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Merge branch 'develop' into features/JAL-2295setChimeraAttributes
[jalview.git]
/
src
/
jalview
/
2016-10-25
gmungoc
JAL-98 javadoc / comments updated
tree
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commitdiff
2016-10-24
Jim Procter
Merge branch 'releases/Release_2_10_0_Branch'
tree
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commitdiff
2016-10-24
gmungoc
JAL-98 fixme comment removed - nothing to do
tree
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commitdiff
2016-10-24
gmungoc
JAL-98 ResidueCount 100% test coverage (and bug fixes!)
tree
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commitdiff
2016-10-24
kiramt
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-10-24
kiramt
Unit tests for UrlLink
bug/JAL-2281JAL-2282
tree
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commitdiff
2016-10-24
Jim Procter
Merge branch 'bug/JAL-2272cmdClickGroupEdit' into develop
tree
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commitdiff
2016-10-24
gmungoc
JAL-2272 Cmd-drag to group edit sequences on Mac (Ctrl...
bug/JAL-2272cmdClickGroupEdit
tree
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commitdiff
2016-10-24
kiramt
Fixed dialog box messages in English and Spanish. Adjus...
tree
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commitdiff
2016-10-24
gmungoc
Merge branch 'develop' into bug/JAL-98consensusMemory
tree
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commitdiff
2016-10-24
kiramt
Correct Preferences to check for SEQUENCE_NAME as well...
tree
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commitdiff
2016-10-24
gmungoc
JAL-2283 set 'by conservation' correctly when changing...
tree
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commitdiff
2016-10-24
kiramt
Code tidy up. Unit test passes.
tree
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commitdiff
2016-10-22
kiramt
Working links menu
tree
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commitdiff
2016-10-21
kiramt
Factored URL Link constants out into UrlConstants file.
tree
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commitdiff
2016-10-17
kiramt
Merge remote-tracking branch 'origin/bug/JAL-1552dragnd...
tree
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commitdiff
2016-10-17
kiramt
acceptDrop call added before getTransferable in alignme...
bug/JAL-1552dragndroptake2
tree
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commitdiff
2016-10-17
tcofoegbu
JAL-2262 JAL-2195 Improvement to set PDBId availability...
tree
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commitdiff
2016-10-17
kiramt
Re-attempt to fix JAL-1552 by removing extra calls...
tree
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commitdiff
2016-10-14
gmungoc
Merge branch 'releases/Release_2_10_Branch' into task...
task/JAL-2196pdbeProperties
tree
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commitdiff
2016-10-13
gmungoc
JAL-2253 2 second timeout on ping URL, default 5 minute...
feature/JAL-2553ensemblGenomes
tree
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commitdiff
2016-10-13
gmungoc
Merge branch 'releases/Release_2_10_Branch' into develop
tree
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commitdiff
2016-10-13
gmungoc
JAL-1479 revise warning message to suit all contexts
bug/JAL-2044jmolModelBinding
tree
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commitdiff
2016-10-13
gmungoc
JAL-2044 increase Jmol file load timeout from 5 to...
tree
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commitdiff
2016-10-13
gmungoc
JAL-2044 ensure AAStructureBindingModel.pdbEntry has...
tree
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commitdiff
2016-10-13
gmungoc
JAL-2044 include model name in progress bar message...
tree
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commitdiff
2016-10-11
tcofoegbu
Merge branch 'features/JAL-2039_Offer_cached_structuref...
tree
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commitdiff
2016-10-11
tcofoegbu
JAL-2039 improvement to offer cached structure view...
features/JAL-2039_Offer_cached_structurefiles_immediately
tree
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commitdiff
2016-10-11
gmungoc
Merge branch 'releases/Release_2_10_Branch' into develop
tree
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commitdiff
2016-10-11
gmungoc
JAL-2241 check for null jprovider when processing New...
tree
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commitdiff
2016-10-11
kiramt
JAL-1552 added acceptDrop call before getTransferable...
bug/JAL-1552dragndropurl
tree
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commitdiff
2016-10-11
gmungoc
Merge branch 'releases/Release_2_10_Branch' into develop
tree
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commitdiff
2016-10-11
gmungoc
JAL-1479 small tidy of error message when Sifts mapping...
tree
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commitdiff
2016-10-11
gmungoc
JAL-2233 reverted changes to Jmol logging levels
tree
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commitdiff
2016-10-10
tcofoegbu
JAL-2262 JAL-2195 bug fix for mapping local structure...
tree
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commitdiff
2016-10-06
gmungoc
JAL-2254 map error text in root node of EMBL XML response
tree
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commitdiff
2016-10-06
gmungoc
Merge branch 'develop' into bug/JAL-98consensusMemory
tree
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commitdiff
2016-10-06
gmungoc
Merge branch 'develop' into task/JAL-2196pdbeProperties
tree
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commitdiff
2016-10-06
gmungoc
JAL-2245 checks for null added (in case EMBL fetch...
tree
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commitdiff
2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
tree
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commitdiff
2016-10-05
Jim Procter
JAL-2036 rebuild menus for each panel before adding...
tree
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commitdiff
2016-10-05
Jim Procter
JAL-2189 license header
tree
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commitdiff
2016-10-05
Jim Procter
JAL-2189 apply license
tree
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commitdiff
2016-10-05
Jim Procter
JAL-2189 source formatting
tree
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commitdiff
2016-10-05
gmungoc
Merge branch 'develop' into task/JAL-2196pdbeProperties
tree
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commitdiff
2016-10-05
Jim Procter
Revert "JAL-2245 Castor mapping and code changes for...
tree
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commitdiff
2016-10-05
gmungoc
JAL-1191 revert to using SequenceOntologyLite due to...
tree
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commitdiff
2016-10-05
gmungoc
JAL-1191 configure full SO for desktop, SOLite for...
tree
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commitdiff
2016-10-05
gmungoc
JAL-2245 defence against NullPointer if no EMBL data...
tree
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commitdiff
2016-10-05
gmungoc
JAL-1191 use full SO in desktop application
tree
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commitdiff
2016-10-05
gmungoc
JAL-2105 update Ensembl REST version to 4.7
tree
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commitdiff
2016-10-05
gmungoc
JAL-1191 refined warning message
tree
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commitdiff
2016-10-05
gmungoc
JAL-1191 added mRNA isA transcript to SequenceOntologyL...
tree
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commitdiff
2016-10-04
gmungoc
Merge branch 'bug/JAL-2245enaXmlChange' into develop
tree
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commitdiff
2016-10-04
gmungoc
JAL-2245 Castor mapping and code changes for change...
bug/JAL-2245enaXmlChange
tree
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commitdiff
2016-10-04
gmungoc
JAL-2232 JAL-2154 update dbrefs to newly created datase...
tree
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commitdiff
2016-10-03
gmungoc
JAL-2110 javadoc formatting only
tree
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commitdiff
2016-10-03
gmungoc
JAL-2110 JAL-1705 handle not found (400) better
tree
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commitdiff
2016-10-03
gmungoc
JAL-2110 additional tests for setDatasetSequence, javad...
tree
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commitdiff
2016-10-03
gmungoc
JAL-98 throw exception (unhandled) for int overthrow...
tree
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commitdiff
2016-10-03
gmungoc
JAL-98 use Profile to store consensus, ResidueCount...
tree
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commitdiff
2016-10-03
gmungoc
JAL-98 bespoke fast percentage formatter for consensus...
tree
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commitdiff
2016-10-03
Jim Procter
JAL-2210 use addDBRef to ensure normalisation (just...
tree
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commitdiff
2016-10-03
Jim Procter
JAL-2210 need to add both transcript and product, and...
tree
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commitdiff
2016-10-03
Jim Procter
JAL-2210 JAL-2232 remove version number from ENACDS...
tree
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commitdiff
2016-10-03
Jim Procter
JAL-2210 hack to remove EMBL from Protein crossrefs...
tree
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commitdiff
2016-10-03
Jim Procter
JAL-2210 explicit ‘doNotAdd’ list to prevent sequences...
tree
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commitdiff
2016-10-02
Jim Procter
JAL-2210 remove ENSEMBL from protein DB list:
tree
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commitdiff
2016-10-02
Jim Procter
JAL-2210 two pass attempt to import retrieved sequences...
tree
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commitdiff
2016-10-02
Jim Procter
JAL-2210 try to merge all sequences referenced by a...
tree
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commitdiff
2016-10-02
Jim Procter
JAL-2210 comments
tree
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commitdiff
2016-10-02
Jim Procter
JAL-2210 discover candidate dataset sequences for an...
tree
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commitdiff
2016-10-02
Jim Procter
JAL-2079 pass server name when reporting FTS ‘warning...
tree
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commitdiff
2016-10-01
Jim Procter
Merge branch 'develop' into bug/JAL-2210_ensembl_unipro...
tree
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commitdiff
2016-10-01
Jim Procter
JAL-2210 factored out code for processing cross-referen...
tree
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commitdiff
2016-10-01
Jim Procter
JAL-2210 refactor code to remove from a list of dbrefs...
tree
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commitdiff
2016-09-30
Jim Procter
JAL-2210 some DBRef xref/ref correspondences may add...
tree
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commitdiff
2016-09-30
Jim Procter
JAL-2210 CrossRef.findInDataset should search for prese...
tree
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commitdiff
2016-09-30
Jim Procter
JAL-2210 add uniprot+mapping between ENST and ENSP...
tree
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commitdiff
2016-09-30
gmungoc
Merge branch 'develop' into bug/JAL-98consensusMemory
tree
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commitdiff
2016-09-30
gmungoc
JAL-2236 code restored (and some compiler warnings...
tree
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commitdiff
2016-09-30
gmungoc
Merge branch 'develop' into features/JAL-1856dbRefFetch...
tree
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commitdiff
2016-09-30
gmungoc
JAL-2236 fixes for desktop and applet implementation...
tree
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commitdiff
2016-09-29
gmungoc
JAL-1856 better warning messages for sequence matching...
features/JAL-1856dbRefFetcherMessages
tree
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commitdiff
2016-09-29
gmungoc
JAL-2213 code warnings addressed (typed collections...
tree
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commitdiff
2016-09-29
gmungoc
JAL-2213 removed PDB from db sources list; also code...
tree
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commitdiff
2016-09-29
gmungoc
JAL-2213 made RESNUM constant private (not used elsewhe...
tree
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commitdiff
2016-09-29
gmungoc
JAL-2213 corrected wait for files to load in Jmol;...
tree
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commitdiff
2016-09-29
gmungoc
JAL-2237 apply default filter as sort in initial search
tree
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commitdiff
2016-09-29
Jim Procter
JAL-2236 include associated sequence id for annotation...
tree
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commitdiff
2016-09-29
Jim Procter
Merge branch 'patch/JAL-2238_tcoffee_subgroups' into...
tree
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commitdiff
2016-09-29
Jim Procter
JAL-2236 fix: bail if no context available for subgroup
tree
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commitdiff
2016-09-28
Jim Procter
JAL-2235 raise exceptions if self reference or referenc...
tree
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commitdiff
2016-09-28
Jim Procter
JAL-2210 patch for when no DBRefs on sequence
tree
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commitdiff
2016-09-28
Jim Procter
JAL-2210 instrument setDBRefs to call ensurePrimaries
tree
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commitdiff
2016-09-28
Jim Procter
JAL-2210 JAL-2232 check response code before attempting...
tree
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commitdiff
2016-09-28
Jim Procter
JAL-2232 extract EMBLCDS refs from EMBL refs on Uniprot...
tree
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commitdiff
2016-09-27
gmungoc
JAL-2233 less verbose logging for Jmol
tree
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commitdiff
2016-09-27
Jim Procter
Merge branch 'develop' into bug/JAL-2210_ensembl_unipro...
tree
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commitdiff
2016-09-27
Jim Procter
JAL-2210 formatting
tree
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commitdiff
next