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JAL-2629 add hmmalign command
2017-05-31 gmungocJAL-2547 handle contact features 'around' a gap correctly
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2017-05-30 gmungocJAL-2547 tooltip/AmendFeatures on gap straddled by...
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2017-05-30 gmungocJAL-2570 don't zap group colour scheme when mapping...
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2017-05-23 gmungocJAL-2547 don't show features in tooltip over a gap
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2017-05-22 gmungocJAL-2504 update the right feature colour when creating...
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2017-05-22 gmungocJAL-2544 unit tests for sort by feature score
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2017-05-22 gmungocJAL-2544 check feature overlaps selection region
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2017-05-19 gmungocJAL-2526 removed redundant call to Sequence.findPosition()
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2017-05-17 gmungocJAL-2504 use (and update) defaults for new feature...
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2017-05-17 gmungocMerge branch 'develop' into bug/JAL-2510amendFeatures
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2017-05-16 gmungocJAL-2517 restore complex colour scheme on Cancel in...
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2017-05-16 gmungocJAL-2403 simplify instantiation / configuration of...
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2017-05-15 gmungocJAL-2532 new feature types and colour changes from...
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2017-05-09 gmungocJAL-1632 correct i18n and NPE
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2017-05-08 gmungocJAL-1933 Spanish tooltips for annotation
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2017-05-08 gmungocJAL-1632 i18n for warning messages
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2017-05-08 gmungocMerge remote-tracking branch 'origin/bug/JAL-2515'...
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2017-05-05 gmungocMerge branch 'develop' into features/JAL-2435splitScreenFont
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2017-05-05 gmungocJAL-964 JAL-2510 update Feature Settings from Amend...
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2017-05-04 gmungocJAL-2506 allow graduated colour as default in new Sequence...
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2017-05-04 gmungocJAL-2510 ensure modified feature type is displayed
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2017-05-04 gmungocMerge branch 'develop' of https://source.jalview.org...
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2017-05-04 gmungocJAL-2504 allow feature type to be specified for Create...
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2017-05-03 gmungocJAL-2246 basic sanity test of fetching example accessions
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2017-05-03 gmungocJAL-2246 test a Uniprot fetch
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2017-05-03 gmungocJAL-2105 Ensembl REST now at 5.0
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2017-05-03 gmungocJAL-2485 JAL-2246 test Uniprot FTS summary
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2017-05-02 gmungocJAL-1933 Spanish for Occupancy
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2017-05-02 gmungocJAL-2447 EXPERIMENTAL preference (option in Tools menu)
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2017-05-02 gmungocJAL-2499 inlined two 1-line methods
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2017-05-02 gmungocJAL-2499 JAL-2403 push 'configure for view' inside...
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2017-05-02 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
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2017-05-01 gmungocJAL-2489 JAL-2371 reinstate calls to
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2017-05-01 gmungocMerge remote-tracking branch
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2017-04-28 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
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2017-04-24 gmungocJAL-2487 remove redundant refreshGUI to minimise threading...
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2017-04-24 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
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2017-04-24 gmungocJAL-2424 final contig now an inclusive range
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2017-04-21 gmungocJAL-2295 Spanish translations for superposition / errors
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2017-04-21 gmungocJAL-2295 Spanish translations added
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2017-04-21 gmungocJAL-2361 Spanish text added
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2017-04-21 gmungocJAL-2423 tweak tree panel title, add Spanish text
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2017-04-21 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
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2017-04-19 gmungocJAL-2435 mirror font changes with middle mouse drag
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2017-04-19 gmungocMerge branch 'develop' into features/JAL-2435splitScreenFont
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2017-04-17 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
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2017-04-12 gmungocJAL-2361 tweak layout of warning message
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2017-04-12 gmungocJAL-1632 removed check for aligned sequences for Tree...
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2017-04-12 gmungocJAL-1632 remove unused check for sequences aligned
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2017-04-12 gmungocJAL-2403 ensure array held in Matrix is immutable
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2017-04-12 gmungocJAL-2403 public static methods to convert distance...
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2017-04-12 gmungocJAL-1632 one PCA/Tree per panel, closed when panel...
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2017-04-11 gmungocJAL-2403 improved ScoreModelI hierarchy as per Kira...
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2017-04-11 gmungocJAL-2428 Javadoc
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2017-04-11 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
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2017-04-10 gmungocJAL-2403 unit tests for PCA.computeSimilarity, signature...
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2017-04-10 gmungocJAL-2403 removed remaining jvCalcMode references from PCA
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2017-04-10 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
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2017-04-10 gmungocJAL-2416 test updated for reinstatement of '*' row...
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2017-04-10 gmungocJAL-2361 option to save on OK of changed named colour...
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2017-04-09 gmungocJAL-2393 remove unused commented code
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2017-04-07 gmungocJAL-2393 code tidying for review comments
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2017-04-07 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
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2017-04-06 gmungocJAL-2361 make a modified saved scheme the backout checkpoint...
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2017-04-05 gmungocJAL-2384 JAL-2371 update ResidueShader on change of...
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2017-04-05 gmungocJAL-2361 simplify constructors, select unsaved but...
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2017-04-05 gmungocJAL-2361 apply any saved changes to current colour...
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2017-04-03 gmungocJAL-2314 made non-test method non-public
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2017-04-03 gmungocMerge branch 'develop' into bug/JAL-2314
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2017-04-03 gmungocMerge branch 'develop' into bug/JAL-2461
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2017-04-03 gmungocJAL-2435 further adjustments to behaviour in split...
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2017-04-03 gmungocMerge branch 'develop' into features/JAL-2435splitScreenFont
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2017-03-31 gmungocJAL-2405 additional checks for circular reference in...
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2017-03-31 gmungocJAL-2472 PrivilegedAccessor added
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2017-03-31 gmungocMerge branch 'develop' into bug/JAL-2431splitFrameNewView
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2017-03-31 gmungocJAL-2430 code tidy, unit test for Jmol hidden column...
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2017-03-31 gmungocJAL-2435 tidy code
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2017-03-31 gmungocJAL-1608 unused method removed
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2017-03-31 gmungocJAL-2435 slightly more sensible behaviour changing...
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2017-03-30 gmungocMerge branch 'develop' into features/JAL-2435splitScreenFont
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2017-03-30 gmungocMerge branch 'develop' into bug/JAL-1608createGroups
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2017-03-30 gmungocJAL-1608 leave Create Group, Remove Group menu items...
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2017-03-30 gmungocJAL-2401 code and help tidy for review comments
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2017-03-30 gmungocJAL-2401 don't apply lower case colour to upper case
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2017-03-30 gmungocMerge branch 'develop' into bug/JAL-2399textColour
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2017-03-30 gmungocJAL-2346 JAL-1933 test updated to include Occupancy
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2017-03-30 gmungocJAL-2346 always run setup!
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2017-03-30 gmungocJAL-2346 more test coverage for AnnotationColourGradient
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2017-03-30 gmungocMerge branch 'develop' into bug/JAL-2346annotationChoice
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2017-03-29 gmungocMerge branch 'develop' into bug/JAL-1608createGroups
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2017-03-29 gmungocJAL-2416 JAL-728 reduced dependency on Blosum62 implementati...
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2017-03-29 gmungocJAL-2416 revert to '*' not '-' in score matrix, handle...
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2017-03-29 gmungocJAL-2416 explicit constant for unknown/unknown identity...
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2017-03-28 gmungocJAL-2416 format matrix more readably
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2017-03-28 gmungocJAL-2403 JAL-2416 pairwise score unexpected symbols...
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2017-03-28 gmungocJAL-2416 JAL-2403 remove unused '*' row/column from...
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2017-03-28 gmungocJAL-2403 further test coverage for ScoreMatrix, min...
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2017-03-28 gmungocJAL-2416 more test coverage of matrix parser
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2017-03-27 gmungocJAL-2416 parse score matrices in either NCBI or AAindex...
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2017-03-27 gmungocJAL-2416 amended to AAindex format
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