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2014-07-03	Jim Procter	fixes JAL-1530	commit \| commitdiff \| tree
2014-07-02	Jim Procter	revalidate appears to have gone away ?? (java 1.7 upgrade...	commit \| commitdiff \| tree
2014-07-02	Jim Procter	formatting	commit \| commitdiff \| tree
2014-07-02	Jim Procter	JAL-1333 JAL-1527 refactors to create core structure...	commit \| commitdiff \| tree
2014-07-02	Jim Procter	JAL-1333 test suite for key functionality of java interface...	commit \| commitdiff \| tree
2014-07-02	Jim Procter	JAL-1333 Chimera specific code extracted from the...	commit \| commitdiff \| tree
2014-07-01	Jim Procter	Merge branch 'feature/JAL-1333' into features/JAL-1333	commit \| commitdiff \| tree
2014-06-23	Jim Procter	Merge branch 'JAL-1526' into Release_2_8_2_Branch	commit \| commitdiff \| tree
2014-06-23	Jim Procter	JAL-1526 simple function to write a snapshot of the...	commit \| commitdiff \| tree
2014-06-12	Jim Procter	Merge branch 'hotfix/JAL-1524' into Release_2_8_2_Branch	commit \| commitdiff \| tree
2014-06-12	Jim Procter	Merge branch 'hotfix/JAL-1524' into Release_2_8_1_Branch	commit \| commitdiff \| tree
2014-06-12	Jim Procter	JAL-1524 fix	commit \| commitdiff \| tree
2014-06-10	Jim Procter	Merge branch 'feature/JAL-1379' into Release_2_8_2_Branch	commit \| commitdiff \| tree
2014-06-10	Jim Procter	JAL-1379 a JPred v3.0.1 client via JABA 2.1	commit \| commitdiff \| tree
2014-06-10	Jim Procter	JAL-1379 allow services with an MSA interface to create...	commit \| commitdiff \| tree
2014-06-10	Jim Procter	tidy source	commit \| commitdiff \| tree
2014-06-10	Jim Procter	JAL-1379 allow JABA2 tests to run on local or default...	commit \| commitdiff \| tree
2014-06-10	Jim Procter	JAL-1379 refactor Jws2 service client so dynamic services...	commit \| commitdiff \| tree
2014-06-06	Jim Procter	JAL-1520 fix unicode translation errors.	commit \| commitdiff \| tree
2014-06-06	Jim Procter	JAL-1520 fix unicode translation errors.	commit \| commitdiff \| tree
2014-06-06	Jim Procter	JAL-1519 make the splash screen larger/more readable	commit \| commitdiff \| tree
2014-06-06	Jim Procter	JAL-1519 - tidy build properties management code	commit \| commitdiff \| tree
2014-06-06	Jim Procter	JAL-1519 fix author update issue (doh)	commit \| commitdiff \| tree
2014-06-06	Jim Procter	JAL-1140 Add Anne Menard to author list	commit \| commitdiff \| tree
2014-06-06	Jim Procter	JAL-1517 copyright and formatting	commit \| commitdiff \| tree
2014-06-06	Jim Procter	JAL-1518 drop Jalopy from utils directory	commit \| commitdiff \| tree
2014-06-06	Jim Procter	JAL-1517 copyright and formatting	commit \| commitdiff \| tree
2014-06-06	Jim Procter	JAL-1517 source formatting	commit \| commitdiff \| tree
2014-06-06	Jim Procter	JAL-1518 drop Jalopy from utils directory	commit \| commitdiff \| tree
2014-06-06	Jim Procter	JAL-1517 fix copyright for 2.8.2	commit \| commitdiff \| tree
2014-06-05	Jim Procter	JAL-1517 update copyright to version 2.8.2	commit \| commitdiff \| tree
2014-06-05	Jim Procter	Merge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch	commit \| commitdiff \| tree
2014-06-04	Jim Procter	Merge branch 'docs/2_8_1_Release' into Release_2_8_1_Branch	commit \| commitdiff \| tree
2014-06-04	Jim Procter	JAL-1503 typo	commit \| commitdiff \| tree
2014-06-04	Jim Procter	Merge branch 'develop' into Release_2_8_2_Branch	commit \| commitdiff \| tree
2014-06-04	Jim Procter	Merge branch 'docs/2_8_1_Release' into Release_2_8_1_Branch	commit \| commitdiff \| tree
2014-06-04	Jim Procter	JAL-1503 update author list for 2.8.1	commit \| commitdiff \| tree
2014-06-04	Jim Procter	Merge branch 'docs/2_8_1_Release' into Release_2_8_1_Branch	commit \| commitdiff \| tree
2014-06-04	Jim Procter	JAL-690 JAL-1503 make file associations optional for...	commit \| commitdiff \| tree
2014-06-04	Jim Procter	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2014-06-04	Jim Procter	JAL-952 fixed unresolved conflict breaking build	commit \| commitdiff \| tree
2014-06-04	Jim Procter	Jalview 2.8.2 release branch	commit \| commitdiff \| tree
2014-06-04	Jim Procter	JAL-952 fixed unresolved conflict breaking build	commit \| commitdiff \| tree
2014-06-04	Jim Procter	Merge branch 'docs/2_8_1_Release' into Release_2_8_1_Branch	commit \| commitdiff \| tree
2014-06-04	Jim Procter	JAL-1503 tweak whatsNew document	commit \| commitdiff \| tree
2014-06-04	Jim Procter	Merge branch 'docs/2_8_1_Release' into Release_2_8_1_Branch	commit \| commitdiff \| tree
2014-06-04	Jim Procter	JAL-1503 JAL-690 document .jvp in release notes	commit \| commitdiff \| tree
2014-06-04	Jim Procter	Merge branch 'docs/2_8_1_Release' into Release_2_8_1_Branch	commit \| commitdiff \| tree
2014-06-04	Jim Procter	JAL-1514 - add jalview.org and dundee to explore if...	commit \| commitdiff \| tree
2014-06-04	Jim Procter	Merge branch 'docs/2_8_1_Release' into Release_2_8_1_Branch	commit \| commitdiff \| tree
2014-06-04	Jim Procter	JAL-1503 tidying docs	commit \| commitdiff \| tree
2014-06-04	Jim Procter	JAL-1355 key typo	commit \| commitdiff \| tree
2014-06-03	Jim Procter	Merge branch 'docs/2_8_1_Release' into Release_2_8_1_Branch	commit \| commitdiff \| tree
2014-06-03	Jim Procter	JAL-1503 documentation and release notes	commit \| commitdiff \| tree
2014-06-03	Jim Procter	JAL-690 jvp rather than jar for save/restore state...	commit \| commitdiff \| tree
2014-06-03	Jim Procter	JAL-690 JAL-1503 update file types/extensions in Jalview...	commit \| commitdiff \| tree
2014-06-03	Jim Procter	Merge branch 'docs/2_8_1_Release' into Release_2_8_1_Branch	commit \| commitdiff \| tree
2014-06-03	Jim Procter	JAL-1503 update version/branch version for this branch	commit \| commitdiff \| tree
2014-06-03	Jim Procter	regress fix on JAL-690 - insert association elements...	commit \| commitdiff \| tree
2014-06-03	Jim Procter	Merge branch 'docs/2_8_1_Release' into Release_2_8_1_Branch	commit \| commitdiff \| tree
2014-06-03	Jim Procter	JAL-1503 whats new and release history for 2.8.1 (still...	commit \| commitdiff \| tree
2014-06-03	Jim Procter	JAL-1503 JAL-1350 rework documentation for 2.8.1	commit \| commitdiff \| tree
2014-06-03	Jim Procter	JAL-1164 note that feature introduced in 2.8.0b1	commit \| commitdiff \| tree
2014-06-03	Jim Procter	JAL-1503 JAL-1355 documentation	commit \| commitdiff \| tree
2014-06-03	Jim Procter	JAL-1473 exclude score models not compatible with PCA...	commit \| commitdiff \| tree
2014-06-03	Jim Procter	JAL-1503 gui changes (score models, flanking regions...	commit \| commitdiff \| tree
2014-06-03	Jim Procter	JAL-1503 formatting	commit \| commitdiff \| tree
2014-06-03	Jim Procter	JAL-1503 additional tree score functions	commit \| commitdiff \| tree
2014-06-03	Jim Procter	JAL-1503 PAM250 documentation	commit \| commitdiff \| tree
2014-06-03	Jim Procter	JAL-1503 document updated PCA interface	commit \| commitdiff \| tree
2014-06-03	Jim Procter	JAL-690 add .jvp as default jalview project filetype	commit \| commitdiff \| tree
2014-06-03	Jim Procter	JAL-1503 formatting	commit \| commitdiff \| tree
2014-06-03	Jim Procter	JAL-1503 formatting build file	commit \| commitdiff \| tree
2014-06-03	Jim Procter	JAL-1512 comment out for 2.8.1 release	commit \| commitdiff \| tree
2014-06-03	Jim Procter	JAL-1512 fix calculation once again and include score...	commit \| commitdiff \| tree
2014-06-03	Jim Procter	JAL-1473 make it easier to generate HTML documentation...	commit \| commitdiff \| tree
2014-06-02	Jim Procter	JAL-1512 rejig buggy conservation-basesd score matrix...	commit \| commitdiff \| tree
2014-05-28	Jim Procter	Merge branch 'docs/2_8_1_release' into Release_2_8_1_Branch	commit \| commitdiff \| tree
2014-05-28	Jim Procter	JAL-1509 use local deployJava	commit \| commitdiff \| tree
2014-05-28	Jim Procter	fix for JAL-1510 - workaround for IE9	commit \| commitdiff \| tree
2014-05-28	Jim Procter	Merge branch 'docs/2_8_1_Release' into Release_2_8_1_Branch	commit \| commitdiff \| tree
2014-05-28	Jim Procter	JAL-1507 bugfix	commit \| commitdiff \| tree
2014-05-27	Jim Procter	Merge branch 'docs/2_8_1_Release' into Release_2_8_1_Branch	commit \| commitdiff \| tree
2014-05-27	Jim Procter	JAL-1509 update deployJava.js from http://www.java...	commit \| commitdiff \| tree
2014-05-27	Jim Procter	JAL-1507 added loop to throw dummy javascript calls...	commit \| commitdiff \| tree
2014-05-27	Jim Procter	JAL-1402 conditional logic to ensure annotation & label...	commit \| commitdiff \| tree
2014-05-27	Jim Procter	JAL-1508 make default font size 11pt for embedded menus...	commit \| commitdiff \| tree
2014-05-23	Jim Procter	JAL-1445 updated documentation and added link in whatsNew	commit \| commitdiff \| tree
2014-05-23	Jim Procter	JAL-1445 extend functionality to select or toggle selection...	commit \| commitdiff \| tree
2014-05-22	Jim Procter	remove non-utf8 characters in help pages	commit \| commitdiff \| tree
2014-05-22	Jim Procter	JAL-1503 update version in GPL header	commit \| commitdiff \| tree
2014-05-22	Jim Procter	JAL-1355 JAL-1503 update i18n note	commit \| commitdiff \| tree
2014-05-22	Jim Procter	JAL-1503 new entry for 2.8.1 release history	commit \| commitdiff \| tree
2014-05-22	Jim Procter	JAL-1503 JAL-1355 note about internationalisation in...	commit \| commitdiff \| tree
2014-05-17	Jim Procter	JAL-1477 documentation and tooltips	commit \| commitdiff \| tree
2014-05-13	Jim Procter	Merge branch 'bugfix/JAL-1239' into Release_2_8_1_Branch_i18n	commit \| commitdiff \| tree
2014-05-13	Jim Procter	Merge branch 'bugfix/JAL-1239' into develop	commit \| commitdiff \| tree
2014-05-13	Jim Procter	Merge branch 'bugfix/JAL-1239' into Release_2_8_1_Branch	commit \| commitdiff \| tree
2014-05-13	Jim Procter	JAL-1239 cancelled flag should be checked and counted	commit \| commitdiff \| tree
2014-05-13	Jim Procter	JAL-1239 make doubly sure sub job status is set to...	commit \| commitdiff \| tree
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