JAL-3141 forgot to add this file after extracting the class!
[jalview.git] / test / jalview / ext /
2018-09-03 gmungocJAL-3076 fetch Ensembl sequence as JSON instead of...
2018-08-10 gmungocJAL-3076 refactor for more efficient scan of 'gene...
2018-08-10 gmungocJAL-3076 fetch Ensembl sequence as JSON instead of...
2018-05-07 gmungocMerge branch 'releases/Release_2_10_4_Branch' into...
2018-04-05 Jim ProcterJAL-2945 failing test for structure mapping
2018-04-05 Jim ProcterJAL-2945 formatting
2018-03-07 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' into...
2018-02-23 Jim ProcterMerge branch 'features/JAL-2885UniprotHttps' into relea...
2018-02-20 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' into...
2018-02-12 Jim ProcterJAL-2904 JAL-2780 JAL-2781 update JmolCommandsTest...
2018-01-30 gmungocJAL-1793 update spike build to latest incl stop and...
2018-01-26 gmungocMerge branch 'develop' into features/JAL-1793VCF
2018-01-17 gmungocJAL-2679 case-insensitive comparison of query and retri...
2018-01-16 gmungocJAL-2885 uniprot now https, uniprot/ensembl/pfam/xfam...
2017-12-04 gmungocJAL-2850 JAL-1766 option to load contig sequence refere...
2017-12-01 gmungocJAL-2835 spike updated to latest (use specific SO term...
2017-12-01 gmungocJAL-2835 additional sub-terms of sequence_variant added
2017-11-30 gmungocJAL-1766 additional tests for stub htsjdk wrapper
2017-10-24 gmungocJAL-2738 update spike branch with latest
2017-10-24 gmungocMerge branch 'develop' into features/JAL-1793VCF; lambd...
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2253' into develop
2017-10-20 gmungocJAL-2253 pull up constant, additional unit test bug/JAL-2253
2017-10-17 Jim ProcterJAL-2777 test for the whitespace chain
2017-10-09 gmungocJAL-2523 basic sleep and retry (3 times) on 429 respons... features/JAL-2523httpRetries
2017-10-09 gmungocJAL-2523 convenience method to get model organisms
2017-10-03 gmungocJAL-2738 copy to spikes/mungo
2017-09-25 gmungocJAL-2738 query unindexed file, unit test for VCFLoader
2017-09-21 gmungocJAL-2738 PoC of Load VCF file on to gene sequence
2017-09-19 gmungocJAL-1793 wrapper for plain or indexed VCF + simple...
2017-09-19 gmungocJAL-1793 simple tests of reading raw and indexed VCF...
2017-08-31 gmungocJAL-2253 safer simpler resolution of identifiers using...
2017-06-14 gmungocJAL-2598 Sequence.getSequence return a copy of the...
2017-06-09 gmungocJAL-2446 merged to spike branch
2017-06-02 gmungocMerge branch 'features/JAL-2446NCList' into features...
2017-06-01 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-06-01 gmungocJAL-2754 Sequence.findFeatures(fromCol, toCol) features/JAL-2754findFeaturesByColumn
2017-05-31 tcofoegbuFixed failing tests
2017-05-31 tcofoegbuJAL-2533 updated unit test to reflect improvement
2017-05-30 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-05-29 Jim ProcterJAL-2465 fixed groups for JmolViewerTest.testStructureL...
2017-05-25 gmungocJAL-2557 removal of Sequence.sequenceFeatures
2017-05-24 gmungocJAL-2505 remove setters for SequenceFeature.begin,end...
2017-05-24 gmungocJAL-2529 add object_type=cdna to EnsemblCdna parameters
2017-05-12 gmungocJAL-2525 get sequence features for Ontology term(s...
2017-05-01 tcofoegbuJAL-2465 bugfix and rerefactor renamed getPdbFile(...
2017-05-01 tcofoegbuJAL-2465 unit test for bugfix
2017-03-31 gmungocJAL-2430 code tidy, unit test for Jmol hidden column...
2017-03-13 gmungocJAL-2438 FeatureColourFinder refactored from FeatureRen...
2017-03-08 gmungocJAL-2430 colour columns hidden in alignment gray on...
2017-03-01 gmungocMerge branch 'features/JAL-2295setChimeraAttributes...
2017-02-09 gmungocMerge branch 'develop' into features/JAL-2379pcaMemory features/JAL-2379pcaMemory
2017-01-23 gmungocJAL-2379 made SparseMatrix.divide() so as to exactly...
2017-01-17 gmungocJAL-2379 SparseDoubleArray added (for use by SparseMatrix)
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum,
2016-11-29 gmungocMerge branch 'develop' into features/JAL-2295setChimera...
2016-11-28 gmungocMerge branch 'develop' into trialMerge
2016-11-28 tcofoegbuMerge branch 'features/JAL-2326_JOptionPane-refactoring...
2016-11-25 gmungocMerge branch 'develop' into trialMerge
2016-11-24 tcofoegbuJAL-2326 added setup method for JvOptionPane in all... features/JAL-2326_JOptionPane-refactoring
2016-11-24 Jim ProcterJAL-2325 apply license to new source files
2016-11-16 gmungocJAL-2296 unit test for reading Chimera attributes to...
2016-11-16 gmungocJAL-2295 don't exclude RESNUM from transfer to Chimera
2016-11-14 gmungocJAL-2295 JAL-2296 skeleton 'attributes to features...
2016-11-11 gmungocJAL-2295 tests now 'network-free' with local PDB and...
2016-11-11 gmungocJAL-1270 corrected command-line args
2016-11-11 gmungocJAL-2295 test that verifies transfer of features to...
2016-11-11 gmungocJAL-2295 sorted properties for readability
2016-11-10 gmungocJAL-2295 additional tests, stronger sanitisation of...
2016-11-08 gmungocJAL-2295 feature and colour commands refactored to...
2016-11-08 gmungocJAL-2295 extracted AtomSpecModel for reuse in Chimera...
2016-11-07 gmungocJAL-1805 groups=Functional added where missing
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-24 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch'
2016-10-24 gmungocMerge branch 'develop' into bug/JAL-98consensusMemory
2016-10-19 Jim ProcterJAL-2269 JAL-2195 review and revised test
2016-10-10 tcofoegbuJAL-2262 JAL-2195 unit test for bug bug/JAL-2262_dnd-for-local-structure-files
2016-10-06 gmungocMerge branch 'develop' into bug/JAL-98consensusMemory
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-10-05 Jim ProcterJAL-2189 apply license
2016-10-05 Jim ProcterJAL-2189 format tests
2016-10-03 gmungocJAL-98 throw exception (unhandled) for int overthrow...
2016-10-03 gmungocJAL-98 use Profile to store consensus, ResidueCount...
2016-09-19 tcofoegbumerge
2016-09-16 gmungocJAL-2157 JAL-1803 refactored Sequence.updatePDBIds...
2016-09-16 gmungocJAL-2164 removed unused parameters from JmolParser...
2016-09-16 gmungocJAL-1270 JAL-1919 ensure Temp Factor is OFF for test...
2016-09-13 tcofoegbuRevert "JAL-2164 JAL-1919 disabled and removed PDB...
2016-09-13 tcofoegbuJAL-2164 JAL-1919 disabled and removed PDB file parser...
2016-09-06 gmungocJAL-2106 DBRefEntry.isPrimary() renamed isPrimaryCandid...
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum
2016-08-25 Jim ProcterJAL-2106 JAL-2154 cross-refs from Ensembl should verify...
2016-07-27 tcofoegbuJAL-1919 added codes for End-2-End scan for sequence...
2016-07-21 tcofoegbuResolve merge conflict for StructureImportSettings
2016-07-21 tcofoegbuJAL-2148 fix to heuristically determine chain terminati...
2016-07-21 Jim ProcterMerge branch 'apifix/JAL-1926_JAL-2106' into develop
2016-07-19 tcofoegbuJAL-1919 set default structure file format to mmCIF...
2016-07-18 gmungocfileFormat enum wip changes
2016-07-11 gmungocfile format enum wip changes
2016-07-08 tcofoegbuJAL-1919 Fixed failing tests, enabled HETATM processing...
2016-06-21 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie...
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