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JAL-1553 merge commit
[jalview.git]
/
src
/
2015-01-10
Charles Ofoegbu
JAL-1553 merge commit
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commitdiff
2015-01-10
Charles Ofoegbu
JAL-1553 implementation of column selection by annotati...
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commitdiff
2015-01-09
Jim Procter
JAL-1483 formatting
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commitdiff
2015-01-09
Jim Procter
JAL-1483 remember to look at base dataset sequence...
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commitdiff
2015-01-07
Jim Procter
Merge branch 'develop' into JAL-1483_29dev
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commitdiff
2015-01-07
Jim Procter
JAL-1483 patches to make test case pass: hamming distan...
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commitdiff
2015-01-07
Jim Procter
JAL-1483 source formatting
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commitdiff
2015-01-07
Jim Procter
JAL-1483 refactor NJTree constructor to allow preconfig...
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commitdiff
2015-01-07
Jim Procter
JAL-1483 register feature similarity model
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commitdiff
2015-01-07
Jim Procter
JAL-1483 null features not displayed
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commitdiff
2015-01-07
Jim Procter
JAL-1483 check dataset for features if none found on...
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commitdiff
2015-01-07
Jim Procter
JAL-1483 organise imports
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commitdiff
2015-01-07
Jim Procter
JAL-1483 making type visible also adds it to registry
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commitdiff
2014-12-28
gmungoc
Merge branch 'features/JAL-1596ChimeraREST' into develop
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commitdiff
2014-12-22
Charles Ofoegbu
Patch to synchronize title svg and allignment svg scrolling
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commitdiff
2014-12-22
Jim Procter
Merge: 497958b 68dcaa7
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commitdiff
2014-12-15
Charles Ofoegbu
update HtmlSvgOutput to ignore browser invocation when...
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commitdiff
2014-12-15
Charles Ofoegbu
update HtmlSvgOutput to ignore browser invocation when...
features/JAL-1605_html-svg-export
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commitdiff
2014-12-14
Mungo Carstairs
JAL-1596 set HTTP 1.1 in HttpClient
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commitdiff
2014-12-09
gmungoc
JAL-1616 loading of datasets from XML patched
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commitdiff
2014-12-08
Charles Ofoegbu
merge commit
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commitdiff
2014-12-08
Charles Ofoegbu
JAL-1613 hotfix for duplicated sequence after pairwise...
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commitdiff
2014-12-08
Charles Ofoegbu
Added annotation export configuration for Html export...
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commitdiff
2014-12-05
Charles Ofoegbu
Merge branch 'features/JAL-1605_html-svg-export' into...
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commitdiff
2014-12-05
Charles Ofoegbu
JAL-1605 added command line support for html export...
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commitdiff
2014-12-05
Charles Ofoegbu
modified html css
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commitdiff
2014-12-05
Charles Ofoegbu
JAL-1605 merge commit
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commitdiff
2014-12-05
Charles Ofoegbu
Change the Html export to utilize svg
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commitdiff
2014-12-05
gmungoc
JAL-1614 flag 'protein' removed
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commitdiff
2014-12-05
gmungoc
JAL-1614 flag 'protein' removed
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commitdiff
2014-12-05
gmungoc
JAL-1609 refactored colour by sequence command, now...
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commitdiff
2014-12-05
gmungoc
Merge branch 'Release_2_8_2_Branch' of local repository...
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commitdiff
2014-12-03
gmungoc
JAL-1609 wip on Chimera colour by sequence
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commitdiff
2014-12-03
Jim Procter
JAL-1517 disable desktop 'take snapshot' menu item...
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commitdiff
2014-12-01
Jim Procter
JAL-1199 JAL-1569 incremental patch allow non-standard...
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commitdiff
2014-12-01
Jim Procter
JAL-795 hack to ignore black colour in annotation element.
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commitdiff
2014-12-01
Jim Procter
JAL-1601 ignore the JABA Jpred client in Jalview 2...
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commitdiff
2014-12-01
Jim Procter
Merge branch 'bug/JAL-1610refAnnotationsInViews' into...
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commitdiff
2014-12-01
Jim Procter
Merge branch 'bug/JAL-1610refAnnotationsInViews' into...
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commitdiff
2014-11-28
Jim Procter
Merge branch 'JAL-1517_release282' into develop
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commitdiff
2014-11-28
gmungoc
JAL-1610 check reference annotations against alignment...
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commitdiff
2014-11-28
Jim Procter
JAL-1522 output installation type to stdout
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commitdiff
2014-11-28
Jim Procter
JAL-1522 remove build/deployment details imported from...
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commitdiff
2014-11-28
Jim Procter
JAL-1517 formatting
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commitdiff
2014-11-28
Jim Procter
JAL-1611 revise log level to reduce verbosity
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commitdiff
2014-11-28
Jim Procter
JAL-1583 javadoc and fix constructor signature
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commitdiff
2014-11-28
Jim Procter
JAL-1604 formatting
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commitdiff
2014-11-28
Jim Procter
JAL-1604 revised wording and internationalised dialog
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commitdiff
2014-11-28
Jim Procter
JAL-1583 back out original fix and simply check MSAWSTh...
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commitdiff
2014-11-28
Jim Procter
JAL-1583 formatting
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commitdiff
2014-11-28
Jim Procter
JAL-1583 new validInput flag set according to validity...
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commitdiff
2014-11-28
Jim Procter
JAL-1583 refactored addInternalFrame to allow webservic...
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commitdiff
2014-11-28
Jim Procter
JAL-1517 formatting/tidy
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commitdiff
2014-11-28
gmungoc
JAL-1596 first REST interface coded
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commitdiff
2014-11-27
Jim Procter
Merge branch 'patchJAL-674_offset' into Release_2_8_2_B...
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commitdiff
2014-11-27
Jim Procter
Merge branch 'patchJAL-674_offset' into develop
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commitdiff
2014-11-27
Jim Procter
JAL-674 add sequence associated annotation rows to...
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commitdiff
2014-11-27
Jim Procter
JAL-1177 JAL-905 cannot recover sequences from dataset...
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commitdiff
2014-11-27
Jim Procter
JAL-674 avoid writing \0 for chain code
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commitdiff
2014-11-27
Jim Procter
Merge branch 'patchJAL-674_offset' into develop
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commitdiff
2014-11-27
Jim Procter
Merge branch 'patchJAL-674_offset' into Release_2_8_2_B...
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commitdiff
2014-11-27
Jim Procter
JAL-674 patch to fix bug with showing reference annotat...
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commitdiff
2014-11-27
Jim Procter
JAL-674 formatting
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commitdiff
2014-11-27
Jim Procter
JAL-674 unused variable
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commitdiff
2014-11-27
gmungoc
JAL-1603 if Chimera selected in Preferences, warn if...
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commitdiff
2014-11-27
gmungoc
Merge branch 'Release_2_8_2_Branch' of https://source...
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commitdiff
2014-11-27
Jim Procter
JAL-674 JAL-966 new method to retrieve all views
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commitdiff
2014-11-27
Jim Procter
organise imports
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commitdiff
2014-11-27
Jim Procter
JAL-966 promote getName to an api method
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commitdiff
2014-11-27
Charles Ofoegbu
Merge branch 'bug/JAL-1604_Entire-alignment-submission...
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commitdiff
2014-11-27
Charles Ofoegbu
JAL-1604 Entire sequence submision for MSA job bugfix
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commitdiff
2014-11-27
Charles Ofoegbu
Merge branch 'bug/JAL-1583_MSA_webservice_validation...
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commitdiff
2014-11-27
Charles Ofoegbu
Merge branch 'bug/JAL-1583_MSA_webservice_validation...
tree
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commitdiff
2014-11-27
Charles Ofoegbu
modified regex for sequence validation
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commitdiff
2014-11-27
gmungoc
Merge branch 'Release_2_8_2_Branch' of https://source...
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commitdiff
2014-11-26
Charles Ofoegbu
Merge branch 'bug/JAL-207_pairwise-alignment-context...
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commitdiff
2014-11-26
Charles Ofoegbu
Merge branch 'bug/JAL-207_pairwise-alignment-context...
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commitdiff
2014-11-26
Charles Ofoegbu
JAL-207 pairwise alignment sequence contexts propergati...
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commitdiff
2014-11-26
Charles Ofoegbu
Merge branch 'bug/JAL-998_wrap-sequence-tooltip' into...
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commitdiff
2014-11-26
Charles Ofoegbu
Merge branch 'bug/JAL-998_wrap-sequence-tooltip' into...
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commitdiff
2014-11-26
Charles Ofoegbu
JAL-998 fixed empty tooltip bug when only one sequence...
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commitdiff
2014-11-26
Jim Procter
Merge branch 'JAL-674_fixannotlabels' into develop
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commitdiff
2014-11-26
Jim Procter
JAL-674 make RNAML-extracted secondary structure lines...
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commitdiff
2014-11-26
Jim Procter
JAL-1578 fix logic for showing score when no descriptio...
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commitdiff
2014-11-26
Jim Procter
JAL-674 JAL-1578 commented code for displaying annotati...
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commitdiff
2014-11-26
Jim Procter
JAL-674 friendly name for PDB file included in secondar...
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commitdiff
2014-11-26
Jim Procter
JAL-674 employ the provided DNA/Protein matrix string...
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commitdiff
2014-11-26
Jim Procter
JAL-674 disable addition of PDBRESNUM annotation line
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commitdiff
2014-11-26
Jim Procter
JAL-674 nicer temperature factor labelling and include...
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commitdiff
2014-11-26
gmungoc
JAL-1528 NullPointer check / more informative PDB fetch...
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commitdiff
2014-11-25
Jim Procter
Merge branch 'bug/JAL-689' into develop
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commitdiff
2014-11-25
Jim Procter
fix for JAL-689 ensure fastpainting flag set only when...
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commitdiff
2014-11-25
Jim Procter
formatting
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commitdiff
2014-11-25
Jim Procter
patch for JAL-1599 - annotation row constructed by...
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commitdiff
2014-11-25
Charles Ofoegbu
merge commit
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commitdiff
2014-11-25
Charles Ofoegbu
merge commit
features/JAL-1469_svg-output-for-figure-export
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commitdiff
2014-11-25
Charles Ofoegbu
JAL-1469 Added SVGOptions.java for lineart/text renderi...
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commitdiff
2014-11-25
gmungoc
JFAL-1594 fix Undo bug; enum EditCommand.Action; basic...
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commitdiff
2014-11-24
Jim Procter
Merge branch 'JAL-1569_wuss_vienna_broke' into develop
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commitdiff
2014-11-24
Jim Procter
Merge branch 'JAL-1569_wuss_vienna_broke' into Release_...
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commitdiff
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