JAL-2629 fix expected length error for hmmbuild by uniquifying sequences
[jalview.git] / test / jalview / util /
2017-07-25 TZVanaaltenJAL-2616 add ability to perform random alignments withi...
2017-07-24 tzvanaaltenJAL-2616 add test class and test files for analyser
2017-07-21 TZVanaaltenJAL-2616 add ability to sort Pfam families and HMMs...
2017-07-20 TZVanaaltenJAL-2616 add documentation for probability analyser
2017-05-05 kiramtMerge remote-tracking branch
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges
2017-04-25 kiramtJAL-2388 Working hidden regions hide/show in desktop
2017-04-24 kiramtJAL-2388 Finished split of hidden columns and selected...
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection...
2017-03-24 gmungocJAL-838 move two callers off Comparison.PID and depreca...
2017-02-23 gmungocJAL-2403 JAL-1483 changes to ScoreModelI hierarchy...
2017-02-17 gmungocJAL-2413 extracted new method SetUtils.countDisjunction()
2017-02-08 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-01-27 gmungocJAL-2360 JAL-2371 updates from review CR-JAL-1
2017-01-26 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-10 gmungocJAL-2377 avoid infinite loop formatting 1.0E-310
2017-01-10 kiramtJAL-2316 Separate label/db name in UrlProviders. Unit...
2017-01-06 gmungocJAL-2360 findColour() with no args removed from ColourS...
2016-12-16 gmungocJAL-2360 added UserColourScheme.toAppletParameter+test...
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum,
2016-11-28 gmungocMerge branch 'develop' into trialMerge
2016-11-28 tcofoegbuMerge branch 'features/JAL-2326_JOptionPane-refactoring...
2016-11-25 gmungocMerge branch 'develop' into trialMerge
2016-11-24 tcofoegbuJAL-2326 added setup method for JvOptionPane in all... features/JAL-2326_JOptionPane-refactoring
2016-11-24 Jim ProcterJAL-2325 apply license to new source files
2016-11-22 Jim ProcterMerge branch 'features/JAL-1738_JAL-345_selectionfromhi...
2016-11-08 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2016-11-08 tcofoegbuJAL-2292 renamed method and improved implementation...
2016-11-07 gmungocJAL-2272 another test case
2016-11-07 gmungocJAL-2272 unit tests added for Platform.isControlDown
2016-11-04 tcofoegbuJAL-2292 Unit test for utility method for comparing...
2016-11-03 kiramtJAL-2281 Back out unit test update, as Mungo already...
2016-11-03 kiramtMerge remote-tracking branch 'origin/develop' into...
2016-11-03 gmungocJAL-2281 test added to show searchRefs is now not case...
2016-11-03 kiramtJAL-2281 Minor unit test addition
2016-11-02 kiramtMerge remote-tracking branch 'origin/bug/JAL-2282'...
2016-11-02 kiramtJAL-2281 Unit test updates
2016-11-02 kiramtMerge remote-tracking branch 'origin/bug/JAL-2282'...
2016-11-02 kiramtJAL-2282 Renamed internal use of sequence id / db acces...
2016-11-02 kiramtJAL-2282 URLLink unit tests updated
2016-11-01 gmungocJAL-98 simplified repeat() method
2016-10-31 gmungocJAL-98 round when formatting dec places
2016-10-28 Jim ProcterJAL-966 JAL-1738 JAL-345 interfaces for SearchResults...
2016-10-27 gmungocJAL-2282 test assertions for 'other' dbsource spikes/geoff spikes/jpred
2016-10-27 gmungocJAL-98 refactor bleachColour() to ColorUtils
2016-10-26 gmungocMerge branch 'bug/JAL-98consensusMemory' into develop
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-24 kiramtUnit tests for UrlLink bug/JAL-2281JAL-2282
2016-10-06 gmungocMerge branch 'develop' into bug/JAL-98consensusMemory
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-10-05 Jim ProcterJAL-2189 apply license
2016-10-05 Jim ProcterJAL-2189 format tests
2016-10-03 gmungocJAL-98 use Profile to store consensus, ResidueCount...
2016-10-03 gmungocJAL-98 bespoke fast percentage formatter for consensus...
2016-09-13 gmungocJAL-1803 extracted class ChainId to jalview.util.CaseIn...
2016-09-07 Jim ProcterJAL-2192 TODO
2016-09-06 gmungocJAL-2147 additional test coverage for findMappingsForSe...
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum
2016-07-14 Jim ProcterJAL-2147 findMappingsBetweenSequenceAndOthers for scopi...
2016-07-11 gmungocfile format enum wip changes
2016-06-15 Jim ProcterMerge branch 'develop' into features/JAL-2110_crossRefD...
2016-06-14 gmungocJAL-2114 more helpful reporting of parse failures
2016-06-14 gmungocJAL-1686 JAL-2110 equals and/or hashCode method added
2016-06-09 gmungocJAL-2110 work in progress
2016-06-03 gmungocJAL-2110 random stuff
2016-05-23 gmungocMerge branch 'develop' into features/JAL-2110_makeSense...
2016-05-20 gmungocJAL-2114 explicit invalid test cases added
2016-05-20 gmungocJAL-2114 accept "<123..178" or "123..>178" format
2016-05-20 gmungocJAL-2110 unit tests for and minor refactoring of CrossRef
2016-05-19 gmungocJAL-2114 added single-locus case and more error tests
2016-05-19 gmungocJAL-2114 parser + tests for GenBank location descriptors
2016-05-18 gmungocJAL-2049 use HGVS notation for variant on protein residue
2016-05-13 gmungocJAL-2105 capture Ensembl data version, check REST versi...
2016-04-22 gmungocJAL-2068 code and test for case of minValue == maxValue
2016-04-22 gmungocJAL-2068 convenience helper method for graduated score...
2016-04-14 gmungocJAL-1705 refactored/utility methods to detect e.g....
2016-04-01 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h...
2016-04-01 gmungocJAL-1705 tweak to MapList.toString for debugging
2016-04-01 gmungocJAL-1705 generalised getLength() to handle [start1...
2016-03-28 tcofoegbuJAL-1919 Fixed broken test in DBRefUtilsTest
2016-03-21 gmungocJAL-2029 many-to-many EnsemblCDS-to-Uniprot mappings
2016-03-15 gmungocJAL-1705 code tidy/comment only
2016-03-03 gmungocJAL-1705 include stop codons in derived CDS; support...
2016-03-01 gmungocJAL-1705 align CDS and peptide products to transcripts
2016-02-19 gmungocJAL-1705 lenient DBRef matcher added (accession id...
2016-02-19 gmungocJAL-1705 helper method for mapping excluding stop codon
2016-02-04 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h...
2016-02-04 gmungocJAL-2005 added (stable) sort methods parameterised by
2016-01-28 gmungocMerge branch 'develop' into JAL-1705_trialMerge
2016-01-28 gmungocJAL-1705 merge contiguous ranges when constructing...
2016-01-21 gmungocJAL-1705 isFromForwardStrand added; toString (for debug...
2016-01-21 gmungocJAL-1705 canonicalise ENSEMBL name; code tidy
2016-01-11 gmungocJAL-1989 map hidden column ranges
2015-12-22 gmungocJAL-653 AlignedCodonFrame collections changed from...
2015-12-22 gmungocJAL-653 GFF new/refactored helper classes
2015-12-22 gmungocJAL-653 AlignedCodonFrame internal refactor, merge...
2015-12-03 gmungocJAL-653 handle reverse strand mappings also
2015-11-30 gmungocJAL-653 MapList constructor merges any contiguous ranges
2015-11-21 gmungocJAL-653 JAL-1968 FeaturesFile now handles Jalview or...
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