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JAL-3210 ben testing
[jalview.git]
/
test
/
jalview
/
datamodel
/
2016-10-03
gmungoc
JAL-2110 additional tests for setDatasetSequence, javad...
tree
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commitdiff
2016-09-28
Jim Procter
JAL-2210 JAL-2235 fix deriveSequence test for tightened...
tree
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commitdiff
2016-09-28
Jim Procter
JAL-2235 implicit test to check that exception is raise...
tree
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commitdiff
2016-09-19
gmungoc
JAL-2172 test and code updates for readonly selection...
tree
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commitdiff
2016-09-16
gmungoc
JAL-2157 JAL-1803 refactored Sequence.updatePDBIds...
tree
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commitdiff
2016-09-13
gmungoc
JAL-1803 tests added for PDBEntry.Type
tree
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commitdiff
2016-09-13
gmungoc
JAL-2196 refactor PDBEntry.getProperty,setProperty...
tree
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commitdiff
2016-09-13
gmungoc
JAL-1803 extracted class ChainId to jalview.util.CaseIn...
tree
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commitdiff
2016-09-06
gmungoc
JAL-2106 DBRefEntry.isPrimary() renamed isPrimaryCandid...
tree
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commitdiff
2016-09-05
gmungoc
JAL-2106 increased coverage for testGetPrimaryDbRefs
tree
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commitdiff
2016-09-05
gmungoc
JAL-2106 corrections to DBRefEntry.isPrimary code and...
tree
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commitdiff
2016-09-04
Jim Procter
JAL-1803 JAL-2106 patch tests for tighter PDB Primary...
tree
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commitdiff
2016-08-30
Jim Procter
JAL-2154 javadoc, fix underloaded version of assertData...
tree
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commitdiff
2016-08-30
Jim Procter
Merge branch 'develop' into merge/develop_bug/JAL-2154p...
tree
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commitdiff
2016-08-30
gmungoc
Merge branch 'develop' into features/filetypeEnum
tree
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commitdiff
2016-08-29
Jim Procter
JAL-2154 Optional message parameter for assertDatasetNo...
tree
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commitdiff
2016-08-29
Jim Procter
JAL-2154 new assertDatasetIsNormalised to trivially...
tree
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commitdiff
2016-08-29
Jim Procter
JAL-2154 additional test that removing a duplicate...
tree
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commitdiff
2016-08-26
gmungoc
Merge branch 'develop' into bug/JAL-1841rnaSecStr
tree
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commitdiff
2016-08-25
Jim Procter
JAL-2106 tighten DBRefEntry primary seq test for PDB
tree
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commitdiff
2016-08-25
Jim Procter
Merge branch 'refactor/JAL-2106_sourceDbRef_revision...
tree
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commitdiff
2016-08-25
Jim Procter
Merge branch 'develop' into refactor/JAL-2106_sourceDbR...
tree
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commitdiff
2016-08-24
Jim Procter
JAL-2106 TODO - verify Embl primary refs get added
tree
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commitdiff
2016-08-24
Jim Procter
JAL-2106 removed setSourceDBRef, refactor getSourceDBRe...
tree
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commitdiff
2016-08-24
Jim Procter
JAL-2106 stricter check for 1:1 mapping (same numbering...
tree
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commitdiff
2016-08-24
Jim Procter
JAL-2106 rejig test to minimally verify patch that...
tree
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commitdiff
2016-08-24
Jim Procter
JAL-2106 DBRefEntry.isPrimary() minimal test & implemen...
tree
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commitdiff
2016-08-23
Jim Procter
Merge branch 'develop' into bug/JAL-2154projectMappings
tree
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commitdiff
2016-08-23
gmungoc
JAL-2174 markColumns() refactored inside ColumnSelection
tree
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commitdiff
2016-08-22
Jim Procter
JAL-2154 always check dataset sequence for sequence...
tree
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commitdiff
2016-08-22
Jim Procter
JAL-2154 patch verifyAlignment so it fails for duplicat...
tree
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commitdiff
2016-08-22
Jim Procter
JAL-2154 tidy assert messages and fix test to verify...
tree
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commitdiff
2016-08-22
Jim Procter
JAL-2154 test that verifyAlignment fails for duplicate...
tree
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commitdiff
2016-08-19
Jim Procter
JAL-2154 testNG like assertAlignmentDatasetRefs static...
tree
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commitdiff
2016-08-18
gmungoc
Merge branch 'develop' into bug/JAL-1841rnaSecStr
tree
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commitdiff
2016-08-18
gmungoc
JAL-2001 return copy of selection in getSelected()
tree
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commitdiff
2016-08-16
Jim Procter
JAL-2154 verify sequenceI/dataset refs for codonmappings
tree
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commitdiff
2016-08-16
Jim Procter
JAL-2154 check alignment isn’t null before validating
tree
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commitdiff
2016-08-16
gmungoc
Merge branch 'develop' into bug/JAL-1841rnaSecStr
tree
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commitdiff
2016-08-16
gmungoc
JAL-2172 unit test added
tree
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commitdiff
2016-08-16
gmungoc
JAL-2171 matching bracket default character for rna...
tree
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commitdiff
2016-08-16
Jim Procter
JAL-2154 new assert to check reference integrity for...
tree
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commitdiff
2016-08-04
Jim Procter
JAL-2154 make sure all sequences referenced via DBRefEn...
tree
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commitdiff
2016-07-18
Jim Procter
JAL-2110 JAL-2145 fix out of date test for 2baee069f9ed...
tree
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commitdiff
2016-07-11
gmungoc
file format enum wip changes
tree
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commitdiff
2016-07-06
gmungoc
JAL-2110 AlignmentUtils.alignCdsAsProtein implemented
tree
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commitdiff
2016-07-06
gmungoc
JAL-2110 add 'mapFromId' to Mapping (for e.g. EMBL...
tree
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commitdiff
2016-07-06
gmungoc
JAL-2110 fixes and tests for adding dbrefs to EMBL...
tree
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commitdiff
2016-07-04
gmungoc
JAL-2110 added another test case (should fail but doesn't)
tree
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commitdiff
2016-07-04
gmungoc
Revert "JAL-2110 use shared alignment dataset when...
tree
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commitdiff
2016-07-04
gmungoc
JAL-2110 use shared alignment dataset when copying...
tree
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commitdiff
2016-06-30
gmungoc
JAL-2110 fixes and tests for synthesized EMBLCDSPROTEIN...
tree
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commitdiff
2016-06-29
gmungoc
Merge branch 'develop' into features/JAL-2110_crossRefD...
tree
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commitdiff
2016-06-27
gmungoc
JAL-1270 unit tests for HiddenSequences
tree
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commitdiff
2016-06-23
Jim Procter
JAL-2110 SequenceI.isProtein method
tree
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commitdiff
2016-06-21
Jim Procter
Merge branch 'features/JAL-2110_crossRefDuplications...
tree
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commitdiff
2016-06-21
Jim Procter
JAL-1270 ensure before/after clauses have at least...
tree
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commitdiff
2016-06-21
gmungoc
JAL-2113 tidy up canonicalisation of Uniprot xrefs...
tree
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commitdiff
2016-06-20
Jim Procter
JAL-2110 copy alcodonframes only if copy constructor...
tree
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commitdiff
2016-06-19
Jim Procter
JAL-2110 JAL-2131 JAL-1765 remove reference to jalview...
tree
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commitdiff
2016-06-16
gmungoc
JAL-2112 optimisation of EMBL CDS parsing
tree
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commitdiff
2016-06-14
gmungoc
JAL-1686 JAL-2110 equals and/or hashCode method added
tree
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commitdiff
2016-05-31
gmungoc
JAL-2110 refactor + tests to allow a dbref version...
tree
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commitdiff
2016-05-31
Jim Procter
Merge branch 'develop' into features/JAL-2113_emblXml1.2
tree
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commitdiff
2016-05-30
gmungoc
JAL-1989 equals method strengthened to fully match...
tree
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commitdiff
2016-05-27
gmungoc
JAL-1989 added hashCode and equals, renamed field to...
tree
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commitdiff
2016-05-26
gmungoc
JAL-2113 additions to embl_mapping.xml / data models...
features/JAL-2113_emblXml1.2
tree
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commitdiff
2016-05-23
gmungoc
JAL-2113 remove spaces in sequence from unmarshalling...
tree
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commitdiff
2016-05-23
gmungoc
JAL-2114 save 'raw' ENA location as a sequence feature...
tree
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commitdiff
2016-05-20
gmungoc
JAL-2113 corrected test to use valid location syntax
tree
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commitdiff
2016-05-20
gmungoc
JAL-2113 embl_mapping.xml and code updated for EMBL...
tree
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commitdiff
2016-05-17
tcofoegbu
JAL-1270 Fixed anntatedPDBFileInputTest and updated...
tree
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commitdiff
2016-05-05
Jim Procter
JAL-192 patch for off-by one and pathological case...
tree
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commitdiff
2016-04-29
Jim Procter
JAL-192 need visible and actual sequence limits for...
tree
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commitdiff
2016-04-29
Jim Procter
JAL-192 fix bounds when no hidden regions, and when...
tree
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commitdiff
2016-04-29
Jim Procter
JAL-192 ‘efficiently’ locate visible bounds for a seque...
tree
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commitdiff
2016-04-23
Jim Procter
JAL-2075 findPosition for SeqCigar (with test)
tree
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commitdiff
2016-04-13
Jim Procter
Merge branch 'bug/JAL-2046_ds_sharing_features_broken...
tree
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commitdiff
2016-04-11
tcofoegbu
JAL-2054 Renamed getStartEnd in AlignFrame to getVisibl...
tree
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commitdiff
2016-04-08
Jim Procter
JAL-2050 JAL-1722 new getSelectedRange() method to...
tree
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commitdiff
2016-04-05
Jim Procter
JAL-2046 RFC about cyclic dataset sequence references...
tree
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commitdiff
2016-04-05
Jim Procter
JAL-2046 revise test for ambiguous case
tree
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commitdiff
2016-04-05
Jim Procter
JAL-2046 ambiguous test for addSequenceFeature when...
tree
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commitdiff
2016-04-05
Jim Procter
JAL-2046 RFC on addSequenceFeature behaviour after...
tree
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commitdiff
2016-04-05
Jim Procter
JAL-2046 test behaviour of copy constructor in differen...
tree
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commitdiff
2016-04-04
Jim Procter
JAL-2046 basic test to make sure any derived sequence...
tree
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commitdiff
2016-04-04
Jim Procter
JAL-2001 faster getMax/getMin selected column, with...
tree
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commitdiff
2016-04-01
gmungoc
JAL-2046 fix for broken test for deriveSequence
tree
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commitdiff
2016-04-01
gmungoc
JAL-1705 reworked AlignmentUtils.makeCdsAlignment and...
tree
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commitdiff
2016-04-01
gmungoc
JAL-1705 tweak to MapList.toString for debugging
tree
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commitdiff
2016-04-01
gmungoc
JAL-2037 set DBRefEntry.version to "0" not "" in EMBL...
tree
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commitdiff
2016-03-21
gmungoc
JAL-2029 many-to-many EnsemblCDS-to-Uniprot mappings
tree
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commitdiff
2016-03-01
gmungoc
JAL-1705 align CDS and peptide products to transcripts
tree
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commitdiff
2016-02-12
gmungoc
JAL-1705 JAL-1686 stronger SequenceFeature.equals(...
tree
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commitdiff
2016-02-04
gmungoc
JAL-1705 additional tests, validation regexp tweaks...
tree
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commitdiff
2016-01-28
gmungoc
Merge branch 'develop' into JAL-1705_trialMerge
tree
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commitdiff
2016-01-21
gmungoc
JAL-1705 tests for amended toString
tree
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commitdiff
2016-01-11
gmungoc
JAL-1989 more unit tests and encapsulation for ColumnSe...
tree
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commitdiff
2016-01-05
gmungoc
JAL-653 updating 'align as' tests to match latest tweak...
tree
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commitdiff
2015-12-22
gmungoc
JAL-653 realise virtual mappings and align when adding...
tree
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commitdiff
next