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JAL-3333 Sorry couldn't resist adding a bit of weighting to the rotation
[jalview.git] / test / jalview / datamodel / AlignmentTest.java
2019-03-04 gmungocMerge branch 'bug/JAL-3099alignmentVisibleWidth' into... blob | commitdiff
2018-11-28 gmungocJAL-3164 redraw complement overview on hide columns bug/JAL-3164complementOverview blob | commitdiff | diff to current
2018-09-10 gmungocJAL-3099 use Alignment.getVisibleWidth() where wanted bug/JAL-3099alignmentVisibleWidth blob | commitdiff | diff to current
2018-03-15 gmungocJAL-2893 enabling Get Crossreferences to ENSEMBLGENOMES blob | commitdiff | diff to current
2018-02-27 Jim ProcterMerge branch 'feature/JAL-2759' into merge/JAL-2759_2104 blob | commitdiff | diff to current
2018-02-05 Jim ProcterJAL-2780 JAL-2781 test AlignmentI.findAnnotations locat... blob | commitdiff | diff to current
2018-02-05 Jim ProcterJAL-2780 JAL-2781 - patch and first test for AlignmentI... blob | commitdiff | diff to current
2018-01-29 gmungocJAL-1270 testPadGaps() added blob | commitdiff | diff to current
2018-01-19 kiramtJAL-2759 Moved propagateInsertions out of HiddenColumns blob | commitdiff | diff to current
2017-07-24 gmungocspike branch updated from latest features/JAL-2446 blob | commitdiff | diff to current
2017-06-27 gmungocMerge branch 'develop' into features/JAL-2446NCList blob | commitdiff | diff to current
2017-06-14 gmungocJAL-2598 Sequence.getSequence return a copy of the... blob | commitdiff | diff to current
2017-06-09 gmungocJAL-2446 merged to spike branch blob | commitdiff | diff to current
2017-06-07 kiramtJAL-2591 More refactoring (incomplete) blob | commitdiff | diff to current
2017-05-15 Jim ProcterJAL-2507 fix test: knockon from capitalisation on secon... bug/JAL-2507_rnasecstrstockholm blob | commitdiff | diff to current
2017-04-27 Jim ProcterJAL-2494 test to cover AnnotatedCollectionI.findAnnotat... blob | commitdiff | diff to current
2017-03-31 gmungocJAL-2405 additional checks for circular reference in... blob | commitdiff | diff to current
2017-03-17 kiramtJAL-2437 Synchronization corrections and unit tests blob | commitdiff | diff to current
2017-01-06 gmungocMerge branch 'develop' into features/JAL-2360colourSche... blob | commitdiff | diff to current
2017-01-05 gmungocJAL-2374 unit test for (modified) Alignment.findGroup() blob | commitdiff | diff to current
2016-12-21 gmungocJAL-2360 Javadoc and test cases for findAnnotation blob | commitdiff | diff to current
2016-11-28 gmungocMerge branch 'develop' into trialMerge blob | commitdiff | diff to current
2016-11-25 gmungocMerge branch 'develop' into trialMerge blob | commitdiff | diff to current
2016-11-24 tcofoegbuJAL-2326 added setup method for JvOptionPane in all... features/JAL-2326_JOptionPane-refactoring blob | commitdiff | diff to current
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch blob | commitdiff | diff to current
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... blob | commitdiff | diff to current
2016-10-05 Jim ProcterJAL-2189 format tests blob | commitdiff | diff to current
2016-10-04 gmungocJAL-2232 added test that failed before last fix, passes... blob | commitdiff | diff to current
2016-08-30 Jim ProcterJAL-2154 javadoc, fix underloaded version of assertData... blob | commitdiff | diff to current
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum blob | commitdiff | diff to current
2016-08-29 Jim ProcterJAL-2154 Optional message parameter for assertDatasetNo... blob | commitdiff | diff to current
2016-08-29 Jim ProcterJAL-2154 new assertDatasetIsNormalised to trivially... blob | commitdiff | diff to current
2016-08-29 Jim ProcterJAL-2154 additional test that removing a duplicate... blob | commitdiff | diff to current
2016-08-22 Jim ProcterJAL-2154 always check dataset sequence for sequence... blob | commitdiff | diff to current
2016-08-22 Jim ProcterJAL-2154 patch verifyAlignment so it fails for duplicat... blob | commitdiff | diff to current
2016-08-22 Jim ProcterJAL-2154 tidy assert messages and fix test to verify... blob | commitdiff | diff to current
2016-08-22 Jim ProcterJAL-2154 test that verifyAlignment fails for duplicate... blob | commitdiff | diff to current
2016-08-19 Jim ProcterJAL-2154 testNG like assertAlignmentDatasetRefs static... blob | commitdiff | diff to current
2016-08-16 Jim ProcterJAL-2154 verify sequenceI/dataset refs for codonmappings blob | commitdiff | diff to current
2016-08-16 Jim ProcterJAL-2154 check alignment isn’t null before validating blob | commitdiff | diff to current
2016-08-16 Jim ProcterJAL-2154 new assert to check reference integrity for... blob | commitdiff | diff to current
2016-08-04 Jim ProcterJAL-2154 make sure all sequences referenced via DBRefEn... blob | commitdiff | diff to current
2016-07-18 Jim ProcterJAL-2110 JAL-2145 fix out of date test for 2baee069f9ed... blob | commitdiff | diff to current
2016-07-11 gmungocfile format enum wip changes blob | commitdiff | diff to current
2016-07-06 gmungocJAL-2110 AlignmentUtils.alignCdsAsProtein implemented blob | commitdiff | diff to current
2016-06-20 Jim ProcterJAL-2110 copy alcodonframes only if copy constructor... blob | commitdiff | diff to current
2016-06-19 Jim ProcterJAL-2110 JAL-2131 JAL-1765 remove reference to jalview... blob | commitdiff | diff to current
2016-04-11 tcofoegbuJAL-2054 Renamed getStartEnd in AlignFrame to getVisibl... blob | commitdiff | diff to current
2016-04-01 gmungocJAL-1705 reworked AlignmentUtils.makeCdsAlignment and... blob | commitdiff | diff to current
2016-01-05 gmungocJAL-653 updating 'align as' tests to match latest tweak... blob | commitdiff | diff to current
2015-12-22 gmungocJAL-653 realise virtual mappings and align when adding... blob | commitdiff | diff to current
2015-12-03 gmungocJAL-653 mappings always reside on the dataset alignment... blob | commitdiff | diff to current
2015-11-30 gmungocJAL-1270 constructor test added blob | commitdiff | diff to current
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 blob | commitdiff | diff to current
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright blob | commitdiff | diff to current
2015-09-22 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch blob | commitdiff | diff to current
2015-09-14 gmungocJAL-1880 handle sequence offsets properly when mapping... blob | commitdiff | diff to current
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... blob | commitdiff | diff to current
2015-09-10 Jim ProcterJAL-1645 licencing for new files in test and utils blob | commitdiff | diff to current
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports blob | commitdiff | diff to current
2015-07-23 tcofoegbuJAL-1805 modified test setup's so the are ran for group... blob | commitdiff | diff to current
2015-07-08 gmungocJAL-1759 merge from develop blob | commitdiff | diff to current
2015-07-07 tcofoegbuJAL-1805 test envirionment separation blob | commitdiff | diff to current
2015-06-23 Jim ProcterJAL-1782 JAL-1780 JAL-653 JAL-1892 update patched refac... blob | commitdiff | diff to current
2015-06-22 Jim ProcterJAL-1780 JAL-653 Format/AppletFormat import and export... blob | commitdiff | diff to current
2015-06-19 tcofoegbuJAL-1270 test suits import order refactor features/JAL-1270_JUnit-to-TestNG features/JAL-1782_JUnit-to-TestNG blob | commitdiff | diff to current
2015-06-19 tcofoegbuJAL-1270 JUnit to TestNG refactoring blob | commitdiff | diff to current
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch blob | commitdiff | diff to current
2014-10-13 gmungocJAL-1264 unneeded setup removed blob | commitdiff | diff to current
2014-10-13 gmungocJAL-1264 unit test corrected blob | commitdiff | diff to current
2014-10-10 gmungocJAL-1264 unit tests blob | commitdiff | diff to current