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JAL-2629 fix expected length error for hmmbuild by uniquifying sequences
[jalview.git] / test / jalview / util /
2017-07-25 TZVanaaltenJAL-2616 add ability to perform random alignments withi... tree | commitdiff
2017-07-24 tzvanaaltenJAL-2616 add test class and test files for analyser tree | commitdiff
2017-07-21 TZVanaaltenJAL-2616 add ability to sort Pfam families and HMMs... tree | commitdiff
2017-07-20 TZVanaaltenJAL-2616 add documentation for probability analyser tree | commitdiff
2017-05-05 kiramtMerge remote-tracking branch tree | commitdiff
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges tree | commitdiff
2017-04-25 kiramtJAL-2388 Working hidden regions hide/show in desktop tree | commitdiff
2017-04-24 kiramtJAL-2388 Finished split of hidden columns and selected... tree | commitdiff
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection... tree | commitdiff
2017-03-24 gmungocJAL-838 move two callers off Comparison.PID and depreca... tree | commitdiff
2017-02-23 gmungocJAL-2403 JAL-1483 changes to ScoreModelI hierarchy... tree | commitdiff
2017-02-17 gmungocJAL-2413 extracted new method SetUtils.countDisjunction() tree | commitdiff
2017-02-08 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-01-27 gmungocJAL-2360 JAL-2371 updates from review CR-JAL-1 tree | commitdiff
2017-01-26 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2360colourSche... tree | commitdiff
2017-01-10 gmungocJAL-2377 avoid infinite loop formatting 1.0E-310 tree | commitdiff
2017-01-10 kiramtJAL-2316 Separate label/db name in UrlProviders. Unit... tree | commitdiff
2017-01-06 gmungocJAL-2360 findColour() with no args removed from ColourS... tree | commitdiff
2016-12-16 gmungocJAL-2360 added UserColourScheme.toAppletParameter+test... tree | commitdiff
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum, tree | commitdiff
2016-11-28 gmungocMerge branch 'develop' into trialMerge tree | commitdiff
2016-11-28 tcofoegbuMerge branch 'features/JAL-2326_JOptionPane-refactoring... tree | commitdiff
2016-11-25 gmungocMerge branch 'develop' into trialMerge tree | commitdiff
2016-11-24 tcofoegbuJAL-2326 added setup method for JvOptionPane in all... features/JAL-2326_JOptionPane-refactoring tree | commitdiff
2016-11-24 Jim ProcterJAL-2325 apply license to new source files tree | commitdiff
2016-11-22 Jim ProcterMerge branch 'features/JAL-1738_JAL-345_selectionfromhi... tree | commitdiff
2016-11-08 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-11-08 tcofoegbuJAL-2292 renamed method and improved implementation... tree | commitdiff
2016-11-07 gmungocJAL-2272 another test case tree | commitdiff
2016-11-07 gmungocJAL-2272 unit tests added for Platform.isControlDown tree | commitdiff
2016-11-04 tcofoegbuJAL-2292 Unit test for utility method for comparing... tree | commitdiff
2016-11-03 kiramtJAL-2281 Back out unit test update, as Mungo already... tree | commitdiff
2016-11-03 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2016-11-03 gmungocJAL-2281 test added to show searchRefs is now not case... tree | commitdiff
2016-11-03 kiramtJAL-2281 Minor unit test addition tree | commitdiff
2016-11-02 kiramtMerge remote-tracking branch 'origin/bug/JAL-2282'... tree | commitdiff
2016-11-02 kiramtJAL-2281 Unit test updates tree | commitdiff
2016-11-02 kiramtMerge remote-tracking branch 'origin/bug/JAL-2282'... tree | commitdiff
2016-11-02 kiramtJAL-2282 Renamed internal use of sequence id / db acces... tree | commitdiff
2016-11-02 kiramtJAL-2282 URLLink unit tests updated tree | commitdiff
2016-11-01 gmungocJAL-98 simplified repeat() method tree | commitdiff
2016-10-31 gmungocJAL-98 round when formatting dec places tree | commitdiff
2016-10-28 Jim ProcterJAL-966 JAL-1738 JAL-345 interfaces for SearchResults... tree | commitdiff
2016-10-27 gmungocJAL-2282 test assertions for 'other' dbsource spikes/geoff spikes/jpred tree | commitdiff
2016-10-27 gmungocJAL-98 refactor bleachColour() to ColorUtils tree | commitdiff
2016-10-26 gmungocMerge branch 'bug/JAL-98consensusMemory' into develop tree | commitdiff
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch tree | commitdiff
2016-10-24 kiramtUnit tests for UrlLink bug/JAL-2281JAL-2282 tree | commitdiff
2016-10-06 gmungocMerge branch 'develop' into bug/JAL-98consensusMemory tree | commitdiff
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... tree | commitdiff
2016-10-05 Jim ProcterJAL-2189 apply license tree | commitdiff
2016-10-05 Jim ProcterJAL-2189 format tests tree | commitdiff
2016-10-03 gmungocJAL-98 use Profile to store consensus, ResidueCount... tree | commitdiff
2016-10-03 gmungocJAL-98 bespoke fast percentage formatter for consensus... tree | commitdiff
2016-09-13 gmungocJAL-1803 extracted class ChainId to jalview.util.CaseIn... tree | commitdiff
2016-09-07 Jim ProcterJAL-2192 TODO tree | commitdiff
2016-09-06 gmungocJAL-2147 additional test coverage for findMappingsForSe... tree | commitdiff
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum tree | commitdiff
2016-07-14 Jim ProcterJAL-2147 findMappingsBetweenSequenceAndOthers for scopi... tree | commitdiff
2016-07-11 gmungocfile format enum wip changes tree | commitdiff
2016-06-15 Jim ProcterMerge branch 'develop' into features/JAL-2110_crossRefD... tree | commitdiff
2016-06-14 gmungocJAL-2114 more helpful reporting of parse failures tree | commitdiff
2016-06-14 gmungocJAL-1686 JAL-2110 equals and/or hashCode method added tree | commitdiff
2016-06-09 gmungocJAL-2110 work in progress tree | commitdiff
2016-06-03 gmungocJAL-2110 random stuff tree | commitdiff
2016-05-23 gmungocMerge branch 'develop' into features/JAL-2110_makeSense... tree | commitdiff
2016-05-20 gmungocJAL-2114 explicit invalid test cases added tree | commitdiff
2016-05-20 gmungocJAL-2114 accept "<123..178" or "123..>178" format tree | commitdiff
2016-05-20 gmungocJAL-2110 unit tests for and minor refactoring of CrossRef tree | commitdiff
2016-05-19 gmungocJAL-2114 added single-locus case and more error tests tree | commitdiff
2016-05-19 gmungocJAL-2114 parser + tests for GenBank location descriptors tree | commitdiff
2016-05-18 gmungocJAL-2049 use HGVS notation for variant on protein residue tree | commitdiff
2016-05-13 gmungocJAL-2105 capture Ensembl data version, check REST versi... tree | commitdiff
2016-04-22 gmungocJAL-2068 code and test for case of minValue == maxValue tree | commitdiff
2016-04-22 gmungocJAL-2068 convenience helper method for graduated score... tree | commitdiff
2016-04-14 gmungocJAL-1705 refactored/utility methods to detect e.g.... tree | commitdiff
2016-04-01 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... tree | commitdiff
2016-04-01 gmungocJAL-1705 tweak to MapList.toString for debugging tree | commitdiff
2016-04-01 gmungocJAL-1705 generalised getLength() to handle [start1... tree | commitdiff
2016-03-28 tcofoegbuJAL-1919 Fixed broken test in DBRefUtilsTest tree | commitdiff
2016-03-21 gmungocJAL-2029 many-to-many EnsemblCDS-to-Uniprot mappings tree | commitdiff
2016-03-15 gmungocJAL-1705 code tidy/comment only tree | commitdiff
2016-03-03 gmungocJAL-1705 include stop codons in derived CDS; support... tree | commitdiff
2016-03-01 gmungocJAL-1705 align CDS and peptide products to transcripts tree | commitdiff
2016-02-19 gmungocJAL-1705 lenient DBRef matcher added (accession id... tree | commitdiff
2016-02-19 gmungocJAL-1705 helper method for mapping excluding stop codon tree | commitdiff
2016-02-04 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... tree | commitdiff
2016-02-04 gmungocJAL-2005 added (stable) sort methods parameterised by tree | commitdiff
2016-01-28 gmungocMerge branch 'develop' into JAL-1705_trialMerge tree | commitdiff
2016-01-28 gmungocJAL-1705 merge contiguous ranges when constructing... tree | commitdiff
2016-01-21 gmungocJAL-1705 isFromForwardStrand added; toString (for debug... tree | commitdiff
2016-01-21 gmungocJAL-1705 canonicalise ENSEMBL name; code tidy tree | commitdiff
2016-01-11 gmungocJAL-1989 map hidden column ranges tree | commitdiff
2015-12-22 gmungocJAL-653 AlignedCodonFrame collections changed from... tree | commitdiff
2015-12-22 gmungocJAL-653 GFF new/refactored helper classes tree | commitdiff
2015-12-22 gmungocJAL-653 AlignedCodonFrame internal refactor, merge... tree | commitdiff
2015-12-03 gmungocJAL-653 handle reverse strand mappings also tree | commitdiff
2015-11-30 gmungocJAL-653 MapList constructor merges any contiguous ranges tree | commitdiff
2015-11-21 gmungocJAL-653 JAL-1968 FeaturesFile now handles Jalview or... tree | commitdiff
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