JAL-2629 fix expected length error for hmmbuild by uniquifying sequences
[jalview.git] / test / jalview / io /
2017-08-04 TZVanaaltenJAL-2629 multiple HMMs can now be dropped onto an alignment
2017-08-02 TZVanaaltenJAL-2599 fix issue where parser exported map annotation...
2017-07-24 tzvanaaltenJAL-2599 add a couple of test files not included in...
2017-07-18 TZVanaaltenJAL-2599 modified state transition probability storage
2017-06-29 TZVanaaltentransferred the storage position of the HMM to annotations
2017-06-23 TZVanaaltentest HMMER colour scheme
2017-06-22 TZVanaaltenfully integrate HMMER3 file format into Jalview
2017-06-20 TZVanaaltencreate method to test HMM model as string
2017-06-20 TZVanaaltenrestructure file exporter
2017-06-15 TZVanaaltenadd tests for HMMFile class
2017-05-31 tcofoegbuFixed failing tests
2017-05-29 Jim ProcterMerge branch 'features/JAL-2465_No-mapping_Jmol-structu...
2017-05-15 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholm' into...
2017-05-15 Jim ProcterJAL-2507 - required callers to specify exact ignore...
2017-05-12 Jim ProcterMerge branch 'features/JAL-2388OverviewWindow' into...
2017-05-11 Jim ProcterJAL-2507 JAL-2509 allow whitespace==null for annotation...
2017-05-09 Jim ProcterJAL-2507 spit out tests for ‘{‘ WUSS io from ‘[‘ WUSS...
2017-05-09 Jim ProcterJAL-2509 verify stockholm parser’s bracket regex is...
2017-05-09 Jim ProcterJAL-2507 JAL-2509 extend test to cover round trip of...
2017-05-09 tcofoegbuJAL-2520 unit test for improvement to download structur...
2017-05-09 Jim ProcterJAL-2507 simplify round trip test via AppletFormatAdapter
2017-05-09 Jim ProcterJAL-2507 test for alignment+rna annotation -> Stockholm...
2017-05-05 kiramtMerge remote-tracking branch
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into
2017-05-04 Jim ProcterJAL-1656 make RNAML->Stockholm round trip test pass...
2017-05-04 Jim ProcterJAL-2507 JAL-2509 allow differences in visibility of...
2017-05-04 Jim ProcterJAL-2507 JAL-2509 new assert to compare secondary struc...
2017-05-02 gmungocJAL-2499 JAL-2403 push 'configure for view' inside...
2017-05-02 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-05-01 gmungocJAL-2489 JAL-2371 reinstate calls to
2017-04-28 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-04-27 Jim ProcterJAL-1933 patch jalview/io/testProps.jvprops to show... features/JAL-1933_occupancy
2017-04-27 Jim ProcterJAL-1933 patch jalview/io/testProps.jvprops to show...
2017-04-26 kiramtMerge remote-tracking branch 'origin/features/JAL-2388h...
2017-04-26 kiramtJAL-2388 Update to hidden columns/column selection...
2017-04-26 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-04-26 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-04-25 tcofoegbuJAL-2489 edited unit test code comment
2017-04-25 tcofoegbuJAL-2489 Unit test for bug
2017-04-25 kiramtJAL-2388 Working hidden regions hide/show in desktop
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection...
2017-03-29 gmungocJAL-2416 revert to '*' not '-' in score matrix, handle...
2017-03-28 gmungocJAL-2403 JAL-2416 pairwise score unexpected symbols...
2017-03-28 gmungocJAL-2416 more test coverage of matrix parser
2017-03-27 gmungocJAL-2416 parse score matrices in either NCBI or AAindex...
2017-03-24 gmungocJAL-2428 simplify TreeModel constructors, add getOrigin...
2017-03-06 gmungocJAL-2428 separate TreeModel from TreeBuilder/NJTree...
2017-02-21 gmungocJAL-2416 support roundtrip print/parse of ScoreMatrix
2017-02-17 gmungocJAL-2416 allow space in score matrix name
2017-02-14 gmungocParsing moved to (new) ScoreMatrixFile, drag and drop...
2017-01-31 gmungocJAL-2371 rename global/viewportColourScheme to residueS...
2017-01-31 gmungocJAL-2385 more tests/bug fixes mostly for gui.SliderPane...
2017-01-27 gmungocJAL-2360 JAL-2371 updates from review CR-JAL-1
2017-01-26 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit...
2017-01-26 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-26 gmungocJAL-2344 test fix and code tidy for review comments
2017-01-17 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit...
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-12 gmungocJAL-2344 now flagging formats as 'identifiable' instead...
2017-01-11 gmungocJAL-2344 FileFormats singleton for formats, FileFormatI...
2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI
2016-12-20 gmungocJAL-2360 ColourSchemes holds configured schemes, AlignF...
2016-12-16 gmungocJAL-2360 getColour() renamed to getColourScheme(),...
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum,
2016-12-12 gmungocJAL-2361 extract methods to (re-)build colour menu
2016-11-28 gmungocMerge branch 'develop' into trialMerge
2016-11-28 gmungocJAL-2345 cache generated ImageIcon per file path
2016-11-25 gmungocMerge branch 'develop' into trialMerge
2016-11-25 gmungocJAL-2344 correct roundtrip test to exclude Jalview...
2016-11-24 tcofoegbuJAL-2326 added setup method for JvOptionPane in all... features/JAL-2326_JOptionPane-refactoring
2016-11-24 gmungocFurther tweaks to get tests passing
2016-11-16 Jim ProcterMerge branch 'features/JAL-1723_sequenceReport' into...
2016-11-14 tcofoegbuJAL-2322 Refactored unified architecture for data ...
2016-11-11 tcofoegbuJAL-2277 Refactored out duplicated method - printUnwrap...
2016-11-07 gmungocJAL-1805 groups=Functional added where missing
2016-11-03 kiramtJAL-2308 Fixed hiddenColsTest bug/JAL-2308
2016-11-03 tcofoegbuJAL-2312 unit test for bug fix - repeated mapping gener...
2016-10-31 gmungocMerge branch 'develop' into features/JAL-1723_sequenceR...
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-10-05 Jim ProcterJAL-2189 apply license
2016-10-05 Jim ProcterJAL-2189 format tests
2016-09-28 Jim ProcterJAL-2235 patch tests where self-reference was used...
2016-09-19 Jim ProcterJAL-2175 JAL-2170 fix sense for assertEquals
2016-09-19 tcofoegbumerge
2016-09-16 Jim ProcterJAL-2164 update asserts for padded residue numbers...
2016-09-13 tcofoegbuRevert "JAL-2164 JAL-1919 disabled and removed PDB...
2016-09-13 tcofoegbuJAL-2164 JAL-1919 disabled and removed PDB file parser...
2016-09-07 Jim ProcterMerge branch 'develop' into bug/JAL-1803_JAL-2157
2016-09-07 Jim ProcterJAL-1803 switched so ‘expected’ is constant in assert
2016-09-07 gmungocJAL-2164 fix failing test
2016-09-04 Jim ProcterJAL-1803 patch test: PDBEntry.getFile() will always...
2016-09-01 gmungocJAL-1421 add generics to NJTree, refactor recursive...
2016-08-30 Jim ProcterJAL-2154 doc & AssertError trap for known failure case...
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum
2016-08-29 Jim ProcterJAL-2154 endless loop fixed (hopefully :) )
2016-08-29 Jim ProcterJAL-2154 catch insertion of duplicate CDS after retriev...
2016-08-26 Jim ProcterJAL-2154 ENSEMBL and Uniprot tests
2016-08-26 Jim ProcterJAL-2154 report any db fetch failures as a fail at end
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