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JAL-2629 fix expected length error for hmmbuild by uniquifying sequences
[jalview.git] / test / jalview / io /
2017-08-04 TZVanaaltenJAL-2629 multiple HMMs can now be dropped onto an alignment tree | commitdiff
2017-08-02 TZVanaaltenJAL-2599 fix issue where parser exported map annotation... tree | commitdiff
2017-07-24 tzvanaaltenJAL-2599 add a couple of test files not included in... tree | commitdiff
2017-07-18 TZVanaaltenJAL-2599 modified state transition probability storage tree | commitdiff
2017-06-29 TZVanaaltentransferred the storage position of the HMM to annotations tree | commitdiff
2017-06-23 TZVanaaltentest HMMER colour scheme tree | commitdiff
2017-06-22 TZVanaaltenfully integrate HMMER3 file format into Jalview tree | commitdiff
2017-06-20 TZVanaaltencreate method to test HMM model as string tree | commitdiff
2017-06-20 TZVanaaltenrestructure file exporter tree | commitdiff
2017-06-15 TZVanaaltenadd tests for HMMFile class tree | commitdiff
2017-05-31 tcofoegbuFixed failing tests tree | commitdiff
2017-05-29 Jim ProcterMerge branch 'features/JAL-2465_No-mapping_Jmol-structu... tree | commitdiff
2017-05-15 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholm' into... tree | commitdiff
2017-05-15 Jim ProcterJAL-2507 - required callers to specify exact ignore... tree | commitdiff
2017-05-12 Jim ProcterMerge branch 'features/JAL-2388OverviewWindow' into... tree | commitdiff
2017-05-11 Jim ProcterJAL-2507 JAL-2509 allow whitespace==null for annotation... tree | commitdiff
2017-05-09 Jim ProcterJAL-2507 spit out tests for ‘{‘ WUSS io from ‘[‘ WUSS... tree | commitdiff
2017-05-09 Jim ProcterJAL-2509 verify stockholm parser’s bracket regex is... tree | commitdiff
2017-05-09 Jim ProcterJAL-2507 JAL-2509 extend test to cover round trip of... tree | commitdiff
2017-05-09 tcofoegbuJAL-2520 unit test for improvement to download structur... tree | commitdiff
2017-05-09 Jim ProcterJAL-2507 simplify round trip test via AppletFormatAdapter tree | commitdiff
2017-05-09 Jim ProcterJAL-2507 test for alignment+rna annotation -> Stockholm... tree | commitdiff
2017-05-05 kiramtMerge remote-tracking branch tree | commitdiff
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges tree | commitdiff
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into tree | commitdiff
2017-05-04 Jim ProcterJAL-1656 make RNAML->Stockholm round trip test pass... tree | commitdiff
2017-05-04 Jim ProcterJAL-2507 JAL-2509 allow differences in visibility of... tree | commitdiff
2017-05-04 Jim ProcterJAL-2507 JAL-2509 new assert to compare secondary struc... tree | commitdiff
2017-05-02 gmungocJAL-2499 JAL-2403 push 'configure for view' inside... tree | commitdiff
2017-05-02 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-05-01 gmungocJAL-2489 JAL-2371 reinstate calls to tree | commitdiff
2017-04-28 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 patch jalview/io/testProps.jvprops to show... features/JAL-1933_occupancy tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 patch jalview/io/testProps.jvprops to show... tree | commitdiff
2017-04-26 kiramtMerge remote-tracking branch 'origin/features/JAL-2388h... tree | commitdiff
2017-04-26 kiramtJAL-2388 Update to hidden columns/column selection... tree | commitdiff
2017-04-26 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-04-26 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-04-25 tcofoegbuJAL-2489 edited unit test code comment tree | commitdiff
2017-04-25 tcofoegbuJAL-2489 Unit test for bug tree | commitdiff
2017-04-25 kiramtJAL-2388 Working hidden regions hide/show in desktop tree | commitdiff
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection... tree | commitdiff
2017-03-29 gmungocJAL-2416 revert to '*' not '-' in score matrix, handle... tree | commitdiff
2017-03-28 gmungocJAL-2403 JAL-2416 pairwise score unexpected symbols... tree | commitdiff
2017-03-28 gmungocJAL-2416 more test coverage of matrix parser tree | commitdiff
2017-03-27 gmungocJAL-2416 parse score matrices in either NCBI or AAindex... tree | commitdiff
2017-03-24 gmungocJAL-2428 simplify TreeModel constructors, add getOrigin... tree | commitdiff
2017-03-06 gmungocJAL-2428 separate TreeModel from TreeBuilder/NJTree... tree | commitdiff
2017-02-21 gmungocJAL-2416 support roundtrip print/parse of ScoreMatrix tree | commitdiff
2017-02-17 gmungocJAL-2416 allow space in score matrix name tree | commitdiff
2017-02-14 gmungocParsing moved to (new) ScoreMatrixFile, drag and drop... tree | commitdiff
2017-01-31 gmungocJAL-2371 rename global/viewportColourScheme to residueS... tree | commitdiff
2017-01-31 gmungocJAL-2385 more tests/bug fixes mostly for gui.SliderPane... tree | commitdiff
2017-01-27 gmungocJAL-2360 JAL-2371 updates from review CR-JAL-1 tree | commitdiff
2017-01-26 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... tree | commitdiff
2017-01-26 gmungocMerge branch 'develop' into features/JAL-2360colourSche... tree | commitdiff
2017-01-26 gmungocJAL-2344 test fix and code tidy for review comments tree | commitdiff
2017-01-17 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... tree | commitdiff
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2360colourSche... tree | commitdiff
2017-01-12 gmungocJAL-2344 now flagging formats as 'identifiable' instead... tree | commitdiff
2017-01-11 gmungocJAL-2344 FileFormats singleton for formats, FileFormatI... tree | commitdiff
2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI tree | commitdiff
2016-12-20 gmungocJAL-2360 ColourSchemes holds configured schemes, AlignF... tree | commitdiff
2016-12-16 gmungocJAL-2360 getColour() renamed to getColourScheme(),... tree | commitdiff
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum, tree | commitdiff
2016-12-12 gmungocJAL-2361 extract methods to (re-)build colour menu tree | commitdiff
2016-11-28 gmungocMerge branch 'develop' into trialMerge tree | commitdiff
2016-11-28 gmungocJAL-2345 cache generated ImageIcon per file path tree | commitdiff
2016-11-25 gmungocMerge branch 'develop' into trialMerge tree | commitdiff
2016-11-25 gmungocJAL-2344 correct roundtrip test to exclude Jalview... tree | commitdiff
2016-11-24 tcofoegbuJAL-2326 added setup method for JvOptionPane in all... features/JAL-2326_JOptionPane-refactoring tree | commitdiff
2016-11-24 gmungocFurther tweaks to get tests passing tree | commitdiff
2016-11-16 Jim ProcterMerge branch 'features/JAL-1723_sequenceReport' into... tree | commitdiff
2016-11-14 tcofoegbuJAL-2322 Refactored unified architecture for data ... tree | commitdiff
2016-11-11 tcofoegbuJAL-2277 Refactored out duplicated method - printUnwrap... tree | commitdiff
2016-11-07 gmungocJAL-1805 groups=Functional added where missing tree | commitdiff
2016-11-03 kiramtJAL-2308 Fixed hiddenColsTest bug/JAL-2308 tree | commitdiff
2016-11-03 tcofoegbuJAL-2312 unit test for bug fix - repeated mapping gener... tree | commitdiff
2016-10-31 gmungocMerge branch 'develop' into features/JAL-1723_sequenceR... tree | commitdiff
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch tree | commitdiff
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... tree | commitdiff
2016-10-05 Jim ProcterJAL-2189 apply license tree | commitdiff
2016-10-05 Jim ProcterJAL-2189 format tests tree | commitdiff
2016-09-28 Jim ProcterJAL-2235 patch tests where self-reference was used... tree | commitdiff
2016-09-19 Jim ProcterJAL-2175 JAL-2170 fix sense for assertEquals tree | commitdiff
2016-09-19 tcofoegbumerge tree | commitdiff
2016-09-16 Jim ProcterJAL-2164 update asserts for padded residue numbers... tree | commitdiff
2016-09-13 tcofoegbuRevert "JAL-2164 JAL-1919 disabled and removed PDB... tree | commitdiff
2016-09-13 tcofoegbuJAL-2164 JAL-1919 disabled and removed PDB file parser... tree | commitdiff
2016-09-07 Jim ProcterMerge branch 'develop' into bug/JAL-1803_JAL-2157 tree | commitdiff
2016-09-07 Jim ProcterJAL-1803 switched so ‘expected’ is constant in assert tree | commitdiff
2016-09-07 gmungocJAL-2164 fix failing test tree | commitdiff
2016-09-04 Jim ProcterJAL-1803 patch test: PDBEntry.getFile() will always... tree | commitdiff
2016-09-01 gmungocJAL-1421 add generics to NJTree, refactor recursive... tree | commitdiff
2016-08-30 Jim ProcterJAL-2154 doc & AssertError trap for known failure case... tree | commitdiff
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum tree | commitdiff
2016-08-29 Jim ProcterJAL-2154 endless loop fixed (hopefully :) ) tree | commitdiff
2016-08-29 Jim ProcterJAL-2154 catch insertion of duplicate CDS after retriev... tree | commitdiff
2016-08-26 Jim ProcterJAL-2154 ENSEMBL and Uniprot tests tree | commitdiff
2016-08-26 Jim ProcterJAL-2154 report any db fetch failures as a fail at end tree | commitdiff
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