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JAL-1619 refactored cDNA translation; modified codon comparison; tests
2014-12-03 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_Branch
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2014-12-03 Jim ProcterJAL-1517 update applet authors list
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2014-12-03 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_Branch
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2014-12-03 Jim ProcterJAL-1517 disable desktop 'take snapshot' menu item...
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2014-12-03 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_Branch
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2014-12-03 Jim ProcterJAL-1517 dropped jnlp file in help documentation in...
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2014-12-03 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_Branch
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2014-12-03 Jim ProcterJAL-1517 updated library licensing info
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2014-12-03 Jim ProcterJAL-1517 release notes
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2014-12-02 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_Branch
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2014-12-02 Jim ProcterJAL-1517 typo
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2014-12-02 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_Branch
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2014-12-02 Jim ProcterJAL-1517 TOC items must be on one line for help2Website
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2014-12-02 Jim ProcterMerge branch 'JAL-1602_282_release' into Release_2_8_2_Branch
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2014-12-02 Jim ProcterJAL-1602 tweak VM inclusion options
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2014-12-02 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_Branch
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2014-12-02 Jim ProcterJAL-1517 documentation for 2.8.2 release
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2014-12-02 Jim ProcterMerge branch 'JAL-1602_282_release' into Release_2_8_2_Branch
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2014-12-02 Jim ProcterJAL-1602 typo in jsonsimple jar
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2014-12-02 Jim ProcterMerge branch 'JAL-1602_282_release' into Release_2_8_2_Branch
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2014-12-02 Jim ProcterJAL-1602 add missing jars to install
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2014-12-01 Jim ProcterMerge branch 'JAL-1602_282_release' into Release_2_8_2_Branch
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2014-12-01 Jim ProcterJAL-1602 upgrade to InstallAnywhere 2014 J17 runtimes
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2014-12-01 Jim ProcterJAL-1199 JAL-1569 incremental patch allow non-standard...
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2014-12-01 Jim ProcterJAL-1517 updating author list
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2014-12-01 Jim ProcterJAL-1517 updating authors list
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2014-12-01 Jim ProcterJAL-795 hack to ignore black colour in annotation element.
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2014-12-01 Jim ProcterJAL-1601 ignore the JABA Jpred client in Jalview 2...
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2014-12-01 Jim ProcterMerge branch 'bug/JAL-1610refAnnotationsInViews' into...
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2014-12-01 Jim Procterfile for JAL-1268 jalview.io.Jalview2xmlTests.testTCoffeeScores
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2014-11-28 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_Branch
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2014-11-28 Jim ProcterJAL-1517 first stab at release notes... lots of documentatio...
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2014-11-28 Jim ProcterJAL-1522 output installation type to stdout
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2014-11-28 Jim ProcterJAL-1522 remove build/deployment details imported from...
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2014-11-28 Jim ProcterJAL-1517 formatting
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2014-11-28 Jim ProcterJAL-1611 revise log level to reduce verbosity
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2014-11-28 Jim ProcterJAL-1583 javadoc and fix constructor signature
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2014-11-28 Jim ProcterJAL-1342 document argument to specify preferred JABA...
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2014-11-28 Jim ProcterJAL-1604 formatting
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2014-11-28 Jim ProcterJAL-1604 revised wording and internationalised dialog
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2014-11-28 Jim ProcterJAL-1583 back out original fix and simply check MSAWSThread...
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2014-11-28 Jim ProcterJAL-1583 formatting
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2014-11-28 Jim ProcterJAL-1583 new validInput flag set according to validity...
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2014-11-28 Jim ProcterJAL-1583 refactored addInternalFrame to allow webservice...
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2014-11-28 Jim ProcterJAL-1517 formatting/tidy
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2014-11-27 Jim ProcterJAL-1517 svg==scalable :)
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2014-11-27 Jim ProcterMerge branch 'patchJAL-674_offset' into Release_2_8_2_Branch
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2014-11-27 Jim ProcterJAL-674 add sequence associated annotation rows to...
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2014-11-27 Jim ProcterJAL-1177 JAL-905 cannot recover sequences from dataset...
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2014-11-27 Jim ProcterJAL-674 avoid writing \0 for chain code
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2014-11-27 Jim ProcterMerge branch 'patchJAL-674_offset' into Release_2_8_2_Branch
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2014-11-27 Jim ProcterJAL-674 patch to fix bug with showing reference annotation...
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2014-11-27 Jim ProcterJAL-674 formatting
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2014-11-27 Jim ProcterJAL-674 unused variable
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2014-11-27 Jim ProcterJAL-674 bug in test
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2014-11-27 Jim ProcterJAL-674 test that PDB annotation created when importing...
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2014-11-27 Jim ProcterJAL-674 patch NPE bug when test run in isolation
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2014-11-27 Jim ProcterJAL-674 fix test properties path and add properties...
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2014-11-27 Jim ProcterJAL-674 JAL-966 new method to retrieve all views
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2014-11-27 Jim Procterorganise imports
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2014-11-27 Jim ProcterJAL-966 promote getName to an api method
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2014-11-26 Jim ProcterMerge branch 'JAL-674_fixannotlabels' into Release_2_8_2_Branch
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2014-11-26 Jim ProcterJAL-674 make RNAML-extracted secondary structure lines...
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2014-11-26 Jim ProcterJAL-1578 fix logic for showing score when no description...
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2014-11-26 Jim ProcterJAL-674 JAL-1578 commented code for displaying annotation...
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2014-11-26 Jim ProcterJAL-674 friendly name for PDB file included in secondary...
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2014-11-26 Jim ProcterJAL-674 employ the provided DNA/Protein matrix string...
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2014-11-26 Jim ProcterJAL-674 disable addition of PDBRESNUM annotation line
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2014-11-26 Jim ProcterJAL-674 nicer temperature factor labelling and include...
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2014-11-25 Jim ProcterMerge branch 'bug/JAL-689' into Release_2_8_2_Branch
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2014-11-25 Jim Procterfix for JAL-689 ensure fastpainting flag set only when...
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2014-11-25 Jim Procterformatting
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2014-11-25 Jim Procterpatch for JAL-1599 - annotation row constructed by...
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2014-11-25 Jim ProcterMerge branch 'patch_JAL-689' into Release_2_8_2_Branch
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2014-11-25 Jim Procterback out duplicate jfree classpath entry
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2014-11-24 Jim ProcterMerge branch 'JAL-1569_wuss_vienna_broke' into Release_2_8_2...
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2014-11-24 Jim ProcterJAL-1593 refactor rna helix colours to static singleton...
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2014-11-24 Jim ProcterJAL-1264 update annotation panel dimensions before...
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2014-11-24 Jim ProcterJAL-1595 update annotation sort on opening of the ...
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2014-11-24 Jim ProcterJAL-1595 annotation score is total number of rna helices
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2014-11-23 Jim ProcterJAL-1569 interactive editing of secondary structure...
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2014-11-23 Jim ProcterMerge branch 'JAL-1569_wuss_vienna_broke' into Release_2_8_2...
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2014-11-23 Jim Procteremploy test and secondary structure character for determinin...
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2014-11-23 Jim ProcterJAL-1569 formatting
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2014-11-23 Jim ProcterJAL-1593 allow per-sequence shading of RNA helix (stored...
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2014-11-23 Jim ProcterJAL-1569 test for open/close RNA parenthesis character
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2014-11-23 Jim ProcterJAL-1569 formatting
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2014-11-23 Jim ProcterJAL-1569 refactoring of stockholm test
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2014-11-23 Jim ProcterJAL-1569 consistent handling of sequence and alignment...
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2014-11-23 Jim ProcterJAL-1569 revise tests to count number and type of annotation...
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2014-11-23 Jim ProcterJAL-1569 formatting
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2014-11-23 Jim ProcterJAL-1569 preserve input ordering for stockholm files...
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2014-11-23 Jim ProcterJAL-1569 remove stdout on parsing RNA
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2014-11-23 Jim ProcterJAL-1152 avoid NPE on null alignment annotation vector
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2014-11-21 Jim ProcterJAL-674 add RNA sequence associated annotation to alignment...
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2014-11-21 Jim ProcterJAL-1569 formatting
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2014-11-21 Jim ProcterJAL-1140 sensible name for seuqences in RNAML files...
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2014-11-21 Jim ProcterJAL-1489 change initial value to distinguish non-rna...
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2014-11-21 Jim ProcterJAL-1592 JAL-1489 avoid invalid RNA structure and distinguis...
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2014-11-20 Jim ProcterJAL-1569 rna pair code in secondary structure character...
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