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JAL-345 JAL-1738 menu item, AlignFrame action listener and documentation for Select...
[jalview.git]
/
test
/
2016-08-26
Jim Procter
JAL-2154 Defer failing cross-ref combinations that...
tree
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commitdiff
2016-08-26
Jim Procter
JAL-2154 check that CDS panel is only nucleotide, and...
tree
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commitdiff
2016-08-25
Jim Procter
JAL-2106 JAL-2154 fix test for additional reference...
tree
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commitdiff
2016-08-25
Jim Procter
JAL-2106 JAL-2154 cross-refs from Ensembl should verify...
tree
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commitdiff
2016-08-25
Jim Procter
JAL-2106 tighten DBRefEntry primary seq test for PDB
tree
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commitdiff
2016-08-25
Jim Procter
Merge branch 'trailm' into trial_fixMakeCDSDBRefPropagation
tree
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commitdiff
2016-08-25
Jim Procter
Merge branch 'refactor/JAL-2106_sourceDbRef_revision...
tree
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commitdiff
2016-08-25
Jim Procter
Merge branch 'develop' into refactor/JAL-2106_sourceDbR...
tree
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commitdiff
2016-08-24
Jim Procter
JAL-2106 FIXME for test failure
tree
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commitdiff
2016-08-24
Jim Procter
JAL-2106 TODO - verify Embl primary refs get added
tree
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commitdiff
2016-08-24
Jim Procter
JAL-2106 removed setSourceDBRef, refactor getSourceDBRe...
tree
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commitdiff
2016-08-24
Jim Procter
JAL-2106 stricter check for 1:1 mapping (same numbering...
tree
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commitdiff
2016-08-24
Jim Procter
JAL-2106 rejig test to minimally verify patch that...
tree
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commitdiff
2016-08-24
Jim Procter
JAL-2106 DBRefEntry.isPrimary() minimal test & implemen...
tree
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commitdiff
2016-08-23
Jim Procter
JAL-2154 updated testMakeCDSAlignment for expected...
tree
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commitdiff
2016-08-23
Jim Procter
Merge branch 'develop' into bug/JAL-2154projectMappings
tree
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commitdiff
2016-08-23
gmungoc
JAL-2174 markColumns() refactored inside ColumnSelection
tree
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commitdiff
2016-08-22
Jim Procter
JAL-2154 - rejig test pass code for breadth-first ...
tree
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commitdiff
2016-08-22
gmungoc
JAL-2175 code tidying
tree
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commitdiff
2016-08-22
gmungoc
JAL-2175 code/test fixes/tidy for PFAM/MSF/JSON roundtrip
tree
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commitdiff
2016-08-22
Jim Procter
JAL-2154 always check dataset sequence for sequence...
tree
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commitdiff
2016-08-22
Jim Procter
JAL-2154 patch verifyAlignment so it fails for duplicat...
tree
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commitdiff
2016-08-22
Jim Procter
JAL-2154 tidy assert messages and fix test to verify...
tree
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commitdiff
2016-08-22
Jim Procter
JAL-2154 test that verifyAlignment fails for duplicate...
tree
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commitdiff
2016-08-22
gmungoc
JAL-2011 adjust method to fix failing unit test
tree
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commitdiff
2016-08-19
gmungoc
JAL-2174 bug fixes + refactoring to allow + unit tests
tree
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commitdiff
2016-08-19
Jim Procter
JAL-2154 major rejigging of test looping again
tree
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commitdiff
2016-08-19
Jim Procter
JAL-2154 disable DAS sources for Jalview2XML tests
tree
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commitdiff
2016-08-19
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-08-19
tcofoegbu
JAL-1803 unit test for PDB chainCode save/restore from...
tree
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commitdiff
2016-08-19
Jim Procter
JAL-2154 fix looping structure so for a particular...
tree
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commitdiff
2016-08-19
Jim Procter
JAL-2154 drop unused hashes
tree
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commitdiff
2016-08-19
Jim Procter
JAL-2154 testNG like assertAlignmentDatasetRefs static...
tree
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commitdiff
2016-08-19
Jim Procter
JAL-2154 use right reference string for recovering...
tree
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commitdiff
2016-08-18
gmungoc
Merge branch 'develop' into bug/JAL-1841rnaSecStr
tree
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commitdiff
2016-08-18
gmungoc
JAL-2001 return copy of selection in getSelected()
tree
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commitdiff
2016-08-17
gmungoc
JAL-2172 reverted to not sorting column selection
tree
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commitdiff
2016-08-17
gmungoc
JAL-2172 handle case where column selection is not...
tree
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commitdiff
2016-08-16
Jim Procter
JAL-2154 verify sequenceI/dataset refs for codonmappings
tree
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commitdiff
2016-08-16
Jim Procter
JAL-2154 check alignment isn’t null before validating
tree
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commitdiff
2016-08-16
Jim Procter
JAL-2154 [test] verify reference integrity for alignmen...
tree
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commitdiff
2016-08-16
gmungoc
Merge branch 'develop' into bug/JAL-1841rnaSecStr
tree
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commitdiff
2016-08-16
gmungoc
JAL-2172 unit test added
tree
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commitdiff
2016-08-16
gmungoc
JAL-2171 matching bracket default character for rna...
tree
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commitdiff
2016-08-16
Jim Procter
JAL-2154 formatting
tree
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commitdiff
2016-08-16
Jim Procter
JAL-2154 new assert to check reference integrity for...
tree
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commitdiff
2016-08-16
Jim Procter
JAL-2154 xref test harness - test fails if there are...
tree
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commitdiff
2016-08-16
gmungoc
Merge branch 'develop' into bug/JAL-1841rnaSecStr
tree
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commitdiff
2016-08-15
tcofoegbu
JAL-1919 Added improvement to ensure consistence of...
tree
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commitdiff
2016-08-13
Jim Procter
JAL-2154 refactor CrossRef UI code to its own class
tree
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commitdiff
2016-08-13
Jim Procter
JAL-2154 check if the desktop is constructed before...
tree
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commitdiff
2016-08-12
gmungoc
JAL-1841, bug fix in rna SS consensus, additions to...
tree
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commitdiff
2016-08-11
Jim Procter
JAL-2154 clear the desktop before every 2xml test
tree
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commitdiff
2016-08-11
Jim Procter
JAL-2154 refactor setup/teardown from Jalview2xml for...
tree
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commitdiff
2016-08-05
gmungoc
JAL-1448 always use UK locale for formatted date properties
tree
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commitdiff
2016-08-04
Jim Procter
JAL-2154 make sure all sequences referenced via DBRefEn...
tree
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commitdiff
2016-08-04
Jim Procter
JAL-2110 comment on failing test (consider skipping...
tree
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commitdiff
2016-08-04
gmungoc
JAL-2164 changed to be Java 1.7 compliant
tree
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commitdiff
2016-08-01
Jim Procter
JAL-2164 TODO: make test pass for JMOL_PARSER
tree
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commitdiff
2016-08-01
Jim Procter
JAL-2164 JAL-1919 JAL-1270 use structure import setting...
tree
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commitdiff
2016-08-01
Jim Procter
JAL-2164 prevent jalview news from opening
task/JAL-2164_mcviewforoldjalviewprojects
tree
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commitdiff
2016-08-01
Jim Procter
JAL-2164 clear the desktop before testStoreAndRecoverEx...
tree
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commitdiff
2016-08-01
Jim Procter
JAL-1772 make sure we actually return reference to...
tree
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commitdiff
2016-07-29
Jim Procter
JAL-1772 JAL-2164 make expanded view save/restore test...
tree
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commitdiff
2016-07-29
Jim Procter
JAL-2164 revert tests depending on import of legacy...
tree
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commitdiff
2016-07-29
tcofoegbu
JAL-2157 fixed Jalview2xmlTest
tree
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commitdiff
2016-07-27
tcofoegbu
JAL-1919 added codes for End-2-End scan for sequence...
tree
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commitdiff
2016-07-21
tcofoegbu
Resolve merge conflict for StructureImportSettings
tree
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commitdiff
2016-07-21
tcofoegbu
JAL-2148 fix to heuristically determine chain terminati...
tree
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commitdiff
2016-07-21
Jim Procter
Merge branch 'apifix/JAL-1926_JAL-2106' into develop
tree
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commitdiff
2016-07-20
Jim Procter
JAL-1926 JAL-2106 remove startRes/endRes fields - not...
tree
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commitdiff
2016-07-19
gmungoc
JAL-391 corrected handling of gapped sequences
tree
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commitdiff
2016-07-19
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-07-19
tcofoegbu
JAL-1919 set default structure file format to mmCIF...
tree
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commitdiff
2016-07-18
Jim Procter
JAL-2110 JAL-2145 fix out of date test for 2baee069f9ed...
tree
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commitdiff
2016-07-18
Jim Procter
Merge branch 'features/JAL-2068groovyAnnotationWorker...
tree
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commitdiff
2016-07-14
Jim Procter
JAL-2147 findMappingsBetweenSequenceAndOthers for scopi...
tree
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commitdiff
2016-07-12
Jim Procter
JAL-2110 note about use case for when alignAsSameSequen...
tree
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commitdiff
2016-07-12
Jim Procter
JAL-2110 test demonstrating limitation of current imple...
tree
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commitdiff
2016-07-09
gmungoc
Merge branch 'develop' into features/JAL-2110_crossRefD...
features/JAL-2110_crossRefDuplications
tree
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commitdiff
2016-07-08
tcofoegbu
JAL-1919 Fixed failing tests, enabled HETATM processing...
tree
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commitdiff
2016-07-07
gmungoc
JAL-2110 added alignAsSameSequences to handle 'direct...
tree
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commitdiff
2016-07-06
gmungoc
JAL-2110 AlignmentUtils.alignCdsAsProtein implemented
tree
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commitdiff
2016-07-06
gmungoc
JAL-2110 ensuring mapped dbrefs between protein and cds
tree
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commitdiff
2016-07-06
gmungoc
JAL-2110 add 'mapFromId' to Mapping (for e.g. EMBL...
tree
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commitdiff
2016-07-06
gmungoc
JAL-2110 fixes and tests for adding dbrefs to EMBL...
tree
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commitdiff
2016-07-04
gmungoc
JAL-2110 added another test case (should fail but doesn't)
tree
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commitdiff
2016-07-04
gmungoc
Revert "JAL-2110 use shared alignment dataset when...
tree
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commitdiff
2016-07-04
gmungoc
JAL-2110 use shared alignment dataset when copying...
tree
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commitdiff
2016-07-04
gmungoc
JAL-2110 bug fix / test for searchDataset mappings...
tree
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commitdiff
2016-07-01
gmungoc
JAL-2110 add 'products' parameter to filter results...
tree
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commitdiff
2016-06-30
gmungoc
Merge branch 'develop' into features/JAL-2110_crossRefD...
tree
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commitdiff
2016-06-30
gmungoc
JAL-2110 fixes and tests for synthesized EMBLCDSPROTEIN...
tree
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commitdiff
2016-06-30
gmungoc
Merge branch 'develop' into features/JAL-2110_crossRefD...
tree
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commitdiff
2016-06-30
tcofoegbu
JAL-1919 updated PDBSequenceFetcherTest and JMol parser...
tree
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commitdiff
2016-06-29
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-06-29
tcofoegbu
JAL-1479 added test case to elaborate getEntityByMostOp...
tree
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commitdiff
2016-06-29
gmungoc
Merge branch 'develop' into features/JAL-2110_crossRefD...
tree
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commitdiff
2016-06-29
gmungoc
JAL-1270 avoid overwriting .jalview_properties with...
tree
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commitdiff
2016-06-29
gmungoc
Merge branch 'develop' into features/JAL-2110_crossRefD...
tree
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commitdiff
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