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JAL-98 refactor bleachColour() to ColorUtils
[jalview.git]
/
src
/
2016-09-29
gmungoc
JAL-2213 made RESNUM constant private (not used elsewhe...
tree
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commitdiff
2016-09-29
gmungoc
JAL-2213 corrected wait for files to load in Jmol;...
tree
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commitdiff
2016-09-29
gmungoc
JAL-2237 apply default filter as sort in initial search
tree
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commitdiff
2016-09-29
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-09-29
Jim Procter
JAL-2236 include associated sequence id for annotation...
tree
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commitdiff
2016-09-29
Jim Procter
Merge branch 'patch/JAL-2238_tcoffee_subgroups' into...
tree
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commitdiff
2016-09-29
Jim Procter
JAL-2236 fix: bail if no context available for subgroup
tree
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commitdiff
2016-09-29
gmungoc
JAL-1903 increase REST reply timeout from 5 to 15 seconds
tree
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commitdiff
2016-09-28
Jim Procter
JAL-2235 raise exceptions if self reference or referenc...
tree
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commitdiff
2016-09-28
Jim Procter
JAL-2210 patch for when no DBRefs on sequence
tree
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commitdiff
2016-09-28
Jim Procter
JAL-2210 instrument setDBRefs to call ensurePrimaries
tree
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commitdiff
2016-09-28
Jim Procter
JAL-2210 JAL-2232 check response code before attempting...
tree
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commitdiff
2016-09-28
Jim Procter
JAL-2232 extract EMBLCDS refs from EMBL refs on Uniprot...
tree
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commitdiff
2016-09-27
gmungoc
JAL-2233 less verbose logging for Jmol
tree
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commitdiff
2016-09-27
Jim Procter
Merge branch 'develop' into bug/JAL-2210_ensembl_unipro...
tree
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commitdiff
2016-09-27
Jim Procter
JAL-2210 formatting
tree
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commitdiff
2016-09-27
Jim Procter
JAL-2210 report stack trace for unexpected exceptions
tree
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commitdiff
2016-09-27
Jim Procter
JAL-2210 promote direct dbrefs from verified sources...
tree
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commitdiff
2016-09-27
Jim Procter
JAL-2210 resolve todo - addDBRef adds to dataset sequen...
tree
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commitdiff
2016-09-27
gmungoc
JAL-2231 save preferred scroll height _without_ progres...
tree
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commitdiff
2016-09-27
gmungoc
JAL-2230 use correct mapping to transfer features to...
tree
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commitdiff
2016-09-26
gmungoc
JAL-98 bug fix, string optimisation, sorted AA properties
tree
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commitdiff
2016-09-26
gmungoc
JAL-98 don't include gaps in maxResidue!
tree
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commitdiff
2016-09-26
gmungoc
JAL-98 generalised increment() to add() and made faster
tree
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commitdiff
2016-09-24
Jim Procter
Merge branch 'releases/Release_2_10_Branch' into develop
tree
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commitdiff
2016-09-23
gmungoc
JAL-98 performance tweaks to use of SparseIntArray
tree
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commitdiff
2016-09-23
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-09-23
tcofoegbu
JAL-2164 JAL-1919 fixed failed revert commit
tree
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commitdiff
2016-09-23
Jim Procter
JAL-2214 fix docs (consistent and correct base pair...
tree
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commitdiff
2016-09-23
gmungoc
JAL-98 first working version
tree
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commitdiff
2016-09-23
gmungoc
JAL-2214 Javadoc
tree
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commitdiff
2016-09-23
gmungoc
JAL-98 use SparseIntArray (wip)
tree
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commitdiff
2016-09-23
gmungoc
JAL-98 Android SparseIntArray added
tree
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commitdiff
2016-09-22
gmungoc
JAL-1421 use declared type of ResidueProperties.propHash
tree
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commitdiff
2016-09-22
gmungoc
JAL-1421 typed ResidueProperties.propHash; JAL-2176...
tree
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commitdiff
2016-09-22
gmungoc
JAL-2216 null currentAlignFrame on close all windows...
tree
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commitdiff
2016-09-22
gmungoc
JAL-2216 finalize call super.finalize()
tree
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commitdiff
2016-09-22
gmungoc
JAL-2216 finalise corrected to finalize
tree
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commitdiff
2016-09-22
gmungoc
JAL-2216 explicitly null AnnotationPanel and Annotation...
tree
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commitdiff
2016-09-22
gmungoc
JAL-2216 finalize() refactored so not called programmat...
tree
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commitdiff
2016-09-22
gmungoc
JAL-2216 new dispose() method to null references
tree
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commitdiff
2016-09-22
gmungoc
JAL-2216 finalize call super.finalize()
tree
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commitdiff
2016-09-21
Jim Procter
JAL-2214 JAL-1841 compute canonical, canonicalAndWobble...
tree
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commitdiff
2016-09-21
Jim Procter
JAL-1841 JAL-2215 add the ‘ignore gaps’ structure conse...
tree
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commitdiff
2016-09-21
Jim Procter
JAL-2214 test for strict Watson-Crick pairing
tree
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commitdiff
2016-09-21
Jim Procter
JAL-2215 fix - trigger alignment update when ‘ignore...
tree
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commitdiff
2016-09-20
gmungoc
JAL-1306 calculate Quality also when Conservation not...
tree
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commitdiff
2016-09-19
gmungoc
JAL-2118 reorder annotations after add/delete/hide...
tree
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commitdiff
2016-09-19
Jim Procter
Merge branch 'develop' of source.jalview.org/git/jalvie...
tree
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commitdiff
2016-09-19
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-09-19
gmungoc
JAL-2172 test and code updates for readonly selection...
tree
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commitdiff
2016-09-19
tcofoegbu
merge
tree
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commitdiff
2016-09-18
Jim Procter
JAL-1795 JAL-2206 prevent NPE when no data returned...
tree
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commitdiff
2016-09-16
gmungoc
JAL-2157 JAL-1803 refactored Sequence.updatePDBIds...
tree
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commitdiff
2016-09-16
gmungoc
JAL-2183 don't open two free text panels; give input...
tree
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commitdiff
2016-09-16
gmungoc
JAL-2183 avoid duplicate closeDialog()
tree
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commitdiff
2016-09-16
gmungoc
JAL-2164 removed unused parameters from JmolParser...
tree
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commitdiff
2016-09-14
Jim Procter
JAL-2164 create RESNUM features with padding the same...
tree
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commitdiff
2016-09-13
tcofoegbu
JAL-2164 JAL-1919 disabled PDB file parser configuratio...
tree
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commitdiff
2016-09-13
tcofoegbu
Revert "JAL-2164 JAL-1919 disabled and removed PDB...
tree
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commitdiff
2016-09-13
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-09-13
tcofoegbu
JAL-2164 JAL-1919 disabled and removed PDB file parser...
tree
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commitdiff
2016-09-13
gmungoc
JAL-2196 refactor PDBEntry.getProperty,setProperty...
tree
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commitdiff
2016-09-13
gmungoc
JAL-1803 extracted class ChainId to jalview.util.CaseIn...
tree
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commitdiff
2016-09-13
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-09-13
tcofoegbu
JAL-2195 bug fix to enable restoring jmol session save...
tree
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commitdiff
2016-09-12
Jim Procter
Merge branch 'patch/JAL-2068_JAL-2169_multiviewannotwor...
tree
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commitdiff
2016-09-09
tcofoegbu
merge
tree
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commitdiff
2016-09-08
tcofoegbu
JAL-2164 renamed 'DEFAULT_STRUCTURE_FORMAT' property...
tree
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commitdiff
2016-09-07
Jim Procter
Merge branch 'develop' into bug/JAL-1803_JAL-2157
tree
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commitdiff
2016-09-07
Jim Procter
JAL-2191 comments re chimera view code redundancy and...
tree
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commitdiff
2016-09-07
Jim Procter
JAL-282 TODO - Sequence name from PDB had redundant...
tree
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commitdiff
2016-09-07
Jim Procter
JAL-1803 transfer mapped chain’s PDBEntry to the *datas...
tree
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commitdiff
2016-09-07
Jim Procter
JAL-1803 JAL-1919 set type when structure file is parsed
tree
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commitdiff
2016-09-07
Jim Procter
JAL-1803 first pass at updatePDBEntry
tree
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commitdiff
2016-09-06
gmungoc
JAL-2106 DBRefEntry.isPrimary() renamed isPrimaryCandid...
tree
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commitdiff
2016-09-06
gmungoc
JAL-2147 additional test coverage for findMappingsForSe...
tree
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commitdiff
2016-09-05
gmungoc
JAL-2154 made Java 7 compatible
tree
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commitdiff
2016-09-05
gmungoc
JAL-2106 increased coverage for testGetPrimaryDbRefs
tree
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commitdiff
2016-09-05
gmungoc
JAL-2106 corrections to DBRefEntry.isPrimary code and...
tree
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commitdiff
2016-09-04
Jim Procter
JAL-1919 preserve filename on restore of project so...
tree
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commitdiff
2016-09-04
Jim Procter
JAL-2148 JAL-1803 JAL-1919 resolve type for mmCIF loade...
tree
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commitdiff
2016-09-04
Jim Procter
JAL-1803 recover type field faithfully for mmCIF/PDB...
tree
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commitdiff
2016-09-04
Jim Procter
JAL-1803 restore property array for a sequence’s associ...
tree
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commitdiff
2016-09-04
Jim Procter
JAL-1803 chainCode moved onto property hashtable as...
tree
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commitdiff
2016-09-01
Jim Procter
Merge branch 'bug/JAL-2034_fix' into develop
tree
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commitdiff
2016-09-01
Jim Procter
JAL-2034 - remember to reset needsOverviewUpdate at...
tree
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commitdiff
2016-09-01
gmungoc
JAL-2077 check isPopupTrigger in mouseReleased not...
tree
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commitdiff
2016-09-01
gmungoc
JAL-1421 add generics to NJTree, refactor recursive...
tree
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commitdiff
2016-09-01
Jim Procter
JAL-2034 check context of selection group to catch...
tree
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commitdiff
2016-09-01
gmungoc
JAL-2077 do nothing in mousePressed if right button...
tree
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commitdiff
2016-09-01
gmungoc
JAL-2077 force defer right-click handling to mouseRelea...
tree
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commitdiff
2016-09-01
Jim Procter
JAL-1803 JAL-2188 experimental:
tree
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commitdiff
2016-08-31
Jim Procter
JAL-1926 JAL-2106 source DB refs come from SequenceI...
tree
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commitdiff
2016-08-31
Jim Procter
JAL-1926 JAL-2106 resolve source DB refs using canonica...
tree
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commitdiff
2016-08-31
Jim Procter
JAL-1926 JAL-2106 fix PDB primary DBRef semantics:...
tree
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commitdiff
2016-08-31
gmungoc
JAL-2077 test isPopupTrigger in mouseReleased or mouseC...
tree
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commitdiff
2016-08-31
gmungoc
JAL-2077 more javadoc
tree
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commitdiff
2016-08-31
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-08-31
Jim Procter
JAL-2157 JAL-2154 simplify CanshowProducts code to...
tree
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commitdiff
next