring
2016-01-25 gmungocJAL-1997 database browser support tooltip if available
2016-01-21 tcofoegbuJAL-1479 JAL-1979 bugfix to check entire annotation...
2016-01-21 gmungocJAL-1705 redundant comment removed
2016-01-21 gmungocJAL-1705 unused import removed
2016-01-21 tcofoegbuJAL-1479 JAL-1979 updated the modified-aminoacid triple...
2016-01-21 gmungocJAL-1705 get xrefs only for dna/peptide; code tidy
2016-01-08 gmungocJAL-1705 DbSourceProxy properties converted to methods...
2016-01-07 tcofoegbuJAL-1479 implemented timestamp based caching of SIFTS...
2016-01-05 gmungocMerge remote-tracking branch 'origin/features/JAL-1705_...
2016-01-05 gmungocJAL-653 typed map for feature colours in method signature
2015-12-22 gmungocJAL-653 hold AlignedCodonFrame collections as list...
2015-11-25 tcofoegbuJAL-1479 refactored DBRef fetching code to StructureCho...
2015-11-25 tcofoegbuJAL-1479 applet build debug
2015-11-25 tcofoegbuJAL-1479 bugfix after decoupling SIFTS preference settings
2015-11-23 tcofoegbuJAL-1479 commented out DBRef fetching code from SIFTS...
2015-11-21 gmungocJAL-653 JAL-1968 FeaturesFile now handles Jalview or...
2015-11-17 tcofoegbuJAL-1479 Refactored Sifts configuration preference...
2015-11-16 tcofoegbuJAL-1967 JAL-1479 refactored sequence<->structure mappi...
2015-11-13 tcofoegbuJAL-1479 added transfer of residue annotation for SIFTS...
2015-11-11 tcofoegbuJAL-1957 JAL-1479 Further optimisation of SIFTs Client... features/JAL-1479_SIFTS-mapping
2015-11-05 tcofoegbuJAL-1479 SiftClient house keeping
2015-11-02 tcofoegbuJAL-1955 Uniprot sequence fetcher refactor
2015-10-29 tcofoegbuJAL-1926 JAL-1479 updated PDBfile fetcher to add source...
2015-10-28 tcofoegbuJAL-1479 added support for SIFTs mapping output viewing...
2015-10-28 tcofoegbuJAL-1887 JAL-1479 bugfix for incorrect start/end for...
2015-10-22 tcofoegbuJAL-1479 added basic support for SIFTs mapping - more...
2015-10-22 tcofoegbuJAL-1942 JAL-1479 DBRefFetcher refactor
2015-10-15 Jim ProcterMerge branch 'develop' into features/JAL-1705_ensembl
2015-10-15 tcofoegbuJAL-1479 refactored SequenceI interface - changed getDB...
2015-10-07 Jim ProcterJAL-1894 source formatting
2015-09-30 tcofoegbuJAL-1852 made disabling querying of unpublished PDB...
2015-09-30 tcofoegbuJAL-1852 disable querying of unpublished PDB entries...
2015-09-24 gmungocJAL-1904 parse feature file colours on to alignment...
2015-09-14 gmungocJAL-1851 add retrieved sequence's start (-1) to match...
2015-09-10 Jim ProcterJAL-1645 licencing for new files in src
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-09-10 Jim ProcterJAL-1370 mark Jpred query sequence as reference sequence
2015-09-06 Jim ProcterJAL-1645 JAL-1355 UI/i18n: added missing messages,...
2015-09-01 gmungocJAL-1355 user error message text externalised
2015-08-31 tcofoegbumerge
2015-08-31 tcofoegbuJAL-1700 updated error handling with suggested improvem...
2015-08-27 gmungocJAL-1544 message label corrected
2015-08-07 tcofoegbuJAL-1824 updated caching procedure for pdb entries...
2015-08-04 tcofoegbuJAL-1821 updated the reference sequence column of struc...
2015-07-29 tcofoegbuJAL-1821 discarded sequence name truncation in summary...
2015-07-23 Jim ProcterMerge branch 'features/JAL-1759jmolUpdate' into develop
2015-07-23 tcofoegbuResolved merge conflict in EdtiCommandTest.java
2015-07-23 tcofoegbuJAL-1805 modified test setup's so the are ran for group...
2015-07-23 Jim ProcterJAL-1819 use Float.isNaN() to check for NaNs!
2015-07-08 gmungocJAL-1759 merge from develop
2015-07-01 tcofoegbuhouse keeping
2015-06-30 gmungocJAL-1759 deprecated EnfinEnvision2OneWay removed
2015-06-28 Jim ProcterJAL-1705 javadoc to clarify requirements for regex...
2015-06-28 Jim ProcterJAL-1705 add concrete ENSEMBL sequence fetchers
2015-06-28 Jim ProcterJAL-1551 reorder imports
2015-06-26 gmungocMerge branch 'develop' into features/JAL-1759jmolUpdate
2015-06-26 gmungocJAL-1759 updates for Jmol 14.2.14_25.06.11
2015-06-25 Jim ProcterJAL-1691 avoid NPE when original split frame has been...
2015-06-23 Jim ProcterJAL-1782 JAL-1780 JAL-653 JAL-1892 update patched refac...
2015-06-22 Jim ProcterJAL-1780 JAL-653 Format/AppletFormat import and export...
2015-06-22 Jim ProcterJAL-653 JAL-1780 reorder imports
2015-06-19 tcofoegbuJAL-1270 JUnit to TestNG refactoring
2015-06-05 Jim ProcterJAL-1482 refactor setTableData to more sensible name...
2015-06-02 tcofoegbuJAL-1641 applet build fix
2015-05-28 tcofoegbuJAL-1700 made PDB service error mechanism more user...
2015-05-28 tcofoegbuJAL-1751 provided method to overide isCellEditable...
2015-05-15 gmungocJAL-1270 main method converted to JUnit test
2015-05-13 gmungocMerge branch 'develop' of https://source.jalview.org...
2015-05-13 tcofoegbuFixed some broken tests
2015-05-12 gmungocJAL-1712 fixes/tests for Castor binding and 'show flank...
2015-05-07 Jim ProcterJAL-1731 fix JPred4 citation in legacy client code
2015-05-01 tcofoegbuJAL-1700 Improved the error handling mechanism for...
2015-05-01 tcofoegbuJAL-1726 Added external integration test for PDB Rest API
2015-04-17 tcofoegbuJAL-1698 bug fix to enable addition of a single structu... bug/JAL-1698_Append-Structures
2015-04-13 gmungocJAL-1693 make exon alignment for get-xref splitframe...
2015-03-27 tcofoegbumerge commit
2015-03-26 tcofoegbuJAL-1667 updated parseJsonExceptionString method in... features/JAL-1667_PDBe_Search_API
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch
2015-03-26 gmungocJAL-1688 compiler warnings removed
2015-03-25 tcofoegbuJAL-1668 Tab for summary config, auto refresh after...
2015-03-19 tcofoegbuJAL-1668 finally clean up
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