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JAL-4034 button looks better also on other OSes with the 0 vertical insets
[jalview.git] / src /
2020-10-28 Jim ProcterJAL-3760 refactor nucleotide proportion test to per... tree | commitdiff
2020-10-28 Jim ProcterMerge branch 'bug/JAL-3760_protsTreatedAsNucleotides... tree | commitdiff
2020-10-28 Jim Procterfix for JAL-3765 tree | commitdiff
2020-10-27 Jim ProcterJAL-3700 JAL-3748 JAL-3763 don’t add stop codon via... tree | commitdiff
2020-10-22 gmungocJAL-3763 Javadoc, check for null, additional tests tree | commitdiff
2020-10-22 gmungocJAL-3751 only merge strictly contiguous ranges of mappings tree | commitdiff
2020-10-22 gmungocJAL-3763 test coverage for AlignedCodonFrame.markMapped... tree | commitdiff
2020-10-22 gmungocJAL-3763 failsafe check for null tree | commitdiff
2020-10-22 gmungocJAL-3763 refactored getCoveringMapping for virtual... tree | commitdiff
2020-10-22 gmungocJAL-3763 always make a new dataset sequence for CDS... tree | commitdiff
2020-10-22 gmungocJAL-3700 additions and corrections to unit tests tree | commitdiff
2020-10-22 gmungocJAL-3763 Javadoc, check for null, additional tests task/JAL-3763_newDatasetForCds tree | commitdiff
2020-10-22 gmungocJAL-3751 only merge strictly contiguous ranges of mappings tree | commitdiff
2020-10-22 gmungocJAL-3763 test coverage for AlignedCodonFrame.markMapped... tree | commitdiff
2020-10-20 Jim Procterfix for JAL-3765 tree | commitdiff
2020-10-15 gmungocJAL-3763 unused method removed tree | commitdiff
2020-10-08 gmungocJAL-3763 failsafe check for null tree | commitdiff
2020-10-08 gmungocJAL-3763 refactored getCoveringMapping for virtual... tree | commitdiff
2020-10-08 gmungocJAL-3763 always make a new dataset sequence for CDS... tree | commitdiff
2020-10-02 Jim ProcterJAL-3762 check for !args || args=="" before overwriting Jalview-JS/bug/JAL-3762_URLparamsOverrideInfoArg tree | commitdiff
2020-10-02 Jim ProcterJAL-3762 more typo fixing :q tree | commitdiff
2020-10-02 Jim ProcterJAL-3762 syntax error typo tree | commitdiff
2020-10-02 Jim ProcterJAL-3762 check if Info.args already defined before... tree | commitdiff
2020-09-29 Jim ProcterJAL-3760 refactor nucleotide proportion test to per... tree | commitdiff
2020-09-24 Jim ProcterJAL-3757 JAL-3689 use AppletFormat.checkProtocol to... tree | commitdiff
2020-09-23 Ben SoaresJAL-3757 JAL-3689 Fixed checks for URLs by adding check... tree | commitdiff
2020-09-23 Ben SoaresJAL-3633 ensure check both or https:// for urls tree | commitdiff
2020-09-23 Jim ProcterJAL-3748 not testing for sequence’s containment in... bug/JAL-3700_JAL-3748_reconstructCDSafterProteinMSA_for2_11_1_2 tree | commitdiff
2020-09-23 Jim ProcterJAL-3748 fix compilation error tree | commitdiff
2020-09-23 Jim ProcterJAL-3748 allow AlignedCodonFrame.covers to optionally... tree | commitdiff
2020-09-22 Jim ProcterJAL-3748 don’t trash start/end on SequenceI reconstruct... tree | commitdiff
2020-09-21 Jim ProcterMerge branch 'merge_review/JAL-3490_2_11_2_develop... tree | commitdiff
2020-09-17 Jim ProcterJAL-3741 http to https (and jar to jvp for exampleFile... tree | commitdiff
2020-09-17 Jim ProcterJAL-3750 parse protocol before checking if argument... tree | commitdiff
2020-09-17 gmungocJAL-3700 additions and corrections to unit tests bug/JAL-3700_mapSequenceSelection tree | commitdiff
2020-09-16 Jim ProcterJAL-3748 preserve sequence IDs from original alignment... tree | commitdiff
2020-09-16 Jim ProcterJAL-3748 recover complement alignment from complement... tree | commitdiff
2020-09-16 Jim ProcterJAL-3748 make findAlignedSequence require mapped from... tree | commitdiff
2020-09-16 Jim ProcterJAL-3748 pass a list to findAlignedSequence to return... tree | commitdiff
2020-09-16 Jim ProcterJAL-3700 JAL-3748 use AlignedCodonFrame.covers(seq... tree | commitdiff
2020-09-16 Jim ProcterJAL-3700 JAL-3748 AlignedCodonFrame.covers(seq,true... tree | commitdiff
2020-09-16 Jim ProcterMerge branch 'failingTest/JAL-3748_reconstructCDSafterP... tree | commitdiff
2020-09-16 gmungocJAL-3700 fix for propagation of sort commands tree | commitdiff
2020-09-16 gmungocJAL-3700 check for 'covering' mapping when matching... tree | commitdiff
2020-09-16 Jim ProcterJAL-3748 store an AlignmentView for the complement... tree | commitdiff
2020-09-14 Ben SoaresMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2020-09-14 Ben SoaresMerge branch 'feature/JAL-3615gzipXfam' into develop tree | commitdiff
2020-09-14 Ben SoaresJAL-3609 HiDPI scale setting done via system prop in... tree | commitdiff
2020-09-10 gmungocJAL-3518 removed unneeded override in ChimeraCommands tree | commitdiff
2020-09-10 gmungocJAL-2422 comments updated re ALTLOC handling tree | commitdiff
2020-09-03 gmungocJAL-3648 resize annotation panel after dragging to... tree | commitdiff
2020-09-03 Ben SoaresMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2020-09-03 gmungocJAL-3648 resize annotation panel after dragging to... tree | commitdiff
2020-09-02 Ben SoaresJAL-3280 Test for remote release build_properties file... tree | commitdiff
2020-09-01 Ben SoaresJAL-3280 fixes after CR-JAL-241. Now only checking... tree | commitdiff
2020-08-31 Ben SoaresJAL-3280 Pass appbase and appdir from getdown to jalvew... tree | commitdiff
2020-08-31 Jim ProcterJAL-3732 - sequences can be moved up/down in cursor... tree | commitdiff
2020-08-31 Jim ProcterJAL-3732 - sequences can be moved up/down in cursor... tree | commitdiff
2020-08-31 gmungocJAL-3018 Ensembl reviewed REST version updated to 13.0 tree | commitdiff
2020-08-31 gmungocJAL-1191 use Cache.log for logging tree | commitdiff
2020-08-31 gmungocJAL-1191 reduce logging level for warnings tree | commitdiff
2020-08-27 Ben SoaresMerge branch 'releases/Release_2_11_1_Branch' into... merge/JAL_1842+JAL-3509+releases_Release_2_11_1_Branch tree | commitdiff
2020-08-25 Jim ProcterJAL-3671 hardwire log4j.root logger to INFO to supress... tree | commitdiff
2020-08-24 gmungocJAL-3018 updated reviewed REST version to 12.0 tree | commitdiff
2020-08-21 Jim ProcterJAL-3675 2.11.1.1 java 8 compatible patch for JAL-3615... tree | commitdiff
2020-08-21 Jim ProcterJAL-3615 code tidy, improve unit test tree | commitdiff
2020-08-20 Ben SoaresJAL-2656 better read of (potential) gzip magic bytes tree | commitdiff
2020-08-18 gmungocJAL-2656 Java 8 compatible test for gzipped, refactored... tree | commitdiff
2020-08-18 gmungocJAL-3692 parse multiline CDS location correctly tree | commitdiff
2020-08-17 Jim ProcterMerge branch 'patch/JAL-3691_No_score_models_available... tree | commitdiff
2020-08-17 Jim ProcterMerge branch 'patch/JAL-3561_JAL-3660_fileformatexport_... tree | commitdiff
2020-08-17 Jim ProcterJAL-3490 don't init the combo box's history cache for... tree | commitdiff
2020-08-17 Jim ProcterJAL-3490 merged with 2.11.2 develop tree | commitdiff
2020-08-17 Jim ProcterMerge branch 'patch/Release_2_11_1_Branch_patch_JAL... tree | commitdiff
2020-08-17 Jim ProcterMerge branch 'task/JAL-3597memoryLeakTest' into develop tree | commitdiff
2020-08-17 Jim ProcterMerge branch 'patch/JAL-3597_for_Release_2_11_1_Branch... tree | commitdiff
2020-08-14 Ben SoaresJAL-3676 More explicit tooltip about resetting log... tree | commitdiff
2020-08-13 gmungocJAL-3597 additional references nulled, bug in test... tree | commitdiff
2020-08-12 Ben SoaresJAL-3676 Removed BACKUPFILESPRESETENTRY logging for... tree | commitdiff
2020-08-12 Ben SoaresMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2020-08-12 Jim ProcterMerge branch 'task/JAL-3608_property_set_laf_and_tests... tree | commitdiff
2020-08-12 Ben SoaresJAL-3608 Changes from code review CR-JAL-236 tree | commitdiff
2020-08-11 Jim ProcterJAL-3673 make sure font metrics are updated if dealing... tree | commitdiff
2020-08-11 Jim ProcterMerge branch 'bug/JAL-2983negativeSliderMin' into relea... tree | commitdiff
2020-08-11 gmungocJAL-3371 more fine-grained slider; set Param slider... tree | commitdiff
2020-08-10 gmungocJAL-3490 match count independent of contiguous matches... patch/Release_2_11_1_Branch_patch_JAL-3490 tree | commitdiff
2020-08-10 Jim ProcterJAL-3691 toUpperCase(Locale.ROOT) for all standard... tree | commitdiff
2020-08-10 Jim ProcterMerge branch 'releases/Release_2_11_1_Branch' into... tree | commitdiff
2020-08-10 Jim ProcterJAL-3628 JAL-3708 call Cache.initLogger() before using... tree | commitdiff
2020-08-09 Ben SoaresJAL-3691 Changed .toUppoerCase().startsWith(...) to... tree | commitdiff
2020-08-05 Ben SoaresJAL-3691 Changed .toUppoerCase().startsWith(...) to... tree | commitdiff
2020-08-05 Jim ProcterMerge branch 'patch/JAL-3692enaEndpointFlatfile' into... tree | commitdiff
2020-08-05 gmungocJAL-3692 parse multiline feature qualifiers and escaped... tree | commitdiff
2020-08-05 gmungocJAL-3692 parse multiline feature qualifiers and escaped... tree | commitdiff
2020-08-05 Jim ProcterMerge branch 'merge/JAL-3628+JAL-3608+JAL-3609+JAL... tree | commitdiff
2020-08-05 gmungocJAL-3700 fix for propagation of sort commands tree | commitdiff
2020-08-04 Ben SoaresJAL-3477 Added -help text for jvmmempc and jvmmemmax... tree | commitdiff
2020-08-04 Ben SoaresJAL-3477 Added -help text for jvmmempc and jvmmemmax... tree | commitdiff
2020-08-03 gmungocJAL-3700 check for 'covering' mapping when matching... tree | commitdiff
2020-08-03 gmungocJAL-3692 set CDS /product as EMBLCDSPROTEIN description tree | commitdiff
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