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JAL-1919 code improvement to make PDB sequence fetcher file format configurable....
[jalview.git] / src / jalview / ws /
2016-03-22 tcofoegbuJAL-1919 code improvement to make PDB sequence fetcher... tree | commitdiff
2016-03-21 tcofoegbudevelop merge features/JAL-1919_mmCIF-Support tree | commitdiff
2016-03-21 tcofoegbuJAL-2028 added improvement for preconfigured ordering... tree | commitdiff
2016-03-21 tcofoegbudevelop merge tree | commitdiff
2016-03-16 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-03-16 tcofoegbuJAL-2028 improvment to the displayed column customisation tree | commitdiff
2016-03-15 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... mungo_develop tree | commitdiff
2016-03-15 gmungocJAL-2016 FeatureSettingsI now FeatureSettingsModelI tree | commitdiff
2016-03-11 tcofoegbuJAL-2026 Bug fix for best quality filter tree | commitdiff
2016-03-11 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... tree | commitdiff
2016-03-11 gmungocJAL-1705 refactoring etc for fetching Ensembl --> Uniprot tree | commitdiff
2016-03-10 tcofoegbudevelop merge tree | commitdiff
2016-03-10 tcofoegbuJAL-2024 code to enforce case insensitivity for manual... tree | commitdiff
2016-03-03 tcofoegbuJAL-1919 updated unicode mapping symbol tree | commitdiff
2016-03-03 tcofoegbuJAL-1919 updated unicode symbol for mapping tree | commitdiff
2016-03-03 gmungocJAL-1705 include stop codons in derived CDS; support... tree | commitdiff
2016-02-25 tcofoegbuJAL-1919 initial support for mmCIF using JMol API.... tree | commitdiff
2016-02-25 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... tree | commitdiff
2016-02-23 tcofoegbuJAL-1720 renamed Structure Chooser filters according... tree | commitdiff
2016-02-22 tcofoegbuJAL-1720 JAL-2002 improvement for 'uniprot coverage... tree | commitdiff
2016-02-22 gmungocJAL-1705 first pass at applying preset feature colourin... tree | commitdiff
2016-02-20 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... tree | commitdiff
2016-02-19 tcofoegbuJAL-2009 Codes to enable storing inserted residues... tree | commitdiff
2016-02-12 gmungocJAL-1270 remove trailing space + test tree | commitdiff
2016-02-12 gmungocJAL-1705 various refactoring towards Uniprot-to-Ensembl... tree | commitdiff
2016-02-04 gmungocJAL-1705 temporary variable to aid inspection in debugger tree | commitdiff
2016-02-01 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... tree | commitdiff
2016-01-28 gmungocMerge branch 'develop' into JAL-1705_trialMerge tree | commitdiff
2016-01-27 tcofoegbuJAL-1479 fixed off-by-one error in SIFTS mapping output... tree | commitdiff
2016-01-26 tcofoegbudevelop merge tree | commitdiff
2016-01-26 tcofoegbuJAL-1999 JAL-1479 implemented configurable fail-safe... tree | commitdiff
2016-01-25 gmungocJAL-1705 EnsemblGene added, and related refactoring tree | commitdiff
2016-01-25 gmungocJAL-1997 database browser support tooltip if available tree | commitdiff
2016-01-21 tcofoegbuJAL-1479 JAL-1979 bugfix to check entire annotation... tree | commitdiff
2016-01-21 gmungocJAL-1705 redundant comment removed tree | commitdiff
2016-01-21 gmungocJAL-1705 unused import removed tree | commitdiff
2016-01-21 tcofoegbuJAL-1479 JAL-1979 updated the modified-aminoacid triple... tree | commitdiff
2016-01-21 gmungocJAL-1705 get xrefs only for dna/peptide; code tidy tree | commitdiff
2016-01-21 tcofoegbuJAL-1919 basic support for importing and viewing mmCIF... tree | commitdiff
2016-01-08 gmungocJAL-1705 DbSourceProxy properties converted to methods... tree | commitdiff
2016-01-07 tcofoegbuJAL-1479 implemented timestamp based caching of SIFTS... tree | commitdiff
2016-01-05 gmungocMerge remote-tracking branch 'origin/features/JAL-1705_... tree | commitdiff
2016-01-05 gmungocJAL-653 typed map for feature colours in method signature tree | commitdiff
2015-12-22 gmungocJAL-653 hold AlignedCodonFrame collections as list... tree | commitdiff
2015-11-25 tcofoegbuJAL-1479 refactored DBRef fetching code to StructureCho... tree | commitdiff
2015-11-25 tcofoegbuJAL-1479 applet build debug tree | commitdiff
2015-11-25 tcofoegbuJAL-1479 bugfix after decoupling SIFTS preference settings tree | commitdiff
2015-11-23 tcofoegbuJAL-1479 commented out DBRef fetching code from SIFTS... tree | commitdiff
2015-11-21 gmungocJAL-653 JAL-1968 FeaturesFile now handles Jalview or... tree | commitdiff
2015-11-17 tcofoegbuJAL-1479 Refactored Sifts configuration preference... tree | commitdiff
2015-11-16 tcofoegbuJAL-1967 JAL-1479 refactored sequence<->structure mappi... tree | commitdiff
2015-11-13 tcofoegbuJAL-1479 added transfer of residue annotation for SIFTS... tree | commitdiff
2015-11-11 tcofoegbuJAL-1957 JAL-1479 Further optimisation of SIFTs Client... features/JAL-1479_SIFTS-mapping tree | commitdiff
2015-11-05 tcofoegbuJAL-1479 SiftClient house keeping tree | commitdiff
2015-11-02 tcofoegbuJAL-1955 Uniprot sequence fetcher refactor tree | commitdiff
2015-10-29 tcofoegbuJAL-1926 JAL-1479 updated PDBfile fetcher to add source... tree | commitdiff
2015-10-28 tcofoegbuJAL-1479 added support for SIFTs mapping output viewing... tree | commitdiff
2015-10-28 tcofoegbuJAL-1887 JAL-1479 bugfix for incorrect start/end for... tree | commitdiff
2015-10-22 tcofoegbuJAL-1479 added basic support for SIFTs mapping - more... tree | commitdiff
2015-10-22 tcofoegbuJAL-1942 JAL-1479 DBRefFetcher refactor tree | commitdiff
2015-10-15 Jim ProcterMerge branch 'develop' into features/JAL-1705_ensembl tree | commitdiff
2015-10-15 tcofoegbuJAL-1479 refactored SequenceI interface - changed getDB... tree | commitdiff
2015-10-07 Jim ProcterJAL-1894 source formatting tree | commitdiff
2015-09-30 tcofoegbuJAL-1852 made disabling querying of unpublished PDB... tree | commitdiff
2015-09-30 tcofoegbuJAL-1852 disable querying of unpublished PDB entries... tree | commitdiff
2015-09-24 gmungocJAL-1904 parse feature file colours on to alignment... tree | commitdiff
2015-09-14 gmungocJAL-1851 add retrieved sequence's start (-1) to match... tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 licencing for new files in src tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports tree | commitdiff
2015-09-10 Jim ProcterJAL-1370 mark Jpred query sequence as reference sequence tree | commitdiff
2015-09-06 Jim ProcterJAL-1645 JAL-1355 UI/i18n: added missing messages,... tree | commitdiff
2015-09-01 gmungocJAL-1355 user error message text externalised tree | commitdiff
2015-08-31 tcofoegbumerge tree | commitdiff
2015-08-31 tcofoegbuJAL-1700 updated error handling with suggested improvem... tree | commitdiff
2015-08-27 gmungocJAL-1544 message label corrected tree | commitdiff
2015-08-07 tcofoegbuJAL-1824 updated caching procedure for pdb entries... tree | commitdiff
2015-08-04 tcofoegbuJAL-1821 updated the reference sequence column of struc... tree | commitdiff
2015-07-29 tcofoegbuJAL-1821 discarded sequence name truncation in summary... tree | commitdiff
2015-07-23 Jim ProcterMerge branch 'features/JAL-1759jmolUpdate' into develop tree | commitdiff
2015-07-23 tcofoegbuResolved merge conflict in EdtiCommandTest.java tree | commitdiff
2015-07-23 tcofoegbuJAL-1805 modified test setup's so the are ran for group... tree | commitdiff
2015-07-23 Jim ProcterJAL-1819 use Float.isNaN() to check for NaNs! tree | commitdiff
2015-07-08 gmungocJAL-1759 merge from develop tree | commitdiff
2015-07-01 tcofoegbuhouse keeping tree | commitdiff
2015-06-30 gmungocJAL-1759 deprecated EnfinEnvision2OneWay removed tree | commitdiff
2015-06-28 Jim ProcterJAL-1705 javadoc to clarify requirements for regex... tree | commitdiff
2015-06-28 Jim ProcterJAL-1705 add concrete ENSEMBL sequence fetchers tree | commitdiff
2015-06-28 Jim ProcterJAL-1551 reorder imports tree | commitdiff
2015-06-26 gmungocMerge branch 'develop' into features/JAL-1759jmolUpdate tree | commitdiff
2015-06-26 gmungocJAL-1759 updates for Jmol 14.2.14_25.06.11 tree | commitdiff
2015-06-25 Jim ProcterJAL-1691 avoid NPE when original split frame has been... tree | commitdiff
2015-06-23 Jim ProcterJAL-1782 JAL-1780 JAL-653 JAL-1892 update patched refac... tree | commitdiff
2015-06-22 Jim ProcterJAL-1780 JAL-653 Format/AppletFormat import and export... tree | commitdiff
2015-06-22 Jim ProcterJAL-653 JAL-1780 reorder imports tree | commitdiff
2015-06-19 tcofoegbuJAL-1270 JUnit to TestNG refactoring tree | commitdiff
2015-06-05 Jim ProcterJAL-1482 refactor setTableData to more sensible name... tree | commitdiff
2015-06-02 tcofoegbuJAL-1641 applet build fix tree | commitdiff
2015-05-28 tcofoegbuJAL-1700 made PDB service error mechanism more user... tree | commitdiff
2015-05-28 tcofoegbuJAL-1751 provided method to overide isCellEditable... tree | commitdiff
2015-05-15 gmungocJAL-1270 main method converted to JUnit test tree | commitdiff
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