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Merge branch 'develop' into spike/JAL-1950_hmmer3client
[jalview.git]
/
test
/
jalview
/
ext
/
2016-05-02
Jim Procter
JAL-1270 capitalise test groups
tree
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commitdiff
2016-04-14
gmungoc
JAL-1705 refactored/utility methods to detect e.g....
tree
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commitdiff
2016-04-13
tcofoegbu
JAL-1270 more fix for failing Functional test
tree
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commitdiff
2016-04-01
gmungoc
JAL-1705 fetch all Ensembl xrefs (except GO terms)
tree
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commitdiff
2016-03-23
gmungoc
JAL-1705 add DBRefEntry for 'self' to retrieved transcr...
tree
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commitdiff
2016-03-22
gmungoc
JAL-1191 isolated SequenceOntology (BioJava wrapper...
tree
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commitdiff
2016-03-21
tcofoegbu
develop merge
tree
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commitdiff
2016-03-15
gmungoc
JAL-2016 corrected Javadoc, added test for anonymous...
tree
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commitdiff
2016-03-15
gmungoc
JAL-1705 compute reverse complement of variants on...
tree
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commitdiff
2016-03-11
gmungoc
JAL-1705 refactoring etc for fetching Ensembl --> Uniprot
tree
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commitdiff
2016-03-11
tcofoegbu
JAL-1818 reimplemented sequence and annotation processi...
tree
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commitdiff
2016-03-03
gmungoc
JAL-1705 include stop codons in derived CDS; support...
tree
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commitdiff
2016-02-25
tcofoegbu
JAL-1919 initial support for mmCIF using JMol API....
tree
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commitdiff
2016-02-19
gmungoc
JAL-1705 regular expression updates, tests, other refac...
tree
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commitdiff
2016-02-19
gmungoc
JAL-1705 return Ensembl genes for model species for...
tree
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commitdiff
2016-02-12
gmungoc
JAL-1705 various refactoring towards Uniprot-to-Ensembl...
tree
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commitdiff
2016-02-04
gmungoc
JAL-1705 additional tests, validation regexp tweaks...
tree
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commitdiff
2016-02-01
gmungoc
JAL-1705 further unit tests
tree
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commitdiff
2016-02-01
gmungoc
JAL-1705 tests added
tree
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commitdiff
2016-02-01
gmungoc
JAL-1705 JAL-1191 SequenceOntologyLite added as hard...
tree
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commitdiff
2016-01-28
gmungoc
JAL-1705 tests added, minor bugfix and refactoring
tree
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commitdiff
2016-01-28
gmungoc
Merge branch 'develop' into JAL-1705_trialMerge
tree
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commitdiff
2016-01-27
gmungoc
JAL-1705 use GET for single queries; set gene name...
tree
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commitdiff
2016-01-25
gmungoc
JAL-1705 EnsemblGene added, and related refactoring
tree
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commitdiff
2016-01-21
gmungoc
JAL-1705 reworked Ensembl clients now fetching and...
tree
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commitdiff
2016-01-21
tcofoegbu
JAL-1919 basic support for importing and viewing mmCIF...
tree
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commitdiff
2016-01-08
gmungoc
JAL-1705 DbSourceProxy properties converted to methods...
tree
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commitdiff
2016-01-05
gmungoc
Merge remote-tracking branch 'origin/features/JAL-1705_...
tree
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commitdiff
2015-12-03
gmungoc
JAL-1827 code and comment tidy up
tree
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commitdiff
2015-12-02
gmungoc
JAL-1827 refactored to handle missing residues better
tree
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commitdiff
2015-10-15
Jim Procter
Merge branch 'develop' into features/JAL-653_JAL-1766_h...
tree
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commitdiff
2015-10-15
Jim Procter
Merge branch 'develop' into features/JAL-1705_ensembl
tree
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commitdiff
2015-09-10
Jim Procter
JAL-1645 licencing for new files in test and utils
tree
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commitdiff
2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
tree
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commitdiff
2015-08-26
gmungoc
JAL-1270 test separated out of JalviewChimeraView
tree
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commitdiff
2015-08-26
gmungoc
JAL-1270 separated Jmol and Chimera tests to avoid...
tree
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commitdiff
2015-08-19
gmungoc
JAL-1742 suppress 'add chain' option for Jmol, pull...
tree
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commitdiff
2015-08-07
tcofoegbu
JAL-1824 updated caching procedure for pdb entries...
tree
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commitdiff
2015-07-23
tcofoegbu
JAL-1805 modified test setup's so the are ran for group...
tree
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commitdiff
2015-07-08
gmungoc
JAL-1759 merge from develop
tree
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commitdiff
2015-07-07
tcofoegbu
JAL-1805 test envirionment separation
tree
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commitdiff
2015-06-28
Jim Procter
JAL-1705 example GFF3 with network of ensembl relations...
tree
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commitdiff
2015-06-28
Jim Procter
JAL-1705 notes about retrieving feature relationships...
tree
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commitdiff
2015-06-28
Jim Procter
JAL-1705 test that the regex correctly processes ENSEMB...
tree
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commitdiff
2015-06-28
Jim Procter
JAL-1705 a second ENSEMBL test id/sequence pair
tree
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commitdiff
2015-06-28
Jim Procter
JAL-1705 renamed test for refactored class
tree
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commitdiff
2015-06-28
Jim Procter
JAL-1705 renamed SeqFetcherTest to EnsemblSeqProxyTest
tree
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commitdiff
2015-06-26
Jim Procter
JAL-1705 basic client & tests for rest.ensembl.org...
tree
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commitdiff
2015-06-24
Jim Procter
JAL-1782 refactored JAL-1766 JAL-653 tests to TestNG
tree
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commitdiff
2015-06-23
Jim Procter
Merge branch 'merge/develop_JAL-1780_JAL-653_JAL-1892...
tree
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commitdiff
2015-06-19
tcofoegbu
JAL-1270 test suits import order refactor
features/JAL-1270_JUnit-to-TestNG
features/JAL-1782_JUnit-to-TestNG
tree
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commitdiff
2015-06-19
tcofoegbu
JAL-1270 JUnit to TestNG refactoring
tree
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commitdiff
2015-06-08
Jim Procter
JAL-1766 basic test to retrieve named sequences from...
tree
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commitdiff
2015-06-08
Jim Procter
JAL-1766 test and buggy implementation of fasta index...
tree
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commitdiff
2015-06-05
gmungoc
JAL-1622 fix bug computing superposition + associated...
tree
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commitdiff
2015-05-14
gmungoc
JAL-1727 JAL-1270 obsolete DAS registry URL updated...
tree
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commitdiff
2015-05-14
gmungoc
JAL-1270 set Cache properties in setUp to ensure test...
tree
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commitdiff
2015-03-30
gmungoc
JAL-1596 refactoring to allow unit tests to start and...
tree
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commitdiff
2015-03-26
gmungoc
Merge develop to Release_2_8_3_Branch
tree
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commitdiff
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
tree
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commitdiff
2015-03-06
Jim Procter
Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
tree
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commitdiff
2015-01-07
gmungoc
JAL-1588 refactoring to StructureViewerBase and related
tree
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commitdiff
2014-12-22
Jim Procter
Merge: 497958b 68dcaa7
tree
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commitdiff
2014-12-15
Jim Procter
JAL-1620 version bump and release notes
tree
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commitdiff
2014-12-05
gmungoc
JAL-1609 refactored colour by sequence command, now...
tree
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commitdiff
2014-11-18
Jim Procter
JAL-674 make temperature factor, local secondary struct...
tree
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commitdiff
2014-11-04
Jim Procter
JAL-1213 test to ensure JMol extracted sequences are...
tree
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commitdiff
2014-10-21
Jim Procter
JAL-1551 formatting
tree
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commitdiff
2014-10-10
Jim Procter
JAL-674 employ new signature in Annotate3D service...
tree
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commitdiff
2014-10-06
Jim Procter
JAL-654 format and refactor test demonstrating PDB...
tree
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commitdiff
2014-07-18
j.procter@dundee...
JAL-1028 JAL-1142 refactor test to allow reuse of secon...
tree
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commitdiff
2014-07-04
j.procter@dundee...
JAL-1333 more abstraction and refactoring and working...
tree
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commitdiff
2014-07-02
Jim Procter
JAL-1333 test suite for key functionality of java inter...
tree
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commitdiff
2014-06-06
Jim Procter
JAL-1517 source formatting
tree
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commitdiff
2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
tree
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commitdiff
2013-05-26
Jim Procter
JAL-1269 refactored Annotate3d test and added additiona...
tree
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commitdiff
2013-02-13
jprocter
JAL-1213 JAL-674 robust test with an existing structure...
tree
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commitdiff
2013-02-13
jprocter
JAL-1213 JAL-674 - import a PDB file using Jmol data...
tree
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commitdiff
2013-02-11
jprocter
upgrade to latest paradise services model using JSon...
tree
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commitdiff
2012-12-04
jprocter
JAL-1213 JAL-674 robust test with an existing structure...
tree
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commitdiff
2012-12-04
jprocter
JAL-1213 JAL-674 - import a PDB file using Jmol data...
tree
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commitdiff
2012-08-21
jprocter
JAL-1142 - test to demonstrate mismatch between rnaview...
tree
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commitdiff
2012-08-20
jprocter
JAL-1140 test Annotate3D methods for SAM Riboswitch...
tree
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commitdiff