2016-03-22 |
gmungoc | JAL-1705 add xref seqs to 'parent' dataset only if... |
tree | commitdiff |
2016-03-21 |
gmungoc | JAL-2029 further fixes to get correct xrefs and xrefs... |
tree | commitdiff |
2016-03-21 |
gmungoc | Merge branch 'develop' into features/JAL-653_JAL-1766_h... |
tree | commitdiff |
2016-03-21 |
gmungoc | JAL-1855 dbfetch from /ena_sequence/, /ena_coding/ |
tree | commitdiff |
2016-03-21 |
gmungoc | JAL-2029 many-to-many EnsemblCDS-to-Uniprot mappings |
tree | commitdiff |
2016-03-21 |
tcofoegbu | mungo merge |
tree | commitdiff |
2016-03-21 |
tcofoegbu | JAL-1667 Changed PDBSearchPanel's search result layout... |
tree | commitdiff |
2016-03-16 |
gmungoc | Merge branch 'develop' of https://source.jalview.org... |
tree | commitdiff |
2016-03-16 |
gmungoc | JAL-1705 xref ENST to correct (ENSP) accession id |
tree | commitdiff |
2016-03-16 |
tcofoegbu | JAL-2028 improvment to the displayed column customisation |
tree | commitdiff |
2016-03-15 |
gmungoc | Merge branch 'develop' into features/JAL-653_JAL-1766_h... mungo_develop |
tree | commitdiff |
2016-03-15 |
gmungoc | JAL-2016 corrected Javadoc, added test for anonymous... |
tree | commitdiff |
2016-03-15 |
gmungoc | JAL-2016 FeatureSettingsI now FeatureSettingsModelI |
tree | commitdiff |
2016-03-15 |
gmungoc | JAL-1705 code tidy/comment only |
tree | commitdiff |
2016-03-15 |
gmungoc | JAL-1705 compute reverse complement of variants on... |
tree | commitdiff |
2016-03-11 |
tcofoegbu | JAL-1478 Fixed ArrayIndexOutOfBoundsException while... |
tree | commitdiff |
2016-03-11 |
tcofoegbu | merge |
tree | commitdiff |
2016-03-11 |
tcofoegbu | JAL-2026 Bug fix for best quality filter |
tree | commitdiff |
2016-03-11 |
gmungoc | Merge branch 'develop' into features/JAL-653_JAL-1766_h... |
tree | commitdiff |
2016-03-11 |
gmungoc | JAL-1270 unit test for SequenceIdMatcher.SeqIdName |
tree | commitdiff |
2016-03-11 |
gmungoc | JAL-1705 check Retry-After response header |
tree | commitdiff |
2016-03-11 |
gmungoc | JAL-1705 javadoc added only |
tree | commitdiff |
2016-03-11 |
gmungoc | JAL-1705 refactoring etc for fetching Ensembl --> Uniprot |
tree | commitdiff |
2016-03-10 |
tcofoegbu | JAL-2025 added code to stanitise query for structure... |
tree | commitdiff |
2016-03-10 |
tcofoegbu | JAL-2024 code to enforce case insensitivity for manual... |
tree | commitdiff |
2016-03-07 |
gmungoc | JAL-2023 CDS sequences added to / share alignment dataset |
tree | commitdiff |
2016-03-04 |
gmungoc | JAL-1705 EnsemblGenomes a top level db source |
tree | commitdiff |
2016-03-04 |
gmungoc | JAL-1705 parse 'description' from GFF as sequence descr... |
tree | commitdiff |
2016-03-03 |
tcofoegbu | JAL-1919 updated unicode mapping symbol |
tree | commitdiff |
2016-03-03 |
gmungoc | JAL-1705 include stop codons in derived CDS; support... |
tree | commitdiff |
2016-03-02 |
gmungoc | JAL-1705 include any unmapped protein start 'X' when... |
tree | commitdiff |
2016-03-01 |
gmungoc | Merge branch 'develop' into features/JAL-653_JAL-1766_h... |
tree | commitdiff |
2016-03-01 |
gmungoc | JAL-1705 align CDS to transcripts |
tree | commitdiff |
2016-03-01 |
gmungoc | JAL-1705 align CDS and peptide products to transcripts |
tree | commitdiff |
2016-02-26 |
tcofoegbu | JAL-2009 reverted 'RES NUM' feature back to 'RESNUM' |
tree | commitdiff |
2016-02-26 |
tcofoegbu | JAL-1994 updated implementation for broken tests |
tree | commitdiff |
2016-02-26 |
tcofoegbu | JAL-1994 fix for broken tests |
tree | commitdiff |
2016-02-25 |
gmungoc | Merge branch 'develop' into features/JAL-653_JAL-1766_h... |
tree | commitdiff |
2016-02-23 |
tcofoegbu | JAL-1720 renamed Structure Chooser filters according... |
tree | commitdiff |
2016-02-22 |
tcofoegbu | JAL-1720 JAL-2002 improvement for 'uniprot coverage... |
tree | commitdiff |
2016-02-22 |
tcofoegbu | JAL-1944 bugfix for error when exporting hidden sequenc... |
tree | commitdiff |
2016-02-22 |
gmungoc | JAL-1705 first pass at applying preset feature colourin... |
tree | commitdiff |
2016-02-20 |
gmungoc | Merge branch 'mungo_develop' into features/JAL-653_JAL... |
tree | commitdiff |
2016-02-20 |
gmungoc | Merge branch 'JAL-1956_featureStyles' into features... |
tree | commitdiff |
2016-02-20 |
gmungoc | JAL-2016 first draft of pre-set feature colour scheme |
tree | commitdiff |
2016-02-20 |
gmungoc | Merge branch 'develop' into features/JAL-653_JAL-1766_h... |
tree | commitdiff |
2016-02-19 |
gmungoc | JAL-1705 handle case of sequence with no dataset sequence |
tree | commitdiff |
2016-02-19 |
gmungoc | JAL-1705 regular expression updates, tests, other refac... |
tree | commitdiff |
2016-02-19 |
gmungoc | JAL-1705 refactor show products, set initial split... |
tree | commitdiff |
2016-02-19 |
gmungoc | JAL-1705 more lenient test for 'sequence retrieved' |
tree | commitdiff |
2016-02-19 |
gmungoc | JAL-1705 return Ensembl genes for model species for... |
tree | commitdiff |
2016-02-19 |
gmungoc | JAL-1705 JAL-1191 more terms added to hard-coded version |
tree | commitdiff |
2016-02-19 |
gmungoc | JAL-1706 reverted setting start position as too confusi... |
tree | commitdiff |
2016-02-19 |
gmungoc | JAL-1705 lenient DBRef matcher added (accession id... |
tree | commitdiff |
2016-02-19 |
gmungoc | JAL-1705 helper method for mapping excluding stop codon |
tree | commitdiff |
2016-02-19 |
tcofoegbu | JAL-2009 Codes to enable storing inserted residues... |
tree | commitdiff |
2016-02-12 |
gmungoc | JAL-1270 remove trailing space + test |
tree | commitdiff |
2016-02-12 |
gmungoc | JAL-1705 various refactoring towards Uniprot-to-Ensembl... |
tree | commitdiff |
2016-02-12 |
gmungoc | JAL-1191 additions to SOLite, tweak to test |
tree | commitdiff |
2016-02-12 |
gmungoc | JAL-1705 take feature ID for description if nothing... |
tree | commitdiff |
2016-02-12 |
gmungoc | JAL-282 wrap very long id in tooltip |
tree | commitdiff |
2016-02-12 |
gmungoc | JAL-1705 JAL-1686 stronger SequenceFeature.equals(... |
tree | commitdiff |
2016-02-12 |
gmungoc | JAL-2010 simple prototype of 'Highlight Selection'... |
tree | commitdiff |
2016-02-12 |
gmungoc | JAL-2008 updates for String[] to List<String> change |
tree | commitdiff |
2016-02-12 |
gmungoc | JAL-2008 avoid unnecessary repaints; signatures changed... |
tree | commitdiff |
2016-02-12 |
gmungoc | Merge branch 'develop' into |
tree | commitdiff |
2016-02-09 |
tcofoegbu | JAL-1976 catch and handle OOM Error |
tree | commitdiff |
2016-02-09 |
tcofoegbu | JAL-1976 Added progress indicators for HTML_SVG and... |
tree | commitdiff |
2016-02-09 |
tcofoegbu | JAL-1975 updated image export pipeline to produce more... |
tree | commitdiff |
2016-02-09 |
tcofoegbu | JAL-1957 deleted stale comment |
tree | commitdiff |
2016-02-09 |
tcofoegbu | merge |
tree | commitdiff |
2016-02-09 |
tcofoegbu | JAL-1957 enabled multi-chain mapping and highlight... |
tree | commitdiff |
2016-02-05 |
gmungoc | JAL-2006 scale even very small score ranges to a usable... |
tree | commitdiff |
2016-02-04 |
gmungoc | Merge branch 'develop' into features/JAL-653_JAL-1766_h... |
tree | commitdiff |
2016-02-04 |
gmungoc | JAL-2005 added (stable) sort methods parameterised by |
tree | commitdiff |
2016-02-04 |
gmungoc | JAL-599 bug fixed so array of visible types is populated |
tree | commitdiff |
2016-02-04 |
gmungoc | JAL-1705 temporary variable to aid inspection in debugger |
tree | commitdiff |
2016-02-04 |
gmungoc | JAL-1705 additional tests, validation regexp tweaks... |
tree | commitdiff |
2016-02-04 |
gmungoc | JAL-2003 export features on alignment, not alignment... |
tree | commitdiff |
2016-02-01 |
gmungoc | JAL-1705 further unit tests |
tree | commitdiff |
2016-02-01 |
gmungoc | JAL-1705 set Uniprot xref as 'source dbref' (for SIFTS... |
tree | commitdiff |
2016-02-01 |
gmungoc | JAL-1191 more terms added to SequenceOntologyLite |
tree | commitdiff |
2016-02-01 |
gmungoc | Merge branch 'develop' into features/JAL-653_JAL-1766_h... |
tree | commitdiff |
2016-02-01 |
gmungoc | JAL-1705 JAL-1191 SequenceOntologyLite added as hard... |
tree | commitdiff |
2016-01-30 |
gmungoc | JAL-1705 refactored cross-reference fetching (CCDS... |
tree | commitdiff |
2016-01-29 |
tcofoegbu | JAL-1979 refactor out duplicated similar block of code... |
tree | commitdiff |
2016-01-29 |
gmungoc | JAL-1705 fetch Uniprot and PDB xrefs for Ensembl protei... |
tree | commitdiff |
2016-01-29 |
gmungoc | JAL-1705 copy feature settings when opening a split... |
tree | commitdiff |
2016-01-28 |
gmungoc | JAL-1705 refine feature copying to including 5' and... |
tree | commitdiff |
2016-01-28 |
gmungoc | JAL-1705 tests added, minor bugfix and refactoring |
tree | commitdiff |
2016-01-28 |
gmungoc | Merge branch 'develop' into JAL-1705_trialMerge |
tree | commitdiff |
2016-01-28 |
gmungoc | JAL-1705 merge contiguous ranges when constructing... |
tree | commitdiff |
2016-01-27 |
gmungoc | JAL-1705 add exon name to features and render on peptid... |
tree | commitdiff |
2016-01-27 |
tcofoegbu | JAL-1479 fixed off-by-one error in SIFTS mapping output... |
tree | commitdiff |
2016-01-27 |
gmungoc | JAL-1705 use GET for single queries; set gene name... |
tree | commitdiff |
2016-01-26 |
gmungoc | JAL-1705 derive transcript sequences from gene sequence... |
tree | commitdiff |
2016-01-26 |
tcofoegbu | JAL-1999 JAL-1479 implemented configurable fail-safe... |
tree | commitdiff |
2016-01-25 |
tcofoegbu | JAL-1998 bugfix for division by zero error for PDB... |
tree | commitdiff |
2016-01-25 |
gmungoc | JAL-1705 EnsemblGene added, and related refactoring |
tree | commitdiff |
2016-01-25 |
gmungoc | JAL-1997 database browser support tooltip if available |
tree | commitdiff |
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