Revert "Merge branch 'bug/JAL-3806_mappingCoversSequence' into releases/Release_2_11_...
[jalview.git] / src / jalview / ws /
2017-08-09 Jim ProcterJAL-2425 remove overloaded getSequenceRecords method...
2017-06-14 gmungocJAL-2598 Sequence.getSequence return a copy of the...
2017-06-09 gmungocJAL-2446 merged to spike branch
2017-05-30 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-05-29 Jim ProcterMerge branch 'features/JAL-2465_No-mapping_Jmol-structu...
2017-05-29 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-05-25 gmungocJAL-2050 make SequenceFeature.score final, adjust const...
2017-05-24 gmungocJAL-2506 relocate Uniprot binding classes, bind to...
2017-05-24 gmungocJAL-2505 JAL-2542 SequenceFeatures.shift() to shift...
2017-05-24 gmungocJAL-2542 correct adjustment of sequence features for...
2017-05-23 Jim ProcterJAL-2549 replace JABAWS 2.1 with 2.2 client and remove...
2017-05-16 gmungocJAL-2505 set SequenceFeature group in constructor
2017-05-09 tcofoegbuJAL-2520 improvement to download and update structure...
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into
2017-05-02 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-05-01 tcofoegbuJAL-2482 bug fix
2017-04-26 kiramtJAL-2388 last separation of hidden columns/col selection
2017-04-24 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection...
2017-04-21 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-04-19 tcofoegbuJAL-2482 added null check
2017-04-18 tcofoegbuJAL-2482 Bugfix
2017-04-07 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-04-03 gmungocMerge branch 'develop' into bug/JAL-2314
2017-03-23 kiramtJAL-2314 Tweaks to stop thread sync issues
2017-03-23 kiramtJAL-2314 Tidies
2017-03-23 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-03-22 kiramtJAL-2461 Removed DAS error stack trace, updated message
2017-03-21 Jim ProcterMerge branch 'features/JAL-2388OverviewWindow' into...
2017-03-16 kiramtJAL-2388 Applied ViewportRanges to code
2017-03-01 gmungocMerge branch 'features/JAL-2295setChimeraAttributes...
2017-02-27 gmungocJAL-1632 similarity options on TreeChooser panel affect...
2017-02-20 gmungocJAL-2403 ScoreModelI now DistanceModelI, ScoreMatrix...
2017-02-18 gmungocJAL-2416 better encapsulated 'constants' for BLOSUM62...
2017-02-17 gmungocJAL-2416 removed DNA and PAM250 matrices from ResiduePr...
2017-02-08 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-01-26 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-01-26 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-26 gmungocJAL-2344 test fix and code tidy for review comments
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2295setChimera...
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-11 gmungocJAL-2344 FileFormats singleton for formats, FileFormatI...
2017-01-09 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-01-05 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2016-12-16 gmungocJAL-2356 enhanced unit test to verify reuse (or not...
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum,
2016-12-15 kiramtJAL-2316 Changes following review.
2016-12-14 Jim ProcterMerge branch 'patch/JAL-2197_jpredforjnets' into develop
2016-12-13 kiramtMerge branch 'develop' into features/JAL-2316
2016-12-08 gmungocMerge branch 'develop' into features/JAL-2295setChimera...
2016-12-07 gmungocJAL-2356 use cached Sifts file if not expired
2016-12-07 kiramtJAL-2316 Restructure identifiers.org download
2016-11-30 gmungocMerge branch 'develop' into features/JAL-2295setChimera...
2016-11-30 gmungocJAL-2344 use ".cif" for saved mmCIF file (and refactor...
2016-11-29 gmungocMerge branch 'develop' into features/JAL-2295setChimera...
2016-11-29 gmungocJAL-2344 corrected conversion of Type enum to FileFormat features/JAL-2344FileFormatI
2016-11-28 gmungocMerge branch 'develop' into trialMerge
2016-11-25 gmungocMerge branch 'develop' into trialMerge
2016-11-24 tcofoegbuJAL-2326 updated references of JOptionPane to JvOptionPane
2016-11-24 gmungocFileFormatI further tweaks, clean compile
2016-11-16 gmungocJAL-2319 corrected reporting of SIFTS mapping
2016-11-11 gmungocMerge branch 'develop' into features/JAL-2295setChimera...
2016-11-11 gmungocJAL-2295 JAL-2269 JAL-2319 mockable SIFTS file, fix...
2016-11-08 tcofoegbuJAL-2292 updated method calls
2016-11-04 tcofoegbuJAL-2292 fix for wrong mapping output in sequence mappi...
2016-11-03 tcofoegbuJAL-2312 Bug fix for repeated mapping generation from...
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-24 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch'
2016-10-24 Jim ProcterJAL-2197 renamed Jnet to Jared in help, web services...
2016-10-14 gmungocMerge branch 'releases/Release_2_10_Branch' into task... task/JAL-2196pdbeProperties
2016-10-13 gmungocMerge branch 'releases/Release_2_10_Branch' into develop
2016-10-13 gmungocJAL-1479 revise warning message to suit all contexts bug/JAL-2044jmolModelBinding
2016-10-11 gmungocMerge branch 'releases/Release_2_10_Branch' into develop
2016-10-11 gmungocJAL-1479 small tidy of error message when Sifts mapping...
2016-10-06 gmungocJAL-2254 map error text in root node of EMBL XML response
2016-10-06 gmungocMerge branch 'develop' into task/JAL-2196pdbeProperties
2016-10-06 gmungocJAL-2245 checks for null added (in case EMBL fetch...
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-10-05 Jim ProcterJAL-2189 apply license
2016-10-05 Jim ProcterJAL-2189 source formatting
2016-10-05 gmungocMerge branch 'develop' into task/JAL-2196pdbeProperties
2016-10-05 Jim ProcterRevert "JAL-2245 Castor mapping and code changes for...
2016-10-04 gmungocMerge branch 'bug/JAL-2245enaXmlChange' into develop
2016-10-04 gmungocJAL-2245 Castor mapping and code changes for change... bug/JAL-2245enaXmlChange
2016-10-03 Jim ProcterJAL-2210 use addDBRef to ensure normalisation (just...
2016-10-03 Jim ProcterJAL-2210 need to add both transcript and product, and...
2016-10-03 Jim ProcterJAL-2210 JAL-2232 remove version number from ENACDS...
2016-10-02 Jim ProcterJAL-2210 remove ENSEMBL from protein DB list:
2016-10-01 Jim ProcterMerge branch 'develop' into bug/JAL-2210_ensembl_unipro...
2016-09-29 gmungocJAL-1856 better warning messages for sequence matching... features/JAL-1856dbRefFetcherMessages
2016-09-29 gmungocJAL-2213 code warnings addressed (typed collections...
2016-09-29 gmungocJAL-2213 removed PDB from db sources list; also code...
2016-09-28 Jim ProcterJAL-2232 extract EMBLCDS refs from EMBL refs on Uniprot...
2016-09-07 Jim ProcterJAL-282 TODO - Sequence name from PDB had redundant...
2016-09-06 gmungocJAL-2106 DBRefEntry.isPrimary() renamed isPrimaryCandid...
2016-08-31 Jim ProcterJAL-1926 JAL-2106 source DB refs come from SequenceI...
2016-08-31 Jim ProcterJAL-1926 JAL-2106 resolve source DB refs using canonica...
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum
2016-08-26 Jim ProcterJAL-2154 patch regression on DbRefFetcher due to PDB...
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