2022-12-16 |
Jim Procter | JAL-4109 examine -Djalview.loglevel on startup to decid... |
tree | commitdiff |
2022-12-14 |
Jim Procter | JAL-4107 fix test compilation issues |
tree | commitdiff |
2022-12-14 |
Jim Procter | Merge branch 'develop' into update_212_Dec_merge_with_2... |
tree | commitdiff |
2022-11-21 |
Jim Procter | Merge commit 'alpha/update_2_12_for_2_11_2_series_merge... |
tree | commitdiff |
2022-04-16 |
Jim Procter | JAL-3365 expand range of allowed DSSP secondary structu... |
tree | commitdiff |
2022-04-05 |
Jim Procter | JAL-3981 patch tests and remove errant imports |
tree | commitdiff |
2022-03-08 |
Jim Procter | JAL-3746 apply copyright to tests spike/try_spotless_JAL-3438 |
tree | commitdiff |
2022-03-08 |
Jim Procter | JAL-3438 spotless for 2.11.2.0 |
tree | commitdiff |
2022-02-11 |
Jim Procter | JAL-3949 - refactor logging from jalview.bin.Cache... |
tree | commitdiff |
2022-02-04 |
Jim Procter | JAL-3806 JAL-3725 update tests since CDS mappings now... |
tree | commitdiff |
2022-01-26 |
Jim Procter | JAL-3806 JAL-3725 propagate relaxed criteria for stop... |
tree | commitdiff |
2022-01-17 |
Jim Procter | JAL-3703 patch Windows save file test for 2.11.1 codebase patch/r2_11_1_branch_JAL-3703_closing_files |
tree | commitdiff |
2022-01-17 |
Ben Soares | JAL-3703 Test that fails in Windows only, and only... |
tree | commitdiff |
2022-01-12 |
Ben Soares | JAL-3703 Test that fails in Windows only, and only... |
tree | commitdiff |
2021-09-24 |
Jim Procter | JAL-3821 data file for failing test |
tree | commitdiff |
2021-09-23 |
Jim Procter | JAL-3821 less ambiguous base class name for EMBL and... |
tree | commitdiff |
2021-09-23 |
Jim Procter | JAL-3821 failing test |
tree | commitdiff |
2021-09-21 |
Ben Soares | JAL-3691 automatic insertion of Locale.ROOT to toUpperC... |
tree | commitdiff |
2021-09-17 |
gmungoc | JAL-1260 unit test for FileFormats updated for GenBank/ENA |
tree | commitdiff |
2021-09-17 |
gmungoc | JAL-1260 file formats and IdentifyFile updates for... |
tree | commitdiff |
2021-09-17 |
gmungoc | JAL-1260 refactored GenBank (and EMBL) flat file parser |
tree | commitdiff |
2021-09-16 |
gmungoc | JAL-3779 apply properties to all groups with given... |
tree | commitdiff |
2021-07-25 |
Jim Procter | JAL-3853 - tweak test again - since failed a few commit... |
tree | commitdiff |
2021-07-22 |
Jim Procter | JAL-3853 patch sequence annotation report code and... |
tree | commitdiff |
2021-02-17 |
Jim Procter | Merge branch 'feature/JAL-3692enaEndpoint' into patch... |
tree | commitdiff |
2020-12-14 |
Jim Procter | Merge branch 'Jalview-JS/develop' into merge_js_develop |
tree | commitdiff |
2020-12-14 |
Ben Soares | JAL-3628 Test for doubly saved single backup file scheme |
tree | commitdiff |
2020-10-28 |
Jim Procter | JAL-3725 fix tests for EMBLFlatFile parser when mapping... |
tree | commitdiff |
2020-09-21 |
Jim Procter | Merge branch 'merge_review/JAL-3490_2_11_2_develop... |
tree | commitdiff |
2020-08-21 |
Jim Procter | JAL-3675 2.11.1.1 java 8 compatible patch for JAL-3615... |
tree | commitdiff |
2020-08-21 |
Jim Procter | JAL-3615 code tidy, improve unit test |
tree | commitdiff |
2020-08-18 |
gmungoc | JAL-2656 Java 8 compatible test for gzipped, refactored... |
tree | commitdiff |
2020-08-18 |
gmungoc | JAL-3692 parse multiline CDS location correctly |
tree | commitdiff |
2020-08-17 |
Jim Procter | JAL-3490 merged with 2.11.2 develop |
tree | commitdiff |
2020-08-17 |
Jim Procter | Merge branch 'patch/Release_2_11_1_Branch_patch_JAL... |
tree | commitdiff |
2020-08-05 |
Jim Procter | JAL-3628 init log after loading testProps for each... |
tree | commitdiff |
2020-08-05 |
gmungoc | JAL-3692 parse multiline feature qualifiers and escaped... |
tree | commitdiff |
2020-08-05 |
gmungoc | JAL-3692 parse multiline feature qualifiers and escaped... |
tree | commitdiff |
2020-08-03 |
Jim Procter | JAL-3692 fix up test for 2.11.1 series datamodel API |
tree | commitdiff |
2020-08-03 |
gmungoc | JAL-3692 set CDS /product as EMBLCDSPROTEIN description |
tree | commitdiff |
2020-08-03 |
gmungoc | JAL-3692 refactor/complete parsing, more unit test... |
tree | commitdiff |
2020-08-03 |
gmungoc | JAL-3692 parse DE for description, and other refactoring... |
tree | commitdiff |
2020-08-03 |
gmungoc | JAL-3692 unit test (J03321), fixes, dbrefs; todo: prote... |
tree | commitdiff |
2020-07-27 |
gmungoc | JAL-2656 JAL-3615 check response headers to test for... |
tree | commitdiff |
2020-07-27 |
gmungoc | JAL-3615 used gzip endpoints for Pfam and Rfam |
tree | commitdiff |
2020-07-27 |
gmungoc | JAL-3692 set CDS /product as EMBLCDSPROTEIN description |
tree | commitdiff |
2020-07-27 |
gmungoc | JAL-3692 refactor/complete parsing, more unit test... |
tree | commitdiff |
2020-07-24 |
gmungoc | JAL-3692 parse DE for description, and other refactoring... |
tree | commitdiff |
2020-07-22 |
gmungoc | JAL-3692 unit test (J03321), fixes, dbrefs; todo: prote... |
tree | commitdiff |
2020-07-02 |
gmungoc | JAL-2656 JAL-3615 check response headers to test for... |
tree | commitdiff |
2020-07-02 |
gmungoc | JAL-3615 used gzip endpoints for Pfam and Rfam |
tree | commitdiff |
2020-06-29 |
Jim Procter | Merge branch 'bug/JAL-3490findSpanHiddenGaps' into... |
tree | commitdiff |
2020-06-14 |
BobHanson | JAL-3445 BSML BBB file format. |
tree | commitdiff |
2020-06-13 |
BobHanson | Merge branch 'Jalview-JS/develop.JAL-3445-BSML-reader... |
tree | commitdiff |
2020-06-10 |
BobHanson | JAL-3446 from applet, JAL-3584 tooltip fixes <br> and... |
tree | commitdiff |
2020-06-03 |
BobHanson | JAL-3446 from JAL-3253 ApplicationSingletonProvider... |
tree | commitdiff |
2020-06-02 |
BobHanson | JAL-3446 JAL-3253 JAL-3445 BSML bbb XML format reader... Jalview-JS/develop.JAL-3445-BSML-reader |
tree | commitdiff |
2020-06-02 |
BobHanson | JAL-3446 JAL-3253 JAL-3445 BSML bbb XML format reader... |
tree | commitdiff |
2020-06-02 |
BobHanson | JAL-3626 from JAL-3253-applet Cache applicationProperti... |
tree | commitdiff |
2020-05-18 |
Jim Procter | Merge branch 'alpha/JAL-3362_Jalview_212_alpha' into... |
tree | commitdiff |
2020-05-18 |
gmungoc | JAL-3529 test updated for revised signature of getDBRefs() |
tree | commitdiff |
2020-05-18 |
gmungoc | Merge branch 'Jalview-JS/develop' into develop |
tree | commitdiff |
2020-04-23 |
Jim Procter | Merge branch 'develop' into alpha/JAL-3362_Jalview_212_... |
tree | commitdiff |
2020-04-21 |
Jim Procter | Merge branch 'bug/JAL-3574filterByPOS' into documentati... |
tree | commitdiff |
2020-04-21 |
Jim Procter | Merge branch 'bug/JAL-3567virtualFeatureCoordinates... |
tree | commitdiff |
2020-04-17 |
gmungoc | JAL-3567 unit tests for linked feature tooltips |
tree | commitdiff |
2020-04-16 |
gmungoc | JAL-3567 report mapped location for virtual features... |
tree | commitdiff |
2020-04-14 |
Jim Procter | Merge branch 'bug/JAL-3529_uniprotidsinstockholm' into... |
tree | commitdiff |
2020-04-14 |
Jim Procter | JAL-3529 revert ordering of DBRef addition so it reflec... |
tree | commitdiff |
2020-04-13 |
gmungoc | JAL-3574 Matcher with integer/long value pattern (e... |
tree | commitdiff |
2020-03-30 |
gmungoc | Merge branch 'develop' into Jalview-JS/develop |
tree | commitdiff |
2020-03-06 |
gmungoc | Merge branch 'feature/JAL-3468featureDescriptionEllipsi... |
tree | commitdiff |
2020-03-06 |
Ben Soares | JAL-3529 improved regex in Stockholm UNIPROT accession... |
tree | commitdiff |
2020-03-04 |
Ben Soares | JAL-3468 Fixed tests and added test for max-length... |
tree | commitdiff |
2020-02-18 |
Jim Procter | JAL-3529 test for AC <Uniprot/EMBL> rather than DR... |
tree | commitdiff |
2020-02-18 |
Jim Procter | JAL-3529 assert Uniprot refs must be provided as primar... |
tree | commitdiff |
2020-02-17 |
Jim Procter | JAL-3536 failing test and test data |
tree | commitdiff |
2020-02-14 |
Jim Procter | JAL-3529 more detailed asserts to detect whitespace... |
tree | commitdiff |
2020-02-14 |
Jim Procter | JAL-3529 failing test for bug |
tree | commitdiff |
2020-01-24 |
gmungoc | JAL=3121 more data format validation/tests, help text... feature/JAL-3121gffAttributeMap |
tree | commitdiff |
2020-01-23 |
gmungoc | JAL-3121 'attributes map' in GFF3 without special ... |
tree | commitdiff |
2019-12-11 |
gmungoc | JAL-3490 revised layout and search algorithm (more... |
tree | commitdiff |
2019-11-01 |
gmungoc | JAL-3468 unit tests updated for changes |
tree | commitdiff |
2019-10-08 |
gmungoc | Merge branch 'develop' into Jalview-JS/develop |
tree | commitdiff |
2019-09-20 |
Jim Procter | JAL-3070 JAL-2507 fix up test output and honour the... |
tree | commitdiff |
2019-08-22 |
gmungoc | JAL-3121 slightly cleaner parsing of, and unit test... |
tree | commitdiff |
2019-08-22 |
gmungoc | JAL-3121 round trip GFF attributes including map-valued... |
tree | commitdiff |
2019-08-13 |
Jim Procter | Merge branch 'alpha/JAL-3362_Jalview_212_alpha' into... |
tree | commitdiff |
2019-07-26 |
gmungoc | Merge branch 'features/JAL-3375vcfValidation' into |
tree | commitdiff |
2019-07-26 |
gmungoc | JAL-1793 only decode specific special characters in... |
tree | commitdiff |
2019-07-26 |
gmungoc | JAL-3376 capture VCF POS, ID, QUAL, FILTER as feature... features/JAL-3375vcfValidation |
tree | commitdiff |
2019-07-26 |
gmungoc | JAL-3375 format validate VCF Integer and Float fields |
tree | commitdiff |
2019-07-25 |
gmungoc | JAL-3375 ignore '.' values for VCF data |
tree | commitdiff |
2019-07-16 |
gmungoc | JAL-3210 Merge branch 'develop' into trialMerge |
tree | commitdiff |
2019-07-08 |
gmungoc | JAL-3187 derived peptide variants tweaks and tests |
tree | commitdiff |
2019-07-05 |
gmungoc | JAL-1793 apply URL decoding when saving VCF attribute... |
tree | commitdiff |
2019-06-18 |
gmungoc | JAL-3304 option to export linked features in Jalview... |
tree | commitdiff |
2019-06-17 |
gmungoc | JAL-3187 update unit test - protein variants not now... |
tree | commitdiff |
2019-06-07 |
tva | JAL-3291 issue fixed, passing tests added |
tree | commitdiff |
2019-06-07 |
tva | JAL-3285 fix errors in tests introduced by merge |
tree | commitdiff |
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