2020-08-21 |
Jim Procter | JAL-3675 2.11.1.1 java 8 compatible patch for JAL-3615... |
tree | commitdiff |
2020-08-18 |
gmungoc | JAL-3692 parse multiline CDS location correctly |
tree | commitdiff |
2020-08-17 |
Jim Procter | Merge branch 'patch/Release_2_11_1_Branch_patch_JAL... |
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2020-08-05 |
Jim Procter | JAL-3628 init log after loading testProps for each... |
tree | commitdiff |
2020-08-05 |
gmungoc | JAL-3692 parse multiline feature qualifiers and escaped... |
tree | commitdiff |
2020-08-03 |
Jim Procter | JAL-3692 fix up test for 2.11.1 series datamodel API |
tree | commitdiff |
2020-08-03 |
gmungoc | JAL-3692 set CDS /product as EMBLCDSPROTEIN description |
tree | commitdiff |
2020-08-03 |
gmungoc | JAL-3692 refactor/complete parsing, more unit test... |
tree | commitdiff |
2020-08-03 |
gmungoc | JAL-3692 parse DE for description, and other refactoring... |
tree | commitdiff |
2020-08-03 |
gmungoc | JAL-3692 unit test (J03321), fixes, dbrefs; todo: prote... |
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2020-07-27 |
gmungoc | JAL-2656 JAL-3615 check response headers to test for... |
tree | commitdiff |
2020-07-27 |
gmungoc | JAL-3615 used gzip endpoints for Pfam and Rfam |
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2020-06-29 |
Jim Procter | Merge branch 'bug/JAL-3490findSpanHiddenGaps' into... |
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2020-04-21 |
Jim Procter | Merge branch 'bug/JAL-3574filterByPOS' into documentati... |
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2020-04-21 |
Jim Procter | Merge branch 'bug/JAL-3567virtualFeatureCoordinates... |
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2020-04-17 |
gmungoc | JAL-3567 unit tests for linked feature tooltips |
tree | commitdiff |
2020-04-16 |
gmungoc | JAL-3567 report mapped location for virtual features... |
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2020-04-14 |
Jim Procter | Merge branch 'bug/JAL-3529_uniprotidsinstockholm' into... |
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2020-04-14 |
Jim Procter | JAL-3529 revert ordering of DBRef addition so it reflec... |
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2020-04-13 |
gmungoc | JAL-3574 Matcher with integer/long value pattern (e... |
tree | commitdiff |
2020-03-06 |
gmungoc | Merge branch 'feature/JAL-3468featureDescriptionEllipsi... |
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2020-03-06 |
Ben Soares | JAL-3529 improved regex in Stockholm UNIPROT accession... |
tree | commitdiff |
2020-03-04 |
Ben Soares | JAL-3468 Fixed tests and added test for max-length... |
tree | commitdiff |
2020-02-18 |
Jim Procter | JAL-3529 test for AC <Uniprot/EMBL> rather than DR... |
tree | commitdiff |
2020-02-18 |
Jim Procter | JAL-3529 assert Uniprot refs must be provided as primar... |
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2020-02-17 |
Jim Procter | JAL-3536 failing test and test data |
tree | commitdiff |
2020-02-14 |
Jim Procter | JAL-3529 more detailed asserts to detect whitespace... |
tree | commitdiff |
2020-02-14 |
Jim Procter | JAL-3529 failing test for bug |
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2020-01-24 |
gmungoc | JAL=3121 more data format validation/tests, help text... feature/JAL-3121gffAttributeMap |
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2020-01-23 |
gmungoc | JAL-3121 'attributes map' in GFF3 without special ... |
tree | commitdiff |
2019-12-11 |
gmungoc | JAL-3490 revised layout and search algorithm (more... |
tree | commitdiff |
2019-11-01 |
gmungoc | JAL-3468 unit tests updated for changes |
tree | commitdiff |
2019-08-22 |
gmungoc | JAL-3121 slightly cleaner parsing of, and unit test... |
tree | commitdiff |
2019-08-22 |
gmungoc | JAL-3121 round trip GFF attributes including map-valued... |
tree | commitdiff |
2019-07-26 |
gmungoc | Merge branch 'features/JAL-3375vcfValidation' into |
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2019-07-26 |
gmungoc | JAL-1793 only decode specific special characters in... |
tree | commitdiff |
2019-07-26 |
gmungoc | JAL-3376 capture VCF POS, ID, QUAL, FILTER as feature... features/JAL-3375vcfValidation |
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2019-07-26 |
gmungoc | JAL-3375 format validate VCF Integer and Float fields |
tree | commitdiff |
2019-07-25 |
gmungoc | JAL-3375 ignore '.' values for VCF data |
tree | commitdiff |
2019-07-08 |
gmungoc | JAL-3187 derived peptide variants tweaks and tests |
tree | commitdiff |
2019-07-05 |
gmungoc | JAL-1793 apply URL decoding when saving VCF attribute... |
tree | commitdiff |
2019-06-18 |
gmungoc | JAL-3304 option to export linked features in Jalview... |
tree | commitdiff |
2019-06-17 |
gmungoc | JAL-3187 update unit test - protein variants not now... |
tree | commitdiff |
2019-06-06 |
gmungoc | JAL-3187 deletions (of Castor code) after merge from... |
tree | commitdiff |
2019-06-06 |
gmungoc | Merge branch 'develop' into trialMerge |
tree | commitdiff |
2019-05-27 |
gmungoc | JAL-3141 test file in test folder not examples |
tree | commitdiff |
2019-05-24 |
Ben Soares | JAL-3141 Fixed tests |
tree | commitdiff |
2019-05-24 |
Ben Soares | JAL-3141 Reworked a lot of BackupFiles to allow the... |
tree | commitdiff |
2019-04-29 |
gmungoc | JAL-2738 JAL-2743 update unit test to match new VCF... |
tree | commitdiff |
2019-03-20 |
Ben Soares | JAL-3130 Lots of deprecation fixes. See utils/deprecat... |
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2019-03-19 |
Ben Soares | JAL-3130 Merge of JAL-3130_Java_11_investigations-Ben... |
tree | commitdiff |
2019-03-12 |
gmungoc | JAL-1270 missing 'alwaysRun=true' added to setup/teardown |
tree | commitdiff |
2019-03-11 |
gmungoc | JAL-1270 JAL-2416 JAL-2839 set alwaysRun=true in test... |
tree | commitdiff |
2019-03-04 |
gmungoc | Merge branch 'bug/JAL-3120restoreFeatureColour' into... |
tree | commitdiff |
2019-03-01 |
gmungoc | Merge branch 'bug/JAL-2791exportFilteredFeature' into... |
tree | commitdiff |
2019-02-28 |
gmungoc | Merge remote-tracking branch 'origin/feature/JAL-3141_b... |
tree | commitdiff |
2019-02-28 |
Jim Procter | Merge branch 'feature/JAL-3141_backupfiles_for211'... merge/develop_feature/JAL-3141_backupfiles_for211 |
tree | commitdiff |
2019-02-22 |
gmungoc | JAL-2738 don't set AF as feature score |
tree | commitdiff |
2019-01-28 |
Ben Soares | JAL-3141 fixed test |
tree | commitdiff |
2019-01-21 |
gmungoc | JAL-3187 unit tests updated and errors caught |
tree | commitdiff |
2019-01-21 |
Ben Soares | JAL-3141 Fixed tests for new placement of suffix after... |
tree | commitdiff |
2019-01-21 |
gmungoc | JAL-3187 (hacked up) show complement features on struct... |
tree | commitdiff |
2019-01-18 |
Jim Procter | Merge branch 'feature/JAL-3063jaxbNoCastor' into featur... |
tree | commitdiff |
2019-01-16 |
Jim Procter | Merge branch 'features/pca_jaxb_datasetrefs_JAL-3171_JA... |
tree | commitdiff |
2019-01-09 |
Ben Soares | JAL-3141 removed redundant method to tests |
tree | commitdiff |
2019-01-08 |
Ben Soares | JAL-3141 Made some suggested changes from code review |
tree | commitdiff |
2018-12-19 |
Jim Procter | Merge branch 'features/JAL-1767pcaInProject' into bug... |
tree | commitdiff |
2018-12-19 |
gmungoc | JAL-3178 include non-positional features in their group... bug/JAL-2791exportFilteredFeature |
tree | commitdiff |
2018-12-13 |
Ben Soares | JAL-3130 Fixing a few more tests that pass on a Mac... |
tree | commitdiff |
2018-12-06 |
Ben Soares | JAL-3130 incorporating feature/JAL-3063jaxbNoCastor... |
tree | commitdiff |
2018-12-03 |
gmungoc | JAL-3063 Castor removed from codebase |
tree | commitdiff |
2018-11-08 |
gmungoc | JAL-1889 unit test tweaks for running on server |
tree | commitdiff |
2018-11-05 |
Ben Soares | JAL-3141 Slightly improved message and more thorough... |
tree | commitdiff |
2018-11-02 |
Ben Soares | JAL-3141 Tests now available and working, bringing... |
tree | commitdiff |
2018-10-09 |
Jim Procter | JAL-3127 pass reference to AlignViewportI when creating... |
tree | commitdiff |
2018-09-27 |
gmungoc | JAL-2791 refactored Export Features to apply all visibi... |
tree | commitdiff |
2018-09-21 |
gmungoc | JAL-3120 preserve feature colour/mincolour/maxcolour... bug/JAL-3120restoreFeatureColour |
tree | commitdiff |
2018-09-11 |
Jim Procter | Merge branch 'develop' into releases/Release_2_11_Branch |
tree | commitdiff |
2018-08-03 |
Ben Soares | JAL-3061 |
tree | commitdiff |
2018-08-02 |
Ben Soares | JAL-3053 |
tree | commitdiff |
2018-07-31 |
bsoares | Stockholm file for test |
tree | commitdiff |
2018-05-28 |
gmungoc | Merge remote-tracking branch 'origin/releases/Release_2... |
tree | commitdiff |
2018-05-24 |
gmungoc | JAL-2997 additional tests |
tree | commitdiff |
2018-05-23 |
gmungoc | JAL-2997 unit test |
tree | commitdiff |
2018-05-07 |
gmungoc | Merge branch 'releases/Release_2_10_4_Branch' into... |
tree | commitdiff |
2018-05-07 |
gmungoc | JAL-1767 unit test for save and restore PCA features/JAL-1767pcaInProject |
tree | commitdiff |
2018-04-06 |
Jim Procter | failing test for JAL-2223 |
tree | commitdiff |
2018-03-16 |
gmungoc | Merge remote-tracking branch 'origin/releases/Release_2... |
tree | commitdiff |
2018-03-15 |
gmungoc | JAL-2893 enabling Get Crossreferences to ENSEMBLGENOMES |
tree | commitdiff |
2018-03-07 |
Jim Procter | Merge branch 'releases/Release_2_10_4_Branch' into... |
tree | commitdiff |
2018-02-27 |
Jim Procter | Merge branch 'feature/JAL-2759' into merge/JAL-2759_2104 |
tree | commitdiff |
2018-02-20 |
Jim Procter | Merge branch 'releases/Release_2_10_4_Branch' into... |
tree | commitdiff |
2018-02-20 |
gmungoc | JAL-2897 updated unit test for code change features/JAL-1793VCF |
tree | commitdiff |
2018-02-07 |
Jim Procter | JAL-2780 JAL-2891 clear all windows always beforeTest... |
tree | commitdiff |
2018-01-30 |
gmungoc | JAL-1793 update spike build to latest incl stop and... |
tree | commitdiff |
2018-01-30 |
gmungoc | JAL-2897 generate peptide variants for synonymous codon... |
tree | commitdiff |
2018-01-10 |
gmungoc | JAL-1793 update spike branch to latest |
tree | commitdiff |
2018-01-09 |
gmungoc | JAL-2843 test roundtrip of feature colours and filters... |
tree | commitdiff |
2018-01-09 |
gmungoc | JAL-2843 unit tests for writing filters to Jalview... |
tree | commitdiff |
2017-12-19 |
Jim Procter | JAL-2880 disabled non-functional test - Jmol parser... |
tree | commitdiff |
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