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JAL-1640 getters and setters for viewStyleI - note the caller needs to trigger view...
[jalview.git] / src / jalview /
2015-02-02 Jim ProcterJAL-1640 getters and setters for viewStyleI - note... tree | commitdiff
2015-02-02 Jim ProcterJAL-1640 copy constructor test and implementation by... tree | commitdiff
2015-02-02 Jim ProcterJAL-715 tweaks for SRBS description string parsing tree | commitdiff
2015-02-02 Jim ProcterJAL-1161 JAL-1606 note about awt/swing dependency in... tree | commitdiff
2015-02-02 Jim ProcterJAL-1640 JAL-1551 formatting/imports/remove dead code tree | commitdiff
2015-02-02 Jim ProcterJAL-1640 updates to use get/setter on viewportI: effici... tree | commitdiff
2015-02-02 Jim ProcterJAL-1640 separated style operations into a new ViewStyl... tree | commitdiff
2015-01-28 Jim ProcterJAL-1565 automatically mark query sequence as the seque... tree | commitdiff
2015-01-28 Jim Procter JAL-674 patch to make Mapping.compareTransferredToR... tree | commitdiff
2015-01-27 gmungocJAL-1588 new class renamed tree | commitdiff
2015-01-26 gmungocMerge branch 'features/JAL-1588saveChimeraSession'... tree | commitdiff
2015-01-26 gmungocJAL-1588 restoring saved Chimera session(s) tree | commitdiff
2015-01-23 Charles OfoegbuMerge branch 'features/JAL-1553_improvement-select... tree | commitdiff
2015-01-23 gmungocJAL-1588 first working (?) restore of Chimera session... tree | commitdiff
2015-01-23 Charles OfoegbuJAL-1553 added help documentation and updated Annotatio... features/JAL-1553_improvement-select-column-by-annotation-row-query-interface tree | commitdiff
2015-01-23 Jim ProcterJAL-1551 formatting tree | commitdiff
2015-01-23 Jim ProcterJAL-1286 don't print an exception if a non-gzip stream... tree | commitdiff
2015-01-23 Jim ProcterJAL-1551 crlf changes tree | commitdiff
2015-01-23 Jim ProcterJAL-969 hasHiddenRows is now an interface method tree | commitdiff
2015-01-23 Jim ProcterJAL-969 drop the hiddenColumns flag in favour of checki... tree | commitdiff
2015-01-23 Jim ProcterMerge branch 'develop' into feature_29/JAL-1372_referen... tree | commitdiff
2015-01-23 Jim ProcterJAL-1628 tweak signature of core annotation printer... tree | commitdiff
2015-01-23 Jim ProcterJAL-1551 formatting/imports tree | commitdiff
2015-01-23 Jim ProcterJAL-1551 JAL-962 formatting and code change ripples... tree | commitdiff
2015-01-23 Charles OfoegbuMerge branch 'features/JAL-1553_improvement-select... tree | commitdiff
2015-01-23 Charles OfoegbuJAL-1553 fixed null pointer exception thrown in SeqCanv... tree | commitdiff
2015-01-23 Jim ProcterJAL-1551 source code formatting tree | commitdiff
2015-01-23 Jim ProcterJAL-969 javadoc and mark interface overrides for clarity tree | commitdiff
2015-01-23 Jim ProcterJAL-1628 drop getShowAnnotation accessor in favour... tree | commitdiff
2015-01-22 Charles OfoegbuMerge branch 'features/JAL-1553_improvement-select... tree | commitdiff
2015-01-22 Charles OfoegbuJAL-1553 added applet support for the select-column... tree | commitdiff
2015-01-21 Jim ProcterMerge branch 'develop' into feature_29/JAL-1372_referen... tree | commitdiff
2015-01-20 Charles Ofoegbuclean up tree | commitdiff
2015-01-20 Charles Ofoegbuclean up tree | commitdiff
2015-01-20 Charles OfoegbuMerge branch 'features/JAL-1553_improvement-select... tree | commitdiff
2015-01-20 Charles OfoegbuFurther abstractions and clean up tree | commitdiff
2015-01-20 Charles OfoegbuMerge branch 'features/JAL-1553_improvement-select... tree | commitdiff
2015-01-20 Charles Ofoegbubasic house keeping tree | commitdiff
2015-01-20 Charles OfoegbuMerge branch 'features/JAL-1553_improvement-select... tree | commitdiff
2015-01-20 Charles OfoegbuJAL-1553 enhancement of column selection by annotation... tree | commitdiff
2015-01-18 Jim ProcterJAL-1372 i18n and tweaking set/unset representative... tree | commitdiff
2015-01-18 Jim ProcterJAL-1628 formatting tree | commitdiff
2015-01-18 Jim ProcterJAL-1628 employ new AnnotationFile reader method to... tree | commitdiff
2015-01-18 Jim ProcterJAL-1628 new entry point for reading annotation files... tree | commitdiff
2015-01-18 Jim ProcterJAL-1628 formatting and javadoc tree | commitdiff
2015-01-18 Jim ProcterJAL-1628 method to hide insertions to current sequence... tree | commitdiff
2015-01-18 Jim ProcterJAL-1628 wrappers for common checks on ColumnSelection tree | commitdiff
2015-01-18 Jim ProcterJAL-1628 ColumnSelection method to hide insertions... tree | commitdiff
2015-01-18 Jim ProcterJAL-1628 new method to get a list of insertions in... tree | commitdiff
2015-01-18 Jim ProcterJAL-1372 JAL-1114 JAL-1628 tidy sequenceI/sequence tree | commitdiff
2015-01-14 gmungocJAL-1629 .jar option removed from Alignment File Save... tree | commitdiff
2015-01-14 Charles OfoegbuMerge branch 'features/JAL-1553_select-columns-by-annot... tree | commitdiff
2015-01-14 Charles OfoegbuModified AnnotationColumnChooser to maintain state... features/JAL-1553_select-columns-by-annotation tree | commitdiff
2015-01-13 Charles OfoegbuMerge branch 'features/JAL-1553_select-columns-by-annot... tree | commitdiff
2015-01-13 Charles OfoegbuRefactored AnnotationColumnChoser and AnnotationColorCh... tree | commitdiff
2015-01-10 Charles OfoegbuJAL-1553 merge commit tree | commitdiff
2015-01-10 Charles OfoegbuJAL-1553 implementation of column selection by annotati... tree | commitdiff
2015-01-09 Jim ProcterMerge branch 'JAL-1372_referenceseq' into feature_29... tree | commitdiff
2015-01-09 Jim ProcterJAL-1483 formatting tree | commitdiff
2015-01-09 Jim ProcterJAL-1483 remember to look at base dataset sequence... tree | commitdiff
2015-01-09 gmungocJAL-1588 check Chimera session file still exists tree | commitdiff
2015-01-08 gmungocJAL-1588 part work save/restore of Chimera session tree | commitdiff
2015-01-07 Jim ProcterMerge branch 'develop' into JAL-1483_29dev tree | commitdiff
2015-01-07 Jim ProcterJAL-1483 patches to make test case pass: hamming distan... tree | commitdiff
2015-01-07 Jim ProcterJAL-1483 source formatting tree | commitdiff
2015-01-07 Jim ProcterJAL-1483 refactor NJTree constructor to allow preconfig... tree | commitdiff
2015-01-07 Jim ProcterJAL-1483 register feature similarity model tree | commitdiff
2015-01-07 Jim ProcterJAL-1483 null features not displayed tree | commitdiff
2015-01-07 Jim ProcterJAL-1483 check dataset for features if none found on... tree | commitdiff
2015-01-07 Jim ProcterJAL-1483 organise imports tree | commitdiff
2015-01-07 Jim ProcterJAL-1483 making type visible also adds it to registry tree | commitdiff
2015-01-07 gmungocJAL-1551 formatting applied tree | commitdiff
2015-01-07 gmungocJAL-1588 refactoring to StructureViewerBase and related tree | commitdiff
2015-01-06 gmungocJAL-1588 refactoring prior to 'save Chimera project' tree | commitdiff
2014-12-28 gmungocMerge branch 'features/JAL-1596ChimeraREST' into develop tree | commitdiff
2014-12-22 Charles OfoegbuPatch to synchronize title svg and allignment svg scrolling tree | commitdiff
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7 tree | commitdiff
2014-12-15 Charles Ofoegbuupdate HtmlSvgOutput to ignore browser invocation when... tree | commitdiff
2014-12-15 Charles Ofoegbuupdate HtmlSvgOutput to ignore browser invocation when... features/JAL-1605_html-svg-export tree | commitdiff
2014-12-14 Mungo CarstairsJAL-1596 set HTTP 1.1 in HttpClient tree | commitdiff
2014-12-09 gmungocJAL-1616 loading of datasets from XML patched tree | commitdiff
2014-12-08 Charles Ofoegbumerge commit tree | commitdiff
2014-12-08 Charles OfoegbuJAL-1613 hotfix for duplicated sequence after pairwise... tree | commitdiff
2014-12-08 Charles OfoegbuAdded annotation export configuration for Html export... tree | commitdiff
2014-12-05 Charles OfoegbuMerge branch 'features/JAL-1605_html-svg-export' into... tree | commitdiff
2014-12-05 Charles OfoegbuJAL-1605 added command line support for html export... tree | commitdiff
2014-12-05 Charles Ofoegbumodified html css tree | commitdiff
2014-12-05 Charles OfoegbuJAL-1605 merge commit tree | commitdiff
2014-12-05 Charles OfoegbuChange the Html export to utilize svg tree | commitdiff
2014-12-05 gmungocJAL-1614 flag 'protein' removed tree | commitdiff
2014-12-05 gmungocJAL-1614 flag 'protein' removed tree | commitdiff
2014-12-05 gmungocJAL-1609 refactored colour by sequence command, now... tree | commitdiff
2014-12-05 gmungocMerge branch 'Release_2_8_2_Branch' of local repository... tree | commitdiff
2014-12-03 gmungocJAL-1609 wip on Chimera colour by sequence tree | commitdiff
2014-12-03 Jim ProcterJAL-1517 disable desktop 'take snapshot' menu item... tree | commitdiff
2014-12-01 Jim ProcterJAL-1199 JAL-1569 incremental patch allow non-standard... tree | commitdiff
2014-12-01 Jim ProcterJAL-795 hack to ignore black colour in annotation element. tree | commitdiff
2014-12-01 Jim ProcterJAL-1601 ignore the JABA Jpred client in Jalview 2... tree | commitdiff
2014-12-01 Jim ProcterMerge branch 'bug/JAL-1610refAnnotationsInViews' into... tree | commitdiff
2014-12-01 Jim ProcterMerge branch 'bug/JAL-1610refAnnotationsInViews' into... tree | commitdiff
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