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JAL-1565 loading a concise file causes insertions to be automatically hidden in desktop
2014-12-02
Jim Procter
JAL-1602 add missing jars to install
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2014-12-01
Jim Procter
Merge branch 'JAL-1602_282_release' into Release_2_8_2_Branch
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2014-12-01
Jim Procter
JAL-1602 upgrade to InstallAnywhere 2014 J17 runtimes
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2014-12-01
Jim Procter
JAL-1199 JAL-1569 incremental patch allow non-standard...
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2014-12-01
Jim Procter
JAL-1517 updating author list
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2014-12-01
Jim Procter
JAL-1517 updating authors list
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2014-12-01
Jim Procter
JAL-795 hack to ignore black colour in annotation element.
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2014-12-01
Jim Procter
JAL-1601 ignore the JABA Jpred client in Jalview 2...
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2014-12-01
Jim Procter
Merge branch 'bug/JAL-1610refAnnotationsInViews' into...
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2014-12-01
Jim Procter
Merge branch 'bug/JAL-1610refAnnotationsInViews' into...
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2014-12-01
Jim Procter
file for JAL-1268 jalview.io.Jalview2xmlTests.testTCoffeeScores
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2014-11-28
Jim Procter
Merge branch 'JAL-1517_release282' into develop
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2014-11-28
Jim Procter
Merge branch 'JAL-1517_release282' into Release_2_8_2_Branch
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2014-11-28
Jim Procter
JAL-1517 first stab at release notes... lots of documentatio...
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2014-11-28
Jim Procter
JAL-1522 output installation type to stdout
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2014-11-28
Jim Procter
JAL-1522 remove build/deployment details imported from...
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2014-11-28
Jim Procter
JAL-1517 formatting
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2014-11-28
Jim Procter
JAL-1611 revise log level to reduce verbosity
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2014-11-28
Jim Procter
JAL-1583 javadoc and fix constructor signature
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2014-11-28
Jim Procter
JAL-1342 document argument to specify preferred JABA...
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2014-11-28
Jim Procter
JAL-1604 formatting
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2014-11-28
Jim Procter
JAL-1604 revised wording and internationalised dialog
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2014-11-28
Jim Procter
JAL-1583 back out original fix and simply check MSAWSThread...
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2014-11-28
Jim Procter
JAL-1583 formatting
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2014-11-28
Jim Procter
JAL-1583 new validInput flag set according to validity...
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2014-11-28
Jim Procter
JAL-1583 refactored addInternalFrame to allow webservice...
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2014-11-28
Jim Procter
JAL-1517 formatting/tidy
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2014-11-27
Jim Procter
JAL-1517 svg==scalable :)
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2014-11-27
Jim Procter
Merge branch 'patchJAL-674_offset' into Release_2_8_2_Branch
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2014-11-27
Jim Procter
Merge branch 'patchJAL-674_offset' into develop
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2014-11-27
Jim Procter
JAL-674 add sequence associated annotation rows to...
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2014-11-27
Jim Procter
JAL-1177 JAL-905 cannot recover sequences from dataset...
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2014-11-27
Jim Procter
JAL-674 avoid writing \0 for chain code
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2014-11-27
Jim Procter
Merge branch 'patchJAL-674_offset' into develop
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2014-11-27
Jim Procter
Merge branch 'patchJAL-674_offset' into Release_2_8_2_Branch
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2014-11-27
Jim Procter
JAL-674 patch to fix bug with showing reference annotation...
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2014-11-27
Jim Procter
JAL-674 formatting
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2014-11-27
Jim Procter
JAL-674 unused variable
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2014-11-27
Jim Procter
JAL-674 bug in test
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2014-11-27
Jim Procter
JAL-674 test that PDB annotation created when importing...
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2014-11-27
Jim Procter
JAL-674 patch NPE bug when test run in isolation
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2014-11-27
Jim Procter
JAL-674 fix test properties path and add properties...
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2014-11-27
Jim Procter
JAL-674 JAL-966 new method to retrieve all views
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2014-11-27
Jim Procter
organise imports
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2014-11-27
Jim Procter
JAL-966 promote getName to an api method
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2014-11-26
Jim Procter
Merge branch 'JAL-674_fixannotlabels' into develop
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2014-11-26
Jim Procter
Merge branch 'JAL-674_fixannotlabels' into Release_2_8_2_Branch
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2014-11-26
Jim Procter
JAL-674 make RNAML-extracted secondary structure lines...
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2014-11-26
Jim Procter
JAL-1578 fix logic for showing score when no description...
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2014-11-26
Jim Procter
JAL-674 JAL-1578 commented code for displaying annotation...
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2014-11-26
Jim Procter
JAL-674 friendly name for PDB file included in secondary...
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2014-11-26
Jim Procter
JAL-674 employ the provided DNA/Protein matrix string...
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2014-11-26
Jim Procter
JAL-674 disable addition of PDBRESNUM annotation line
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2014-11-26
Jim Procter
JAL-674 nicer temperature factor labelling and include...
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2014-11-25
Jim Procter
Merge branch 'bug/JAL-689' into develop
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2014-11-25
Jim Procter
Merge branch 'bug/JAL-689' into Release_2_8_2_Branch
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2014-11-25
Jim Procter
fix for JAL-689 ensure fastpainting flag set only when...
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2014-11-25
Jim Procter
formatting
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2014-11-25
Jim Procter
patch for JAL-1599 - annotation row constructed by...
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2014-11-25
Jim Procter
Merge branch 'patch_JAL-689' into Release_2_8_2_Branch
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2014-11-25
Jim Procter
back out duplicate jfree classpath entry
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2014-11-24
Jim Procter
Merge branch 'JAL-1569_wuss_vienna_broke' into develop
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2014-11-24
Jim Procter
Merge branch 'JAL-1569_wuss_vienna_broke' into Release_2_8_2...
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2014-11-24
Jim Procter
JAL-1593 refactor rna helix colours to static singleton...
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2014-11-24
Jim Procter
JAL-1264 update annotation panel dimensions before...
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2014-11-24
Jim Procter
JAL-1595 update annotation sort on opening of the ...
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2014-11-24
Jim Procter
JAL-1595 annotation score is total number of rna helices
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2014-11-23
Jim Procter
JAL-1569 interactive editing of secondary structure...
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2014-11-23
Jim Procter
Merge branch 'JAL-1569_wuss_vienna_broke' into develop
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2014-11-23
Jim Procter
Merge branch 'JAL-1569_wuss_vienna_broke' into Release_2_8_2...
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2014-11-23
Jim Procter
employ test and secondary structure character for determinin...
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2014-11-23
Jim Procter
JAL-1569 formatting
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2014-11-23
Jim Procter
JAL-1593 allow per-sequence shading of RNA helix (stored...
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2014-11-23
Jim Procter
JAL-1569 test for open/close RNA parenthesis character
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2014-11-23
Jim Procter
JAL-1569 formatting
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2014-11-23
Jim Procter
JAL-1569 refactoring of stockholm test
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2014-11-23
Jim Procter
JAL-1569 consistent handling of sequence and alignment...
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2014-11-23
Jim Procter
JAL-1569 revise tests to count number and type of annotation...
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2014-11-23
Jim Procter
JAL-1569 formatting
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2014-11-23
Jim Procter
JAL-1569 preserve input ordering for stockholm files...
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2014-11-23
Jim Procter
JAL-1569 remove stdout on parsing RNA
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2014-11-23
Jim Procter
JAL-1152 avoid NPE on null alignment annotation vector
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2014-11-21
Jim Procter
JAL-674 add RNA sequence associated annotation to alignment...
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2014-11-21
Jim Procter
JAL-1569 formatting
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2014-11-21
Jim Procter
JAL-1140 sensible name for seuqences in RNAML files...
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2014-11-21
Jim Procter
JAL-1489 change initial value to distinguish non-rna...
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2014-11-21
Jim Procter
JAL-1592 JAL-1489 avoid invalid RNA structure and distinguis...
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2014-11-20
Jim Procter
JAL-1569 rna pair code in secondary structure character...
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2014-11-20
Jim Procter
JAL-674 JAL-1569 mark RNA helix number in the value...
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2014-11-20
Jim Procter
JAL-1569 remove log output during RNA secondary structure...
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2014-11-18
Jim Procter
Merge branch 'JAL-1587_promotedisorder' into develop
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2014-11-18
Jim Procter
Merge branch 'JAL-1587_promotedisorder' into Release_2_8_2_B...
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2014-11-18
Jim Procter
JAL-674 make temperature factor, local secondary structure...
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2014-11-18
Jim Procter
JAL-674 JAL-1512 JAL-1333 documentation
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2014-11-17
Jim Procter
JAL-1517 JAL-1587 JAL-674 secondary structure and annotation...
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2014-11-17
Jim Procter
JAL-1517 release notes for 2.8.2
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2014-11-17
Jim Procter
JAL-1587 distinct calc IDs for JPredMSA and Jpred single...
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2014-11-17
Jim Procter
JAL-1587 propagate results of JABA sequence based predictors...
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2014-11-17
Jim Procter
imports and formatting
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2014-11-17
Jim Procter
JAL-1587 propagate JPred annotation from legacy jpred...
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