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2017-05-31	gmungoc	JAL-2547 handle contact features 'around' a gap correctly	commit \| commitdiff \| tree
2017-05-30	gmungoc	JAL-2547 tooltip/AmendFeatures on gap straddled by...	commit \| commitdiff \| tree
2017-05-30	gmungoc	JAL-2570 don't zap group colour scheme when mapping...	commit \| commitdiff \| tree
2017-05-23	gmungoc	JAL-2547 don't show features in tooltip over a gap	commit \| commitdiff \| tree
2017-05-22	gmungoc	JAL-2504 update the right feature colour when creating...	commit \| commitdiff \| tree
2017-05-22	gmungoc	JAL-2544 unit tests for sort by feature score	commit \| commitdiff \| tree
2017-05-22	gmungoc	JAL-2544 check feature overlaps selection region	commit \| commitdiff \| tree
2017-05-19	gmungoc	JAL-2526 removed redundant call to Sequence.findPosition()	commit \| commitdiff \| tree
2017-05-17	gmungoc	JAL-2504 use (and update) defaults for new feature...	commit \| commitdiff \| tree
2017-05-17	gmungoc	Merge branch 'develop' into bug/JAL-2510amendFeatures	commit \| commitdiff \| tree
2017-05-16	gmungoc	JAL-2517 restore complex colour scheme on Cancel in...	commit \| commitdiff \| tree
2017-05-16	gmungoc	JAL-2403 simplify instantiation / configuration of...	commit \| commitdiff \| tree
2017-05-15	gmungoc	JAL-2532 new feature types and colour changes from...	commit \| commitdiff \| tree
2017-05-09	gmungoc	JAL-1632 correct i18n and NPE	commit \| commitdiff \| tree
2017-05-08	gmungoc	JAL-1933 Spanish tooltips for annotation	commit \| commitdiff \| tree
2017-05-08	gmungoc	JAL-1632 i18n for warning messages	commit \| commitdiff \| tree
2017-05-08	gmungoc	Merge remote-tracking branch 'origin/bug/JAL-2515'...	commit \| commitdiff \| tree
2017-05-05	gmungoc	Merge branch 'develop' into features/JAL-2435splitScreenFont	commit \| commitdiff \| tree
2017-05-05	gmungoc	JAL-964 JAL-2510 update Feature Settings from Amend...	commit \| commitdiff \| tree
2017-05-04	gmungoc	JAL-2506 allow graduated colour as default in new Sequence...	commit \| commitdiff \| tree
2017-05-04	gmungoc	JAL-2510 ensure modified feature type is displayed	commit \| commitdiff \| tree
2017-05-04	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2017-05-04	gmungoc	JAL-2504 allow feature type to be specified for Create...	commit \| commitdiff \| tree
2017-05-03	gmungoc	JAL-2246 basic sanity test of fetching example accessions	commit \| commitdiff \| tree
2017-05-03	gmungoc	JAL-2246 test a Uniprot fetch	commit \| commitdiff \| tree
2017-05-03	gmungoc	JAL-2105 Ensembl REST now at 5.0	commit \| commitdiff \| tree
2017-05-03	gmungoc	JAL-2485 JAL-2246 test Uniprot FTS summary	commit \| commitdiff \| tree
2017-05-02	gmungoc	JAL-1933 Spanish for Occupancy	commit \| commitdiff \| tree
2017-05-02	gmungoc	JAL-2447 EXPERIMENTAL preference (option in Tools menu)	commit \| commitdiff \| tree
2017-05-02	gmungoc	JAL-2499 inlined two 1-line methods	commit \| commitdiff \| tree
2017-05-02	gmungoc	JAL-2499 JAL-2403 push 'configure for view' inside...	commit \| commitdiff \| tree
2017-05-02	gmungoc	Merge branch 'develop' into features/JAL-2393customMatrices	commit \| commitdiff \| tree
2017-05-01	gmungoc	JAL-2489 JAL-2371 reinstate calls to	commit \| commitdiff \| tree
2017-05-01	gmungoc	Merge remote-tracking branch	commit \| commitdiff \| tree
2017-04-28	gmungoc	Merge branch 'develop' into features/JAL-2393customMatrices	commit \| commitdiff \| tree
2017-04-24	gmungoc	JAL-2487 remove redundant refreshGUI to minimise threading...	commit \| commitdiff \| tree
2017-04-24	gmungoc	Merge branch 'develop' into features/JAL-2393customMatrices	commit \| commitdiff \| tree
2017-04-24	gmungoc	JAL-2424 final contig now an inclusive range	commit \| commitdiff \| tree
2017-04-21	gmungoc	JAL-2295 Spanish translations for superposition / errors	commit \| commitdiff \| tree
2017-04-21	gmungoc	JAL-2295 Spanish translations added	commit \| commitdiff \| tree
2017-04-21	gmungoc	JAL-2361 Spanish text added	commit \| commitdiff \| tree
2017-04-21	gmungoc	JAL-2423 tweak tree panel title, add Spanish text	commit \| commitdiff \| tree
2017-04-21	gmungoc	Merge branch 'develop' into features/JAL-2393customMatrices	commit \| commitdiff \| tree
2017-04-19	gmungoc	JAL-2435 mirror font changes with middle mouse drag	commit \| commitdiff \| tree
2017-04-19	gmungoc	Merge branch 'develop' into features/JAL-2435splitScreenFont	commit \| commitdiff \| tree
2017-04-17	gmungoc	Merge branch 'develop' into features/JAL-2393customMatrices	commit \| commitdiff \| tree
2017-04-12	gmungoc	JAL-2361 tweak layout of warning message	commit \| commitdiff \| tree
2017-04-12	gmungoc	JAL-1632 removed check for aligned sequences for Tree...	commit \| commitdiff \| tree
2017-04-12	gmungoc	JAL-1632 remove unused check for sequences aligned	commit \| commitdiff \| tree
2017-04-12	gmungoc	JAL-2403 ensure array held in Matrix is immutable	commit \| commitdiff \| tree
2017-04-12	gmungoc	JAL-2403 public static methods to convert distance...	commit \| commitdiff \| tree
2017-04-12	gmungoc	JAL-1632 one PCA/Tree per panel, closed when panel...	commit \| commitdiff \| tree
2017-04-11	gmungoc	JAL-2403 improved ScoreModelI hierarchy as per Kira...	commit \| commitdiff \| tree
2017-04-11	gmungoc	JAL-2428 Javadoc	commit \| commitdiff \| tree
2017-04-11	gmungoc	Merge branch 'develop' into features/JAL-2393customMatrices	commit \| commitdiff \| tree
2017-04-10	gmungoc	JAL-2403 unit tests for PCA.computeSimilarity, signature...	commit \| commitdiff \| tree
2017-04-10	gmungoc	JAL-2403 removed remaining jvCalcMode references from PCA	commit \| commitdiff \| tree
2017-04-10	gmungoc	Merge branch 'develop' into features/JAL-2393customMatrices	commit \| commitdiff \| tree
2017-04-10	gmungoc	JAL-2416 test updated for reinstatement of '*' row...	commit \| commitdiff \| tree
2017-04-10	gmungoc	JAL-2361 option to save on OK of changed named colour...	commit \| commitdiff \| tree
2017-04-09	gmungoc	JAL-2393 remove unused commented code	commit \| commitdiff \| tree
2017-04-07	gmungoc	JAL-2393 code tidying for review comments	commit \| commitdiff \| tree
2017-04-07	gmungoc	Merge branch 'develop' into features/JAL-2393customMatrices	commit \| commitdiff \| tree
2017-04-06	gmungoc	JAL-2361 make a modified saved scheme the backout checkpoint...	commit \| commitdiff \| tree
2017-04-05	gmungoc	JAL-2384 JAL-2371 update ResidueShader on change of...	commit \| commitdiff \| tree
2017-04-05	gmungoc	JAL-2361 simplify constructors, select unsaved but...	commit \| commitdiff \| tree
2017-04-05	gmungoc	JAL-2361 apply any saved changes to current colour...	commit \| commitdiff \| tree
2017-04-03	gmungoc	JAL-2314 made non-test method non-public	commit \| commitdiff \| tree
2017-04-03	gmungoc	Merge branch 'develop' into bug/JAL-2314	commit \| commitdiff \| tree
2017-04-03	gmungoc	Merge branch 'develop' into bug/JAL-2461	commit \| commitdiff \| tree
2017-04-03	gmungoc	JAL-2435 further adjustments to behaviour in split...	commit \| commitdiff \| tree
2017-04-03	gmungoc	Merge branch 'develop' into features/JAL-2435splitScreenFont	commit \| commitdiff \| tree
2017-03-31	gmungoc	JAL-2405 additional checks for circular reference in...	commit \| commitdiff \| tree
2017-03-31	gmungoc	JAL-2472 PrivilegedAccessor added	commit \| commitdiff \| tree
2017-03-31	gmungoc	Merge branch 'develop' into bug/JAL-2431splitFrameNewView	commit \| commitdiff \| tree
2017-03-31	gmungoc	JAL-2430 code tidy, unit test for Jmol hidden column...	commit \| commitdiff \| tree
2017-03-31	gmungoc	JAL-2435 tidy code	commit \| commitdiff \| tree
2017-03-31	gmungoc	JAL-1608 unused method removed	commit \| commitdiff \| tree
2017-03-31	gmungoc	JAL-2435 slightly more sensible behaviour changing...	commit \| commitdiff \| tree
2017-03-30	gmungoc	Merge branch 'develop' into features/JAL-2435splitScreenFont	commit \| commitdiff \| tree
2017-03-30	gmungoc	Merge branch 'develop' into bug/JAL-1608createGroups	commit \| commitdiff \| tree
2017-03-30	gmungoc	JAL-1608 leave Create Group, Remove Group menu items...	commit \| commitdiff \| tree
2017-03-30	gmungoc	JAL-2401 code and help tidy for review comments	commit \| commitdiff \| tree
2017-03-30	gmungoc	JAL-2401 don't apply lower case colour to upper case	commit \| commitdiff \| tree
2017-03-30	gmungoc	Merge branch 'develop' into bug/JAL-2399textColour	commit \| commitdiff \| tree
2017-03-30	gmungoc	JAL-2346 JAL-1933 test updated to include Occupancy	commit \| commitdiff \| tree
2017-03-30	gmungoc	JAL-2346 always run setup!	commit \| commitdiff \| tree
2017-03-30	gmungoc	JAL-2346 more test coverage for AnnotationColourGradient	commit \| commitdiff \| tree
2017-03-30	gmungoc	Merge branch 'develop' into bug/JAL-2346annotationChoice	commit \| commitdiff \| tree
2017-03-29	gmungoc	Merge branch 'develop' into bug/JAL-1608createGroups	commit \| commitdiff \| tree
2017-03-29	gmungoc	JAL-2416 JAL-728 reduced dependency on Blosum62 implementati...	commit \| commitdiff \| tree
2017-03-29	gmungoc	JAL-2416 revert to '*' not '-' in score matrix, handle...	commit \| commitdiff \| tree
2017-03-29	gmungoc	JAL-2416 explicit constant for unknown/unknown identity...	commit \| commitdiff \| tree
2017-03-28	gmungoc	JAL-2416 format matrix more readably	commit \| commitdiff \| tree
2017-03-28	gmungoc	JAL-2403 JAL-2416 pairwise score unexpected symbols...	commit \| commitdiff \| tree
2017-03-28	gmungoc	JAL-2416 JAL-2403 remove unused '*' row/column from...	commit \| commitdiff \| tree
2017-03-28	gmungoc	JAL-2403 further test coverage for ScoreMatrix, min...	commit \| commitdiff \| tree
2017-03-28	gmungoc	JAL-2416 more test coverage of matrix parser	commit \| commitdiff \| tree
2017-03-27	gmungoc	JAL-2416 parse score matrices in either NCBI or AAindex...	commit \| commitdiff \| tree
2017-03-27	gmungoc	JAL-2416 amended to AAindex format	commit \| commitdiff \| tree
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