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Merge branch 'releases/Release_2_11_3_Branch' into develop
[jalview.git]
/
test
/
jalview
/
2023-03-20
James Procter
Merge branch 'develop' into features/JAL-4134_treeviewe...
tree
|
commitdiff
2023-03-20
James Procter
JAL-4150 test and quick patch copying code from AlignFr...
tree
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commitdiff
2023-03-20
James Procter
JAL-2349 test TODOs
tree
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commitdiff
2023-03-20
James Procter
JAL-2349 fix off by one when resolving columns for...
tree
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commitdiff
2023-03-17
James Procter
JAL-4134 store/restore Newick tree for PAE annotation row
tree
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commitdiff
2023-03-16
Ben Soares
JAL-629 fixed a test failing when run without a Jalview...
tree
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commitdiff
2023-03-15
James Procter
JAL-4091 JAL-629 ‘Add Reference Annotations’ takes...
tree
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commitdiff
2023-03-15
James Procter
JAL-4134 JAL-3855 store/restore groups, tree and thresh...
tree
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commitdiff
2023-03-15
Ben Soares
JAL-3833 fixed HiDPI test for macOS
tree
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commitdiff
2023-03-15
Ben Soares
JAL-629 Commands more objecty, less classy. FileLoader...
tree
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commitdiff
2023-03-13
Ben Soares
JAL-629 teardown in CommandsTest
tree
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commitdiff
2023-03-11
Ben Soares
JAL-629 start of CommandsTest. More ArgParserTests.
tree
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commitdiff
2023-03-10
Ben Soares
JAL-629 start of tests and more examples
tree
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commitdiff
2023-03-09
Ben Soares
JAL-629 start of tests
tree
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commitdiff
2023-03-08
James Procter
Merge branch 'features/r2_11_2_alphafold/JAL-629' into...
tree
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commitdiff
2023-03-02
Ben Soares
JAL-629 Some refactoring to allow more flexible use...
tree
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commitdiff
2023-02-28
Ben Soares
JAL-629 Firm up bootstrapArgs. Correct '-colour' in...
tree
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commitdiff
2023-02-27
James Procter
JAL-4134 allow tree groups to be stored/recovered on...
tree
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commitdiff
2023-02-27
Ben Soares
JAL-629 JAL-4124 JAL-3855 remove deleted debugging...
tree
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commitdiff
2023-02-27
James Procter
Merge branch 'develop' into features/JAL-4134_treeviewe...
tree
|
commitdiff
2023-02-24
James Procter
JAL-629 JAL-4124 JAL-3855 test to check we can import...
tree
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commitdiff
2023-02-24
James Procter
Merge branch 'features/r2_11_2_alphafold/JAL-629' into...
features/JAL-3858_PAEsInProjects
tree
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commitdiff
2023-02-24
Ben Soares
JAL-629 better test fixes. --props=... instead of ...
tree
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commitdiff
2023-02-23
Ben Soares
JAL-629 test fixing
tree
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commitdiff
2023-02-23
James Procter
JAL-4134 group columns using a tree cut - seems to...
tree
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commitdiff
2023-02-23
Ben Soares
JAL-629 Add debug messages for more failing tests
tree
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commitdiff
2023-02-23
James Procter
JAL-4134 - brutal hack to build a tree clustering colum...
tree
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commitdiff
2023-02-23
Ben Soares
JAL-629 fixed a Log4j test by adding --debug arg
tree
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commitdiff
2023-02-23
James Procter
JAL-4134 - refactor tree calculation code to work with...
tree
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commitdiff
2023-02-22
James Procter
JAL-3858 persist PAE matrix (only so far) as serialised...
tree
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commitdiff
2023-02-22
James Procter
JAL-1551 source formatting
tree
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commitdiff
2023-02-22
James Procter
JAL-3858 simple test for PAE matrix recovery
tree
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commitdiff
2023-02-22
James Procter
JAL-4027 JAL-3858 rename CUSTOM_RENDERER to CONTACT_MAT...
tree
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commitdiff
2023-02-16
James Procter
JAL-1713 don’t close an automatically created overview...
tree
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commitdiff
2023-02-15
James Procter
Merge branch 'develop' into feature/JAL-1713_overviewIn...
tree
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commitdiff
2023-02-15
James Procter
Passing test for JAL-4127 failing on the JAL-1713 branch
tree
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commitdiff
2023-02-13
James Procter
Merge branch 'develop' into feature/JAL-1713_overviewIn...
tree
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commitdiff
2023-02-10
James Procter
JAL-3077 broken conflict resolve resulted in failing...
tree
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commitdiff
2023-02-10
James Procter
JAL-4126 comment out closeAll - so we can visually...
tree
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commitdiff
2023-02-10
James Procter
JAL-4126 failing test - colour scheme appears to be...
tree
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commitdiff
2023-02-10
James Procter
JAL-840 generate fragments of clustal.html documentatio...
tree
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commitdiff
2023-02-03
James Procter
Merge branch 'develop' into features/r2_11_2_alphafold...
tree
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commitdiff
2023-02-02
James Procter
JAL-4119 JAL-2144 ‘invalid’ DBRefEntry has a null versi...
patch/JAL-4119_sifts_ftp_split
tree
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commitdiff
2023-02-02
James Procter
JAL-4119 use split_xml directories rather than the...
tree
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commitdiff
2023-01-31
James Procter
JAL-1713 update from Jalview 2.11.3 develop
tree
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commitdiff
2023-01-26
Ben Soares
JAL-4118 remove unnecessary sleep from QuitHandlerTest
tree
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commitdiff
2023-01-26
Ben Soares
JAL-1988 Add a sleep to file save test to give time...
tree
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commitdiff
2023-01-25
James Procter
Merge branch 'new_feature/JAL-4019_ambiguous_base_colou...
tree
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commitdiff
2023-01-24
James Procter
Merge branch 'merge/JAL-1988_JAL-3772+JAL-3416+JAL...
tree
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commitdiff
2023-01-24
James Procter
Merge branch 'develop' (JAL-4102 2.11.2.6 patch release...
features/r2_11_2_alphafold/JAL-2349_JAL-3855
tree
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commitdiff
2023-01-20
Jim Procter
Merge branch 'patch/JAL-4114_updated_3dbeacons_api...
tree
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commitdiff
2023-01-20
Jim Procter
Merge branch 'patch/Release_2_11_2_6_Branch' into develop
tree
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commitdiff
2023-01-20
Jim Procter
JAL-2353 primary ref candidates that should be promoted...
patch/Release_2_11_2_6_Branch
tree
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commitdiff
2023-01-20
Jim Procter
JAL-4114 missing mock server response
tree
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commitdiff
2023-01-20
Jim Procter
JAL-4114 updated mock tests and responses for v2.0 api
tree
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commitdiff
2023-01-17
Ben Soares
Merge branch 'develop' into merge/JAL-1988_JAL-3772...
tree
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commitdiff
2022-11-30
Ben Soares
JAL-4101 Updated Rfam* tests
tree
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commitdiff
2022-11-30
Jim Procter
JAL-2353 patch for Ensembl refs from uniprot - needs...
tree
|
commitdiff
2022-11-29
Ben Soares
JAL-4101 Updated Rfam* tests
tree
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commitdiff
2022-11-14
Ben Soares
JAL-4019 Put original test back
tree
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commitdiff
2022-11-13
Ben Soares
JAL-4019 Added tests for new Nucleotide sequence detection
tree
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commitdiff
2022-11-09
Ben Soares
JAL-1988 JAL-3772 Test for FORCE_QUIT whilst saving...
bug/JAL-1988_JAL-3772_improved_quit_handling
tree
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commitdiff
2022-11-08
Ben Soares
JAL-1988 JAL-3772 Tests for various quitting scenarios
tree
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commitdiff
2022-10-30
Jim Procter
JAL-2353 patch for Ensembl refs from uniprot - needs...
tree
|
commitdiff
2022-10-29
Jim Procter
Merge branch 'features/JAL-4061_and_JAL-4062_findselect...
tree
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commitdiff
2022-10-26
Ben Soares
Merge branch 'features/r2_11_2_alphafold/JAL-2349_JAL...
tree
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commitdiff
2022-10-26
Ben Soares
JAL-3416 (and others) increasing number of STDERR lines...
tree
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commitdiff
2022-10-20
Jim Procter
JAL-2349 formatting/pick correct exception
tree
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commitdiff
2022-10-20
Jim Procter
JAL-2349 JAL-3855 ContactListI.getPosition() to recover...
tree
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commitdiff
2022-10-20
Jim Procter
JAL-2349 JAL-3855 experimenting with filtering columns...
tree
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commitdiff
2022-10-17
Jim Procter
JAL-2349 JAL-3855 tests that probably should be part...
tree
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commitdiff
2022-10-17
Jim Procter
JAL-2349 JAL-3855 Integrate pAE retrieval in StructureF...
tree
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commitdiff
2022-10-14
Jim Procter
Merge branch 'features/JAL-3895_alphafoldcolours' into...
tree
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commitdiff
2022-10-11
Jim Procter
JAL-4073 update tests
tree
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commitdiff
2022-10-06
Jim Procter
JAL-1551 formatting
tree
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commitdiff
2022-10-06
Jim Procter
JAL-4073 Pfam retrieval now works via a template includ...
tree
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commitdiff
2022-09-15
Jim Procter
JAL-4061 support incremental search of features
tree
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commitdiff
2022-09-15
Jim Procter
JAL-4061 tests, bugfixes and TODOs for matching feature...
tree
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commitdiff
2022-09-15
Jim Procter
JAL-4062 avc operation and model method for copying...
tree
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commitdiff
2022-09-15
Jim Procter
Merge branch 'develop' into features/JAL-4061_and_JAL...
tree
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commitdiff
2022-09-14
Jim Procter
Merge branch 'bug/JAL-3612_overviewFeatureOrdering...
tree
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commitdiff
2022-09-14
Jim Procter
JAL-4061 JAL-4062 Find can now search features
tree
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commitdiff
2022-06-24
Jim Procter
JAL-2349 TODO for tests
tree
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commitdiff
2022-06-24
Jim Procter
JAL-2349 JAL-3855 formatting
tree
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commitdiff
2022-06-10
Jim Procter
Merge branch 'features/r2_11_2_alphafold/JAL-2349_JAL...
tree
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commitdiff
2022-06-09
Jim Procter
Merge branch 'bug/JAL-4020_add_pymolwin_paths' into...
tree
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commitdiff
2022-06-09
Jim Procter
JAL-4026 increase timeouts for command line ops
tree
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commitdiff
2022-06-09
Jim Procter
JAL-4026 always wait 50ms before checking if the calcul...
tree
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commitdiff
2022-06-06
Ben Soares
JAL-4020 updated tests
tree
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commitdiff
2022-04-16
Jim Procter
JAL-3365 expand range of allowed DSSP secondary structu...
tree
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commitdiff
2022-04-05
Jim Procter
JAL-3981 patch tests and remove errant imports
tree
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commitdiff
2022-04-05
Jim Procter
JAL-3990 gradle spotlessApply
tree
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commitdiff
2022-03-31
Jim Procter
JAL-3085 update tests and mock responses, new P0dtd1...
tree
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commitdiff
2022-03-30
Jim Procter
JAL-3976 fix mock PDBFTS query & responses
patch/JAL-3976_3dbeaconsnull
tree
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commitdiff
2022-03-23
Jim Procter
JAL-3976 update tests
tree
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commitdiff
2022-03-08
Jim Procter
JAL-3746 apply copyright to tests
spike/try_spotless_JAL-3438
tree
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commitdiff
2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
tree
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commitdiff
2022-03-08
Jim Procter
JAL-3108 updated Ensembl client and model species names
tree
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commitdiff
2022-02-17
Jim Procter
JAL-3551 patch superpose test for additional undo dis...
tree
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commitdiff
2022-02-16
Jim Procter
Merge branch 'develop' into features/r2_11_2_alphafold...
tree
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commitdiff
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