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JAL-2877 updated forester.jar
[jalview.git] / test / jalview / ext /
2017-11-24 kjvdheideJAL-2799 rearranged AptxInit code tree | commitdiff
2017-11-17 kjvdheideMerge branch 'kjvdh/features/PhylogenyViewer' of tree | commitdiff
2017-11-08 kjvdheideJAL-2794 Aptx instances get their parent alignment... tree | commitdiff
2017-10-26 kjvdheidetest name change tree | commitdiff
2017-10-25 kjvdheidefinished up tests for trees made from jalview data tree | commitdiff
2017-10-25 kjvdheideImplemented distance tests tree | commitdiff
2017-10-25 kjvdheideImplemented tree title test for tree made from Jalview tree | commitdiff
2017-10-25 kjvdheideAdded tree title test tree | commitdiff
2017-10-25 kjvdheideRemoved redundant annotations tree | commitdiff
2017-10-25 kjvdheideAdded branch name tests tree | commitdiff
2017-10-25 kjvdheideAdded abstract class for tree viewer testing, rearrange... tree | commitdiff
2017-10-24 kjvdheideTests for Aptx tree created from a Phylogeny object... tree | commitdiff
2017-10-24 kjvdheideMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2253' into develop tree | commitdiff
2017-10-20 gmungocJAL-2253 pull up constant, additional unit test bug/JAL-2253 tree | commitdiff
2017-10-17 Jim ProcterJAL-2777 test for the whitespace chain tree | commitdiff
2017-10-13 kjvdheidebasic tests for Aptx tree | commitdiff
2017-10-13 kjvdheideArchaeopteryxInit is now static tree | commitdiff
2017-10-13 kjvdheideSlight Aptx colour change tree | commitdiff
2017-10-12 kjvdheideCreated test class for Archaeopteryx tree viewing tree | commitdiff
2017-10-09 gmungocJAL-2523 basic sleep and retry (3 times) on 429 respons... features/JAL-2523httpRetries tree | commitdiff
2017-10-09 gmungocJAL-2523 convenience method to get model organisms tree | commitdiff
2017-08-31 gmungocJAL-2253 safer simpler resolution of identifiers using... tree | commitdiff
2017-06-14 gmungocJAL-2598 Sequence.getSequence return a copy of the... tree | commitdiff
2017-06-02 gmungocMerge branch 'features/JAL-2446NCList' into features... tree | commitdiff
2017-06-01 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-06-01 gmungocJAL-2754 Sequence.findFeatures(fromCol, toCol) features/JAL-2754findFeaturesByColumn tree | commitdiff
2017-05-31 tcofoegbuFixed failing tests tree | commitdiff
2017-05-31 tcofoegbuJAL-2533 updated unit test to reflect improvement tree | commitdiff
2017-05-30 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-29 Jim ProcterJAL-2465 fixed groups for JmolViewerTest.testStructureL... tree | commitdiff
2017-05-25 gmungocJAL-2557 removal of Sequence.sequenceFeatures tree | commitdiff
2017-05-24 gmungocJAL-2505 remove setters for SequenceFeature.begin,end... tree | commitdiff
2017-05-24 gmungocJAL-2529 add object_type=cdna to EnsemblCdna parameters tree | commitdiff
2017-05-12 gmungocJAL-2525 get sequence features for Ontology term(s... tree | commitdiff
2017-05-01 tcofoegbuJAL-2465 bugfix and rerefactor renamed getPdbFile(... tree | commitdiff
2017-05-01 tcofoegbuJAL-2465 unit test for bugfix tree | commitdiff
2017-03-31 gmungocJAL-2430 code tidy, unit test for Jmol hidden column... tree | commitdiff
2017-03-13 gmungocJAL-2438 FeatureColourFinder refactored from FeatureRen... tree | commitdiff
2017-03-08 gmungocJAL-2430 colour columns hidden in alignment gray on... tree | commitdiff
2017-03-01 gmungocMerge branch 'features/JAL-2295setChimeraAttributes... tree | commitdiff
2017-02-09 gmungocMerge branch 'develop' into features/JAL-2379pcaMemory features/JAL-2379pcaMemory tree | commitdiff
2017-01-23 gmungocJAL-2379 made SparseMatrix.divide() so as to exactly... tree | commitdiff
2017-01-17 gmungocJAL-2379 SparseDoubleArray added (for use by SparseMatrix) tree | commitdiff
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum, tree | commitdiff
2016-11-29 gmungocMerge branch 'develop' into features/JAL-2295setChimera... tree | commitdiff
2016-11-28 gmungocMerge branch 'develop' into trialMerge tree | commitdiff
2016-11-28 tcofoegbuMerge branch 'features/JAL-2326_JOptionPane-refactoring... tree | commitdiff
2016-11-25 gmungocMerge branch 'develop' into trialMerge tree | commitdiff
2016-11-24 tcofoegbuJAL-2326 added setup method for JvOptionPane in all... features/JAL-2326_JOptionPane-refactoring tree | commitdiff
2016-11-24 Jim ProcterJAL-2325 apply license to new source files tree | commitdiff
2016-11-16 gmungocJAL-2296 unit test for reading Chimera attributes to... tree | commitdiff
2016-11-16 gmungocJAL-2295 don't exclude RESNUM from transfer to Chimera tree | commitdiff
2016-11-14 gmungocJAL-2295 JAL-2296 skeleton 'attributes to features... tree | commitdiff
2016-11-11 gmungocJAL-2295 tests now 'network-free' with local PDB and... tree | commitdiff
2016-11-11 gmungocJAL-1270 corrected command-line args tree | commitdiff
2016-11-11 gmungocJAL-2295 test that verifies transfer of features to... tree | commitdiff
2016-11-11 gmungocJAL-2295 sorted properties for readability tree | commitdiff
2016-11-10 gmungocJAL-2295 additional tests, stronger sanitisation of... tree | commitdiff
2016-11-08 gmungocJAL-2295 feature and colour commands refactored to... tree | commitdiff
2016-11-08 gmungocJAL-2295 extracted AtomSpecModel for reuse in Chimera... tree | commitdiff
2016-11-07 gmungocJAL-1805 groups=Functional added where missing tree | commitdiff
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch tree | commitdiff
2016-10-24 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch' tree | commitdiff
2016-10-24 gmungocMerge branch 'develop' into bug/JAL-98consensusMemory tree | commitdiff
2016-10-19 Jim ProcterJAL-2269 JAL-2195 review and revised test tree | commitdiff
2016-10-10 tcofoegbuJAL-2262 JAL-2195 unit test for bug bug/JAL-2262_dnd-for-local-structure-files tree | commitdiff
2016-10-06 gmungocMerge branch 'develop' into bug/JAL-98consensusMemory tree | commitdiff
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... tree | commitdiff
2016-10-05 Jim ProcterJAL-2189 apply license tree | commitdiff
2016-10-05 Jim ProcterJAL-2189 format tests tree | commitdiff
2016-10-03 gmungocJAL-98 throw exception (unhandled) for int overthrow... tree | commitdiff
2016-10-03 gmungocJAL-98 use Profile to store consensus, ResidueCount... tree | commitdiff
2016-09-19 tcofoegbumerge tree | commitdiff
2016-09-16 gmungocJAL-2157 JAL-1803 refactored Sequence.updatePDBIds... tree | commitdiff
2016-09-16 gmungocJAL-2164 removed unused parameters from JmolParser... tree | commitdiff
2016-09-16 gmungocJAL-1270 JAL-1919 ensure Temp Factor is OFF for test... tree | commitdiff
2016-09-13 tcofoegbuRevert "JAL-2164 JAL-1919 disabled and removed PDB... tree | commitdiff
2016-09-13 tcofoegbuJAL-2164 JAL-1919 disabled and removed PDB file parser... tree | commitdiff
2016-09-06 gmungocJAL-2106 DBRefEntry.isPrimary() renamed isPrimaryCandid... tree | commitdiff
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum tree | commitdiff
2016-08-25 Jim ProcterJAL-2106 JAL-2154 cross-refs from Ensembl should verify... tree | commitdiff
2016-07-27 tcofoegbuJAL-1919 added codes for End-2-End scan for sequence... tree | commitdiff
2016-07-21 tcofoegbuResolve merge conflict for StructureImportSettings tree | commitdiff
2016-07-21 tcofoegbuJAL-2148 fix to heuristically determine chain terminati... tree | commitdiff
2016-07-21 Jim ProcterMerge branch 'apifix/JAL-1926_JAL-2106' into develop tree | commitdiff
2016-07-19 tcofoegbuJAL-1919 set default structure file format to mmCIF... tree | commitdiff
2016-07-18 gmungocfileFormat enum wip changes tree | commitdiff
2016-07-11 gmungocfile format enum wip changes tree | commitdiff
2016-07-08 tcofoegbuJAL-1919 Fixed failing tests, enabled HETATM processing... tree | commitdiff
2016-06-21 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... tree | commitdiff
2016-06-21 Jim ProcterJAL-1270 ensure before/after clauses have at least... tree | commitdiff
2016-06-21 gmungocJAL-1270 added runAlways=true to setUp method tree | commitdiff
2016-06-10 Jim ProcterJAL-1941 remove improper test tag from Annotate3D test... tree | commitdiff
2016-06-10 Jim ProcterJAL-1941 Annotate3d tests should be in network group tree | commitdiff
2016-05-13 gmungocJAL-2105 capture Ensembl data version, check REST versi... tree | commitdiff
2016-05-02 Jim ProcterJAL-1270 capitalise test groups tree | commitdiff
2016-04-14 gmungocJAL-1705 refactored/utility methods to detect e.g.... tree | commitdiff
2016-04-13 tcofoegbuJAL-1270 more fix for failing Functional test tree | commitdiff
2016-04-01 gmungocJAL-1705 fetch all Ensembl xrefs (except GO terms) tree | commitdiff
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