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JAL-2426 Checks on conservation thread in case we are shutting down
[jalview.git]
/
test
/
jalview
/
datamodel
/
2017-02-15
Jim Procter
JAL-2374 tests for SequenceGroup.contains
tree
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commitdiff
2017-02-15
Jim Procter
JAL-2374 JAL-1270 assign SequenceGroup tests to ‘Functi...
tree
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commitdiff
2017-02-09
gmungoc
JAL-2405 check for circular reference in SequenceGroup...
tree
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commitdiff
2017-01-20
gmungoc
Merge branch 'features/JAL-2360colourSchemeApplicabilit...
tree
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commitdiff
2017-01-20
gmungoc
Merge branch 'develop' into features/JAL-2360colourSche...
tree
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commitdiff
2017-01-19
gmungoc
JAL-2370 unit tests for extracted ColumnSelection.stret...
tree
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commitdiff
2017-01-17
gmungoc
JAL-2370 fix bug when hiding a range including two...
tree
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commitdiff
2017-01-06
gmungoc
Merge branch 'features/JAL-2360colourSchemeApplicabilit...
tree
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commitdiff
2017-01-06
gmungoc
Merge branch 'develop' into features/JAL-2360colourSche...
tree
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commitdiff
2017-01-05
gmungoc
JAL-2374 unit test for (modified) Alignment.findGroup()
tree
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commitdiff
2017-01-05
gmungoc
JAL-2371 tests added
tree
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commitdiff
2016-12-21
gmungoc
JAL-2360 Javadoc and test cases for findAnnotation
tree
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commitdiff
2016-11-29
gmungoc
JAL-2329 tests to confirm behaviour of Java extended...
tree
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commitdiff
2016-11-28
gmungoc
Merge branch 'develop' into trialMerge
tree
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commitdiff
2016-11-28
tcofoegbu
Merge branch 'features/JAL-2326_JOptionPane-refactoring...
tree
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commitdiff
2016-11-25
gmungoc
Merge branch 'develop' into trialMerge
tree
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commitdiff
2016-11-24
tcofoegbu
JAL-2326 added setup method for JvOptionPane in all...
features/JAL-2326_JOptionPane-refactoring
tree
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commitdiff
2016-11-24
Jim Procter
JAL-2325 apply license to new source files
tree
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commitdiff
2016-11-23
Jim Procter
Merge branch 'bug/JAL-2323disulfideOverview' into develop
tree
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commitdiff
2016-11-22
Jim Procter
Merge branch 'features/JAL-1738_JAL-345_selectionfromhi...
tree
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commitdiff
2016-11-17
gmungoc
JAL-2327 add isContactFeature
tree
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commitdiff
2016-11-16
gmungoc
JAL-2324 fix and tests for comparison of Float.NaN...
tree
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commitdiff
2016-11-04
gmungoc
JAL-966 JAL-1854 removed redundant methods / modifiers...
tree
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commitdiff
2016-11-02
Jim Procter
JAL-345 JAL-1738 fix test (still passes)
tree
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commitdiff
2016-11-02
Jim Procter
JAL-354 JAL-1738 add returns SearchResultMatchI instanc...
tree
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commitdiff
2016-11-02
gmungoc
JAL-98 test updated for percentage rounded
tree
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commitdiff
2016-11-02
gmungoc
JAL-98 Profile and ResidueCount moved from analysis...
tree
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commitdiff
2016-11-01
Jim Procter
JAL-345 JAL-1738 strengthen test for cardinalty count...
tree
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commitdiff
2016-11-01
Jim Procter
JAL-345 JAL-1738 typo
tree
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commitdiff
2016-11-01
Jim Procter
JAL-345 JAL-1738 new tests (failing) for SearchResultsI...
tree
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commitdiff
2016-10-28
Jim Procter
JAL-966 JAL-1738 JAL-345 interfaces for SearchResults...
tree
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commitdiff
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
tree
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commitdiff
2016-10-24
Jim Procter
Merge branch 'releases/Release_2_10_0_Branch'
tree
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commitdiff
2016-10-06
gmungoc
Merge branch 'develop' into task/JAL-2196pdbeProperties
tree
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commitdiff
2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
tree
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commitdiff
2016-10-05
Jim Procter
JAL-2189 apply license
tree
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commitdiff
2016-10-05
Jim Procter
JAL-2189 format tests
tree
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commitdiff
2016-10-05
gmungoc
Merge branch 'develop' into task/JAL-2196pdbeProperties
tree
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commitdiff
2016-10-05
Jim Procter
Revert "JAL-2245 Castor mapping and code changes for...
tree
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commitdiff
2016-10-04
gmungoc
Merge branch 'bug/JAL-2245enaXmlChange' into develop
tree
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commitdiff
2016-10-04
gmungoc
JAL-2245 Castor mapping and code changes for change...
bug/JAL-2245enaXmlChange
tree
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commitdiff
2016-10-04
gmungoc
JAL-2232 added test that failed before last fix, passes...
tree
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commitdiff
2016-10-03
gmungoc
JAL-2110 additional tests for setDatasetSequence, javad...
tree
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commitdiff
2016-09-28
Jim Procter
JAL-2210 JAL-2235 fix deriveSequence test for tightened...
tree
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commitdiff
2016-09-28
Jim Procter
JAL-2235 implicit test to check that exception is raise...
tree
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commitdiff
2016-09-19
gmungoc
JAL-2172 test and code updates for readonly selection...
tree
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commitdiff
2016-09-16
gmungoc
JAL-2157 JAL-1803 refactored Sequence.updatePDBIds...
tree
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commitdiff
2016-09-13
gmungoc
JAL-1803 tests added for PDBEntry.Type
tree
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commitdiff
2016-09-13
gmungoc
JAL-2196 refactor PDBEntry.getProperty,setProperty...
tree
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commitdiff
2016-09-13
gmungoc
JAL-1803 extracted class ChainId to jalview.util.CaseIn...
tree
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commitdiff
2016-09-06
gmungoc
JAL-2106 DBRefEntry.isPrimary() renamed isPrimaryCandid...
tree
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commitdiff
2016-09-05
gmungoc
JAL-2106 increased coverage for testGetPrimaryDbRefs
tree
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commitdiff
2016-09-05
gmungoc
JAL-2106 corrections to DBRefEntry.isPrimary code and...
tree
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commitdiff
2016-09-04
Jim Procter
JAL-1803 JAL-2106 patch tests for tighter PDB Primary...
tree
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commitdiff
2016-08-30
Jim Procter
JAL-2154 javadoc, fix underloaded version of assertData...
tree
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commitdiff
2016-08-30
Jim Procter
Merge branch 'develop' into merge/develop_bug/JAL-2154p...
tree
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commitdiff
2016-08-30
gmungoc
Merge branch 'develop' into features/filetypeEnum
tree
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commitdiff
2016-08-29
Jim Procter
JAL-2154 Optional message parameter for assertDatasetNo...
tree
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commitdiff
2016-08-29
Jim Procter
JAL-2154 new assertDatasetIsNormalised to trivially...
tree
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commitdiff
2016-08-29
Jim Procter
JAL-2154 additional test that removing a duplicate...
tree
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commitdiff
2016-08-26
gmungoc
Merge branch 'develop' into bug/JAL-1841rnaSecStr
tree
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commitdiff
2016-08-25
Jim Procter
JAL-2106 tighten DBRefEntry primary seq test for PDB
tree
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commitdiff
2016-08-25
Jim Procter
Merge branch 'refactor/JAL-2106_sourceDbRef_revision...
tree
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commitdiff
2016-08-25
Jim Procter
Merge branch 'develop' into refactor/JAL-2106_sourceDbR...
tree
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commitdiff
2016-08-24
Jim Procter
JAL-2106 TODO - verify Embl primary refs get added
tree
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commitdiff
2016-08-24
Jim Procter
JAL-2106 removed setSourceDBRef, refactor getSourceDBRe...
tree
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commitdiff
2016-08-24
Jim Procter
JAL-2106 stricter check for 1:1 mapping (same numbering...
tree
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commitdiff
2016-08-24
Jim Procter
JAL-2106 rejig test to minimally verify patch that...
tree
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commitdiff
2016-08-24
Jim Procter
JAL-2106 DBRefEntry.isPrimary() minimal test & implemen...
tree
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commitdiff
2016-08-23
Jim Procter
Merge branch 'develop' into bug/JAL-2154projectMappings
tree
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commitdiff
2016-08-23
gmungoc
JAL-2174 markColumns() refactored inside ColumnSelection
tree
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commitdiff
2016-08-22
Jim Procter
JAL-2154 always check dataset sequence for sequence...
tree
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commitdiff
2016-08-22
Jim Procter
JAL-2154 patch verifyAlignment so it fails for duplicat...
tree
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commitdiff
2016-08-22
Jim Procter
JAL-2154 tidy assert messages and fix test to verify...
tree
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commitdiff
2016-08-22
Jim Procter
JAL-2154 test that verifyAlignment fails for duplicate...
tree
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commitdiff
2016-08-19
Jim Procter
JAL-2154 testNG like assertAlignmentDatasetRefs static...
tree
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commitdiff
2016-08-18
gmungoc
Merge branch 'develop' into bug/JAL-1841rnaSecStr
tree
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commitdiff
2016-08-18
gmungoc
JAL-2001 return copy of selection in getSelected()
tree
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commitdiff
2016-08-16
Jim Procter
JAL-2154 verify sequenceI/dataset refs for codonmappings
tree
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commitdiff
2016-08-16
Jim Procter
JAL-2154 check alignment isn’t null before validating
tree
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commitdiff
2016-08-16
gmungoc
Merge branch 'develop' into bug/JAL-1841rnaSecStr
tree
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commitdiff
2016-08-16
gmungoc
JAL-2172 unit test added
tree
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commitdiff
2016-08-16
gmungoc
JAL-2171 matching bracket default character for rna...
tree
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commitdiff
2016-08-16
Jim Procter
JAL-2154 new assert to check reference integrity for...
tree
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commitdiff
2016-08-04
Jim Procter
JAL-2154 make sure all sequences referenced via DBRefEn...
tree
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commitdiff
2016-07-18
Jim Procter
JAL-2110 JAL-2145 fix out of date test for 2baee069f9ed...
tree
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commitdiff
2016-07-11
gmungoc
file format enum wip changes
tree
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commitdiff
2016-07-06
gmungoc
JAL-2110 AlignmentUtils.alignCdsAsProtein implemented
tree
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commitdiff
2016-07-06
gmungoc
JAL-2110 add 'mapFromId' to Mapping (for e.g. EMBL...
tree
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commitdiff
2016-07-06
gmungoc
JAL-2110 fixes and tests for adding dbrefs to EMBL...
tree
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commitdiff
2016-07-04
gmungoc
JAL-2110 added another test case (should fail but doesn't)
tree
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commitdiff
2016-07-04
gmungoc
Revert "JAL-2110 use shared alignment dataset when...
tree
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commitdiff
2016-07-04
gmungoc
JAL-2110 use shared alignment dataset when copying...
tree
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commitdiff
2016-06-30
gmungoc
JAL-2110 fixes and tests for synthesized EMBLCDSPROTEIN...
tree
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commitdiff
2016-06-29
gmungoc
Merge branch 'develop' into features/JAL-2110_crossRefD...
tree
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commitdiff
2016-06-27
gmungoc
JAL-1270 unit tests for HiddenSequences
tree
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commitdiff
2016-06-23
Jim Procter
JAL-2110 SequenceI.isProtein method
tree
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commitdiff
2016-06-21
Jim Procter
Merge branch 'features/JAL-2110_crossRefDuplications...
tree
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commitdiff
2016-06-21
Jim Procter
JAL-1270 ensure before/after clauses have at least...
tree
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commitdiff
2016-06-21
gmungoc
JAL-2113 tidy up canonicalisation of Uniprot xrefs...
tree
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commitdiff
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