| 2018-09-03 |
gmungoc | JAL-3076 fetch Ensembl sequence as JSON instead of... |
tree | commitdiff |
| 2018-08-10 |
gmungoc | JAL-3076 refactor for more efficient scan of 'gene... |
tree | commitdiff |
| 2018-08-10 |
gmungoc | JAL-3076 fetch Ensembl sequence as JSON instead of... |
tree | commitdiff |
| 2018-05-07 |
gmungoc | Merge branch 'releases/Release_2_10_4_Branch' into... |
tree | commitdiff |
| 2018-04-05 |
Jim Procter | JAL-2945 failing test for structure mapping |
tree | commitdiff |
| 2018-04-05 |
Jim Procter | JAL-2945 formatting |
tree | commitdiff |
| 2018-03-07 |
Jim Procter | Merge branch 'releases/Release_2_10_4_Branch' into... |
tree | commitdiff |
| 2018-02-23 |
Jim Procter | Merge branch 'features/JAL-2885UniprotHttps' into relea... |
tree | commitdiff |
| 2018-02-20 |
Jim Procter | Merge branch 'releases/Release_2_10_4_Branch' into... |
tree | commitdiff |
| 2018-02-12 |
Jim Procter | JAL-2904 JAL-2780 JAL-2781 update JmolCommandsTest... |
tree | commitdiff |
| 2018-01-30 |
gmungoc | JAL-1793 update spike build to latest incl stop and... |
tree | commitdiff |
| 2018-01-26 |
gmungoc | Merge branch 'develop' into features/JAL-1793VCF |
tree | commitdiff |
| 2018-01-17 |
gmungoc | JAL-2679 case-insensitive comparison of query and retri... |
tree | commitdiff |
| 2018-01-16 |
gmungoc | JAL-2885 uniprot now https, uniprot/ensembl/pfam/xfam... |
tree | commitdiff |
| 2017-12-04 |
gmungoc | JAL-2850 JAL-1766 option to load contig sequence refere... |
tree | commitdiff |
| 2017-12-01 |
gmungoc | JAL-2835 spike updated to latest (use specific SO term... |
tree | commitdiff |
| 2017-12-01 |
gmungoc | JAL-2835 additional sub-terms of sequence_variant added |
tree | commitdiff |
| 2017-11-30 |
gmungoc | JAL-1766 additional tests for stub htsjdk wrapper |
tree | commitdiff |
| 2017-10-24 |
gmungoc | JAL-2738 update spike branch with latest |
tree | commitdiff |
| 2017-10-24 |
gmungoc | Merge branch 'develop' into features/JAL-1793VCF; lambd... |
tree | commitdiff |
| 2017-10-23 |
Jim Procter | Merge branch 'bug/JAL-2253' into develop |
tree | commitdiff |
| 2017-10-20 |
gmungoc | JAL-2253 pull up constant, additional unit test bug/JAL-2253 |
tree | commitdiff |
| 2017-10-17 |
Jim Procter | JAL-2777 test for the whitespace chain |
tree | commitdiff |
| 2017-10-09 |
gmungoc | JAL-2523 basic sleep and retry (3 times) on 429 respons... features/JAL-2523httpRetries |
tree | commitdiff |
| 2017-10-09 |
gmungoc | JAL-2523 convenience method to get model organisms |
tree | commitdiff |
| 2017-10-03 |
gmungoc | JAL-2738 copy to spikes/mungo |
tree | commitdiff |
| 2017-09-25 |
gmungoc | JAL-2738 query unindexed file, unit test for VCFLoader |
tree | commitdiff |
| 2017-09-21 |
gmungoc | JAL-2738 PoC of Load VCF file on to gene sequence |
tree | commitdiff |
| 2017-09-19 |
gmungoc | JAL-1793 wrapper for plain or indexed VCF + simple... |
tree | commitdiff |
| 2017-09-19 |
gmungoc | JAL-1793 simple tests of reading raw and indexed VCF... |
tree | commitdiff |
| 2017-08-31 |
gmungoc | JAL-2253 safer simpler resolution of identifiers using... |
tree | commitdiff |
| 2017-06-14 |
gmungoc | JAL-2598 Sequence.getSequence return a copy of the... |
tree | commitdiff |
| 2017-06-09 |
gmungoc | JAL-2446 merged to spike branch |
tree | commitdiff |
| 2017-06-02 |
gmungoc | Merge branch 'features/JAL-2446NCList' into features... |
tree | commitdiff |
| 2017-06-01 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
| 2017-06-01 |
gmungoc | JAL-2754 Sequence.findFeatures(fromCol, toCol) features/JAL-2754findFeaturesByColumn |
tree | commitdiff |
| 2017-05-31 |
tcofoegbu | Fixed failing tests |
tree | commitdiff |
| 2017-05-31 |
tcofoegbu | JAL-2533 updated unit test to reflect improvement |
tree | commitdiff |
| 2017-05-30 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
| 2017-05-29 |
Jim Procter | JAL-2465 fixed groups for JmolViewerTest.testStructureL... |
tree | commitdiff |
| 2017-05-25 |
gmungoc | JAL-2557 removal of Sequence.sequenceFeatures |
tree | commitdiff |
| 2017-05-24 |
gmungoc | JAL-2505 remove setters for SequenceFeature.begin,end... |
tree | commitdiff |
| 2017-05-24 |
gmungoc | JAL-2529 add object_type=cdna to EnsemblCdna parameters |
tree | commitdiff |
| 2017-05-12 |
gmungoc | JAL-2525 get sequence features for Ontology term(s... |
tree | commitdiff |
| 2017-05-01 |
tcofoegbu | JAL-2465 bugfix and rerefactor renamed getPdbFile(... |
tree | commitdiff |
| 2017-05-01 |
tcofoegbu | JAL-2465 unit test for bugfix |
tree | commitdiff |
| 2017-03-31 |
gmungoc | JAL-2430 code tidy, unit test for Jmol hidden column... |
tree | commitdiff |
| 2017-03-13 |
gmungoc | JAL-2438 FeatureColourFinder refactored from FeatureRen... |
tree | commitdiff |
| 2017-03-08 |
gmungoc | JAL-2430 colour columns hidden in alignment gray on... |
tree | commitdiff |
| 2017-03-01 |
gmungoc | Merge branch 'features/JAL-2295setChimeraAttributes... |
tree | commitdiff |
| 2017-02-09 |
gmungoc | Merge branch 'develop' into features/JAL-2379pcaMemory features/JAL-2379pcaMemory |
tree | commitdiff |
| 2017-01-23 |
gmungoc | JAL-2379 made SparseMatrix.divide() so as to exactly... |
tree | commitdiff |
| 2017-01-17 |
gmungoc | JAL-2379 SparseDoubleArray added (for use by SparseMatrix) |
tree | commitdiff |
| 2016-12-16 |
gmungoc | JAL-2360 refactoring for JalviewColourScheme enum, |
tree | commitdiff |
| 2016-11-29 |
gmungoc | Merge branch 'develop' into features/JAL-2295setChimera... |
tree | commitdiff |
| 2016-11-28 |
gmungoc | Merge branch 'develop' into trialMerge |
tree | commitdiff |
| 2016-11-28 |
tcofoegbu | Merge branch 'features/JAL-2326_JOptionPane-refactoring... |
tree | commitdiff |
| 2016-11-25 |
gmungoc | Merge branch 'develop' into trialMerge |
tree | commitdiff |
| 2016-11-24 |
tcofoegbu | JAL-2326 added setup method for JvOptionPane in all... features/JAL-2326_JOptionPane-refactoring |
tree | commitdiff |
| 2016-11-24 |
Jim Procter | JAL-2325 apply license to new source files |
tree | commitdiff |
| 2016-11-16 |
gmungoc | JAL-2296 unit test for reading Chimera attributes to... |
tree | commitdiff |
| 2016-11-16 |
gmungoc | JAL-2295 don't exclude RESNUM from transfer to Chimera |
tree | commitdiff |
| 2016-11-14 |
gmungoc | JAL-2295 JAL-2296 skeleton 'attributes to features... |
tree | commitdiff |
| 2016-11-11 |
gmungoc | JAL-2295 tests now 'network-free' with local PDB and... |
tree | commitdiff |
| 2016-11-11 |
gmungoc | JAL-1270 corrected command-line args |
tree | commitdiff |
| 2016-11-11 |
gmungoc | JAL-2295 test that verifies transfer of features to... |
tree | commitdiff |
| 2016-11-11 |
gmungoc | JAL-2295 sorted properties for readability |
tree | commitdiff |
| 2016-11-10 |
gmungoc | JAL-2295 additional tests, stronger sanitisation of... |
tree | commitdiff |
| 2016-11-08 |
gmungoc | JAL-2295 feature and colour commands refactored to... |
tree | commitdiff |
| 2016-11-08 |
gmungoc | JAL-2295 extracted AtomSpecModel for reuse in Chimera... |
tree | commitdiff |
| 2016-11-07 |
gmungoc | JAL-1805 groups=Functional added where missing |
tree | commitdiff |
| 2016-10-25 |
Jim Procter | JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch |
tree | commitdiff |
| 2016-10-24 |
Jim Procter | Merge branch 'releases/Release_2_10_0_Branch' |
tree | commitdiff |
| 2016-10-24 |
gmungoc | Merge branch 'develop' into bug/JAL-98consensusMemory |
tree | commitdiff |
| 2016-10-19 |
Jim Procter | JAL-2269 JAL-2195 review and revised test |
tree | commitdiff |
| 2016-10-10 |
tcofoegbu | JAL-2262 JAL-2195 unit test for bug bug/JAL-2262_dnd-for-local-structure-files |
tree | commitdiff |
| 2016-10-06 |
gmungoc | Merge branch 'develop' into bug/JAL-98consensusMemory |
tree | commitdiff |
| 2016-10-06 |
Jim Procter | JAL-2089 Merge branch releases/Release_2_10_Branch... |
tree | commitdiff |
| 2016-10-05 |
Jim Procter | JAL-2189 apply license |
tree | commitdiff |
| 2016-10-05 |
Jim Procter | JAL-2189 format tests |
tree | commitdiff |
| 2016-10-03 |
gmungoc | JAL-98 throw exception (unhandled) for int overthrow... |
tree | commitdiff |
| 2016-10-03 |
gmungoc | JAL-98 use Profile to store consensus, ResidueCount... |
tree | commitdiff |
| 2016-09-19 |
tcofoegbu | merge |
tree | commitdiff |
| 2016-09-16 |
gmungoc | JAL-2157 JAL-1803 refactored Sequence.updatePDBIds... |
tree | commitdiff |
| 2016-09-16 |
gmungoc | JAL-2164 removed unused parameters from JmolParser... |
tree | commitdiff |
| 2016-09-16 |
gmungoc | JAL-1270 JAL-1919 ensure Temp Factor is OFF for test... |
tree | commitdiff |
| 2016-09-13 |
tcofoegbu | Revert "JAL-2164 JAL-1919 disabled and removed PDB... |
tree | commitdiff |
| 2016-09-13 |
tcofoegbu | JAL-2164 JAL-1919 disabled and removed PDB file parser... |
tree | commitdiff |
| 2016-09-06 |
gmungoc | JAL-2106 DBRefEntry.isPrimary() renamed isPrimaryCandid... |
tree | commitdiff |
| 2016-08-30 |
gmungoc | Merge branch 'develop' into features/filetypeEnum |
tree | commitdiff |
| 2016-08-25 |
Jim Procter | JAL-2106 JAL-2154 cross-refs from Ensembl should verify... |
tree | commitdiff |
| 2016-07-27 |
tcofoegbu | JAL-1919 added codes for End-2-End scan for sequence... |
tree | commitdiff |
| 2016-07-21 |
tcofoegbu | Resolve merge conflict for StructureImportSettings |
tree | commitdiff |
| 2016-07-21 |
tcofoegbu | JAL-2148 fix to heuristically determine chain terminati... |
tree | commitdiff |
| 2016-07-21 |
Jim Procter | Merge branch 'apifix/JAL-1926_JAL-2106' into develop |
tree | commitdiff |
| 2016-07-19 |
tcofoegbu | JAL-1919 set default structure file format to mmCIF... |
tree | commitdiff |
| 2016-07-18 |
gmungoc | fileFormat enum wip changes |
tree | commitdiff |
| 2016-07-11 |
gmungoc | file format enum wip changes |
tree | commitdiff |
| 2016-07-08 |
tcofoegbu | JAL-1919 Fixed failing tests, enabled HETATM processing... |
tree | commitdiff |
| 2016-06-21 |
Jim Procter | Merge branch 'develop' of source.jalview.org/git/jalvie... |
tree | commitdiff |
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